Wall clock time and date at job start Tue Mar 31 2020 06:21:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99778 * 2 1 4 4 H 1.09000 * 109.47768 * 30.00154 * 3 2 1 5 5 C 1.53002 * 109.47022 * 269.99514 * 3 2 1 6 6 C 1.52997 * 109.47335 * 300.00368 * 5 3 2 7 7 C 1.53005 * 109.47101 * 300.00267 * 6 5 3 8 8 C 1.52993 * 109.47393 * 59.99620 * 7 6 5 9 9 H 1.09006 * 109.46857 * 60.00138 * 8 7 6 10 10 C 1.53005 * 109.47393 * 180.02562 * 8 7 6 11 11 C 1.50703 * 109.46848 * 295.00360 * 10 8 7 12 12 O 1.21292 * 119.99990 * 359.97438 * 11 10 8 13 13 N 1.34773 * 119.99572 * 179.72463 * 11 10 8 14 14 C 1.37102 * 119.99910 * 180.27628 * 13 11 10 15 15 H 1.07997 * 119.99866 * 222.43071 * 14 13 11 16 16 C 1.38950 * 120.00241 * 42.42915 * 14 13 11 17 17 N 1.31415 * 119.99679 * 19.30878 * 16 14 13 18 18 Si 1.86795 * 120.00224 * 199.30647 * 16 14 13 19 19 H 1.48499 * 109.47209 * 89.99970 * 18 16 14 20 20 H 1.48497 * 109.47304 * 210.00306 * 18 16 14 21 21 H 1.48503 * 109.46955 * 330.00103 * 18 16 14 22 22 C 1.46504 * 120.00244 * 0.26940 * 13 11 10 23 23 C 1.52994 * 117.49833 * 183.39424 * 22 13 11 24 24 C 1.53000 * 117.49425 * 114.73384 * 22 13 11 25 25 C 1.52997 * 109.47307 * 300.00253 * 8 7 6 26 26 H 1.09004 * 109.47146 * 300.00359 * 1 2 3 27 27 H 1.09003 * 109.46839 * 60.00091 * 1 2 3 28 28 H 1.09000 * 109.47475 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.46993 * 60.00665 * 5 3 2 30 30 H 1.09006 * 109.46979 * 180.02562 * 5 3 2 31 31 H 1.08999 * 109.47031 * 59.99672 * 6 5 3 32 32 H 1.08998 * 109.47498 * 180.02562 * 6 5 3 33 33 H 1.08999 * 109.46692 * 299.99613 * 7 6 5 34 34 H 1.08997 * 109.47157 * 179.97438 * 7 6 5 35 35 H 1.08994 * 109.47443 * 175.00233 * 10 8 7 36 36 H 1.09000 * 109.46830 * 55.00252 * 10 8 7 37 37 H 0.96994 * 119.99851 * 174.77136 * 17 16 14 38 38 H 1.08994 * 115.54881 * 329.06792 * 22 13 11 39 39 H 1.09003 * 117.50157 * 359.97438 * 23 22 13 40 40 H 1.09002 * 117.49881 * 145.02469 * 23 22 13 41 41 H 1.09003 * 117.49296 * 214.97763 * 24 22 13 42 42 H 1.08990 * 117.50203 * 0.02562 * 24 22 13 43 43 H 1.09004 * 109.47069 * 180.02562 * 25 8 7 44 44 H 1.09006 * 109.47068 * 299.99756 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2177 1.7713 -1.4425 6 6 3.1515 0.7973 -2.1637 7 6 4.5002 0.7550 -1.4424 8 6 4.2927 0.2892 0.0001 9 1 3.8493 -0.7066 0.0001 10 6 5.6413 0.2476 0.7216 11 6 6.5186 -0.8003 0.0865 12 8 6.1057 -1.4502 -0.8507 13 7 7.7639 -1.0117 0.5567 14 6 8.5641 -1.9611 -0.0247 15 1 9.1586 -2.6180 0.5929 16 6 8.6102 -2.0782 -1.4085 17 7 8.2128 -1.0805 -2.1659 18 14 9.2371 -3.6536 -2.1922 19 1 8.1025 -4.5890 -2.3994 20 1 9.8652 -3.3397 -3.5007 21 1 10.2421 -4.2847 -1.2995 22 6 8.2624 -0.2271 1.6889 23 6 9.7106 -0.4579 2.1252 24 6 8.5585 -0.9747 2.9906 25 6 3.3589 1.2632 0.7213 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.2570 1.8014 -1.9564 30 1 2.6615 2.7670 -1.4425 31 1 2.7082 -0.1985 -2.1637 32 1 3.2997 1.1294 -3.1913 33 1 4.9435 1.7508 -1.4424 34 1 5.1653 0.0608 -1.9559 35 1 5.4841 0.0019 1.7718 36 1 6.1247 1.2215 0.6447 37 1 8.3153 -1.1320 -3.1290 38 1 7.8681 0.7859 1.7688 39 1 10.2923 -1.1938 1.5702 40 1 10.2689 0.4032 2.4926 41 1 8.3593 -0.4532 3.9269 42 1 8.3828 -2.0502 3.0044 43 1 3.2115 0.9316 1.7491 44 1 3.8023 2.2591 0.7213 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332151648.