Wall clock time and date at job start Tue Mar 31 2020 06:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99778 * 2 1 4 4 H 1.09000 * 109.47768 * 30.00154 * 3 2 1 5 5 C 1.53002 * 109.47022 * 269.99514 * 3 2 1 6 6 C 1.52997 * 109.47335 * 300.00368 * 5 3 2 7 7 C 1.53005 * 109.47101 * 300.00267 * 6 5 3 8 8 C 1.52993 * 109.47393 * 59.99620 * 7 6 5 9 9 H 1.09006 * 109.46857 * 60.00138 * 8 7 6 10 10 C 1.53005 * 109.47393 * 180.02562 * 8 7 6 11 11 C 1.50703 * 109.46848 * 295.00360 * 10 8 7 12 12 O 1.21292 * 119.99990 * 359.97438 * 11 10 8 13 13 N 1.34773 * 119.99572 * 179.72463 * 11 10 8 14 14 C 1.37102 * 119.99910 * 180.27628 * 13 11 10 15 15 H 1.07997 * 119.99866 * 222.43071 * 14 13 11 16 16 C 1.38950 * 120.00241 * 42.42915 * 14 13 11 17 17 N 1.31415 * 119.99679 * 19.30878 * 16 14 13 18 18 Si 1.86795 * 120.00224 * 199.30647 * 16 14 13 19 19 H 1.48499 * 109.47209 * 89.99970 * 18 16 14 20 20 H 1.48497 * 109.47304 * 210.00306 * 18 16 14 21 21 H 1.48503 * 109.46955 * 330.00103 * 18 16 14 22 22 C 1.46504 * 120.00244 * 0.26940 * 13 11 10 23 23 C 1.52994 * 117.49833 * 183.39424 * 22 13 11 24 24 C 1.53000 * 117.49425 * 114.73384 * 22 13 11 25 25 C 1.52997 * 109.47307 * 300.00253 * 8 7 6 26 26 H 1.09004 * 109.47146 * 300.00359 * 1 2 3 27 27 H 1.09003 * 109.46839 * 60.00091 * 1 2 3 28 28 H 1.09000 * 109.47475 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.46993 * 60.00665 * 5 3 2 30 30 H 1.09006 * 109.46979 * 180.02562 * 5 3 2 31 31 H 1.08999 * 109.47031 * 59.99672 * 6 5 3 32 32 H 1.08998 * 109.47498 * 180.02562 * 6 5 3 33 33 H 1.08999 * 109.46692 * 299.99613 * 7 6 5 34 34 H 1.08997 * 109.47157 * 179.97438 * 7 6 5 35 35 H 1.08994 * 109.47443 * 175.00233 * 10 8 7 36 36 H 1.09000 * 109.46830 * 55.00252 * 10 8 7 37 37 H 0.96994 * 119.99851 * 174.77136 * 17 16 14 38 38 H 1.08994 * 115.54881 * 329.06792 * 22 13 11 39 39 H 1.09003 * 117.50157 * 359.97438 * 23 22 13 40 40 H 1.09002 * 117.49881 * 145.02469 * 23 22 13 41 41 H 1.09003 * 117.49296 * 214.97763 * 24 22 13 42 42 H 1.08990 * 117.50203 * 0.02562 * 24 22 13 43 43 H 1.09004 * 109.47069 * 180.02562 * 25 8 7 44 44 H 1.09006 * 109.47068 * 299.99756 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2177 1.7713 -1.4425 6 6 3.1515 0.7973 -2.1637 7 6 4.5002 0.7550 -1.4424 8 6 4.2927 0.2892 0.0001 9 1 3.8493 -0.7066 0.0001 10 6 5.6413 0.2476 0.7216 11 6 6.5186 -0.8003 0.0865 12 8 6.1057 -1.4502 -0.8507 13 7 7.7639 -1.0117 0.5567 14 6 8.5641 -1.9611 -0.0247 15 1 9.1586 -2.6180 0.5929 16 6 8.6102 -2.0782 -1.4085 17 7 8.2128 -1.0805 -2.1659 18 14 9.2371 -3.6536 -2.1922 19 1 8.1025 -4.5890 -2.3994 20 1 9.8652 -3.3397 -3.5007 21 1 10.2421 -4.2847 -1.2995 22 6 8.2624 -0.2271 1.6889 23 6 9.7106 -0.4579 2.1252 24 6 8.5585 -0.9747 2.9906 25 6 3.3589 1.2632 0.7213 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.2570 1.8014 -1.9564 30 1 2.6615 2.7670 -1.4425 31 1 2.7082 -0.1985 -2.1637 32 1 3.2997 1.1294 -3.1913 33 1 4.9435 1.7508 -1.4424 34 1 5.1653 0.0608 -1.9559 35 1 5.4841 0.0019 1.7718 36 1 6.1247 1.2215 0.6447 37 1 8.3153 -1.1320 -3.1290 38 1 7.8681 0.7859 1.7688 39 1 10.2923 -1.1938 1.5702 40 1 10.2689 0.4032 2.4926 41 1 8.3593 -0.4532 3.9269 42 1 8.3828 -2.0502 3.0044 43 1 3.2115 0.9316 1.7491 44 1 3.8023 2.2591 0.7213 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332151648.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:28 Heat of formation + Delta-G solvation = -79.635383 kcal Electronic energy + Delta-G solvation = -23516.452427 eV Core-core repulsion = 20240.757879 eV Total energy + Delta-G solvation = -3275.694548 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.81121 -39.86169 -37.89932 -36.84480 -34.72946 -33.25591 -32.57477 -31.06540 -28.57400 -27.29020 -26.29437 -23.37993 -23.20613 -22.85853 -22.41464 -20.82698 -20.34288 -18.16769 -17.75945 -17.07296 -16.62242 -16.59176 -16.24034 -15.96239 -15.74016 -15.65287 -15.00550 -14.50382 -14.34081 -14.25361 -13.64762 -13.39948 -13.34094 -13.00712 -12.93195 -12.78319 -12.71049 -12.57101 -12.34737 -12.14508 -12.09828 -12.01844 -11.77852 -11.58849 -11.35174 -11.20100 -11.09555 -10.90340 -10.64768 -10.28320 -9.69343 -8.89158 -8.14828 -5.89990 1.34235 1.43301 1.47023 2.30706 2.51287 3.01139 3.14074 3.19667 3.42915 3.84878 3.86410 3.96508 4.16415 4.17355 4.29680 4.32439 4.39904 4.45460 4.51013 4.54817 4.62643 4.63750 4.74742 4.78199 4.83039 4.87156 4.91408 4.95872 4.98624 5.01564 5.07836 5.12380 5.30210 5.37627 5.41065 5.46739 5.48787 5.53818 5.70364 5.79827 6.25107 6.46409 7.10569 7.31825 7.81194 8.50283 8.93338 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.018560 B = 0.005382 C = 0.004606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.262936 B = 5201.438121 C = 6078.090293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.408 6.408 3 C 0.089 3.911 4 H 0.087 0.913 5 C -0.132 4.132 6 C -0.106 4.106 7 C -0.111 4.111 8 C -0.051