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:29 Heat of formation + Delta-G solvation = -60.273244 kcal Electronic energy + Delta-G solvation = -23515.612821 eV Core-core repulsion = 20240.757879 eV Total energy + Delta-G solvation = -3274.854943 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.39943 -38.32556 -36.39445 -35.41505 -32.78155 -31.72650 -30.70985 -29.86845 -26.96321 -26.39217 -24.42969 -22.12596 -21.70666 -21.37386 -20.85887 -19.35500 -18.75293 -16.34691 -15.97193 -15.95123 -15.49714 -15.15232 -14.65583 -14.42833 -14.24364 -13.91152 -13.51917 -13.19031 -12.82521 -12.73540 -12.32772 -12.08139 -11.72348 -11.62346 -11.45080 -11.25747 -11.03992 -10.88806 -10.86631 -10.78863 -10.51389 -10.38606 -10.09172 -10.02388 -9.87036 -9.75506 -9.69050 -9.49585 -9.21358 -8.61697 -7.74775 -6.90755 -6.01695 -3.74466 3.36173 3.42851 3.46801 3.91906 4.26100 4.35930 4.85972 4.87216 4.94543 5.04323 5.16565 5.31468 5.34854 5.38670 5.55208 5.58274 5.64873 5.66686 5.71421 5.80418 5.82135 5.86368 5.92928 5.93963 6.13375 6.21968 6.26349 6.28220 6.33397 6.35713 6.37202 6.51729 6.68672 6.77573 6.83510 6.86435 6.98631 7.20657 7.30297 7.44126 7.70692 8.37148 9.18079 9.30272 9.79932 10.45743 11.07343 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.018560 B = 0.005382 C = 0.004606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.262936 B = 5201.438121 C = 6078.090293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.374 6.374 3 C 0.092 3.908 4 H 0.052 0.948 5 C -0.139 4.139 6 C -0.110 4.110 7 C -0.117 4.117 8 C -0.058 4.058 9 H 0.081 0.919 10 C -0.130 4.130 11 C 0.484 3.516 12 O -0.526 6.526 13 N -0.433 5.433 14 C -0.349 4.349 15 H 0.075 0.925 16 C 0.075 3.925 17 N -0.831 5.831 18 Si 0.910 3.090 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.276 1.276 22 C 0.079 3.921 23 C -0.176 4.176 24 C -0.209 4.209 25 C -0.112 4.112 26 H 0.036 0.964 27 H 0.036 0.964 28 H 0.082 0.918 29 H 0.053 0.947 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.051 0.949 33 H 0.044 0.956 34 H 0.100 0.900 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.262 0.738 38 H 0.101 0.899 39 H 0.106 0.894 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.090 0.910 43 H 0.063 0.937 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.866 7.303 5.927 13.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.292 6.292 3 C 0.034 3.966 4 H 0.070 0.930 5 C -0.177 4.177 6 C -0.147 4.147 7 C -0.154 4.154 8 C -0.077 4.077 9 H 0.099 0.901 10 C -0.170 4.170 11 C 0.271 3.729 12 O -0.403 6.403 13 N -0.154 5.154 14 C -0.475 4.475 15 H 0.092 0.908 16 C -0.135 4.135 17 N -0.465 5.465 18 Si 0.737 3.263 19 H -0.204 1.204 20 H -0.215 1.215 21 H -0.201 1.201 22 C -0.028 4.028 23 C -0.214 4.214 24 C -0.248 4.248 25 C -0.149 4.149 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.100 0.900 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.118 0.882 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.072 0.928 38 H 0.119 0.881 39 H 0.124 0.876 40 H 0.101 0.899 41 H 0.101 0.899 42 H 0.108 0.892 43 H 0.082 0.918 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -10.064 6.836 5.207 13.234 hybrid contribution 0.196 -0.268 -0.330 0.468 sum -9.868 6.568 4.878 12.818 Atomic orbital electron populations 1.22734 0.82209 1.02357 0.99297 1.88024 1.18512 1.27768 1.94932 1.22119 0.94736 0.84205 0.95509 0.92983 1.22033 0.99737 0.99713 0.96203 1.21393 0.96053 0.99371 0.97916 1.21687 0.96681 1.01315 0.95693 1.20702 0.93072 0.99480 0.94453 0.90079 1.21678 0.96158 0.99476 0.99721 1.19789 0.81538 0.85896 0.85634 1.90485 1.72453 1.49646 1.27736 1.42845 1.10794 1.33619 1.28175 1.18823 1.27113 1.12158 0.89453 0.90776 1.25154 0.94974 0.96666 0.96720 1.69834 1.41925 1.29735 1.04960 0.86263 0.78341 0.83408 0.78267 1.20426 1.21451 1.20086 1.21654 0.97389 0.94687 0.89033 1.23067 0.91858 1.03209 1.03232 1.23316 1.05384 1.01031 0.95096 1.21742 0.93806 1.00412 0.98957 0.94577 0.94511 0.89983 0.92781 0.91511 0.91575 0.92986 0.93748 0.88214 0.91232 0.91290 0.92806 0.88121 0.87585 0.89944 0.89933 0.89194 0.91832 0.91161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.82 101.05 1.09 1.43 16 2 O -0.37 -5.53 9.00 -35.23 -0.32 -5.85 16 3 C 0.09 1.22 2.92 -26.73 -0.08 1.15 16 4 H 0.05 0.58 7.79 -51.93 -0.40 0.18 16 5 C -0.14 -1.85 5.63 -26.73 -0.15 -2.00 16 6 C -0.11 -1.80 5.78 -26.73 -0.15 -1.95 16 7 C -0.12 -2.23 4.95 -26.73 -0.13 -2.37 16 8 C -0.06 -1.07 1.69 -90.62 -0.15 -1.22 16 9 H 0.08 1.72 7.50 -51.93 -0.39 1.33 16 10 C -0.13 -2.54 3.79 -27.88 -0.11 -2.64 16 11 C 0.48 12.24 6.69 -10.99 -0.07 12.17 16 12 O -0.53 -15.23 11.59 5.55 0.06 -15.17 16 13 N -0.43 -10.94 2.85 -107.73 -0.31 -11.25 16 14 C -0.35 -9.63 8.00 -14.93 -0.12 -9.75 16 15 H 0.07 2.00 7.18 -52.49 -0.38 1.63 16 16 C 0.08 2.13 4.35 -17.47 -0.08 2.06 16 17 N -0.83 -24.59 11.65 55.50 0.65 -23.94 16 18 Si 0.91 22.32 29.60 -169.99 -5.03 17.29 16 19 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 C 0.08 1.60 5.88 -67.93 -0.40 1.21 16 23 C -0.18 -3.24 9.80 -26.70 -0.26 -3.50 16 24 C -0.21 -3.66 10.36 -26.69 -0.28 -3.93 16 25 C -0.11 -1.60 4.94 -26.73 -0.13 -1.73 16 26 H 0.04 0.33 8.09 -51.93 -0.42 -0.09 16 27 H 0.04 0.36 7.87 -51.93 -0.41 -0.05 16 28 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.05 0.65 7.87 -51.93 -0.41 0.24 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.07 1.18 7.68 -51.93 -0.40 0.78 16 32 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.10 2.41 5.95 -51.93 -0.31 2.10 16 35 H 0.07 1.23 8.11 -51.93 -0.42 0.81 16 36 H 0.07 1.27 7.56 -51.93 -0.39 0.88 16 37 H 0.26 7.47 8.32 -40.82 -0.34 7.13 16 38 H 0.10 1.84 6.95 -51.93 -0.36 1.48 16 39 H 0.11 2.17 6.68 -51.93 -0.35 1.82 16 40 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 41 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.09 1.70 8.14 -51.93 -0.42 1.27 16 43 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 342.40 15.07 5.16 5.16 Total: -1.00 -32.14 342.40 -8.38 -40.52 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -7.58 Total: 4.33 kcal Atomic # 6 Polarization: -10.07 SS G_CDS: -1.02 Total: -11.09 kcal Atomic # 7 Polarization: -35.53 SS G_CDS: 0.34 Total: -35.19 kcal Atomic # 8 Polarization: -20.77 SS G_CDS: -0.25 Total: -21.02 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.03 Total: 17.29 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.14 -8.38 -40.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332151648.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.753 kcal (2) G-P(sol) polarization free energy of solvation -32.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds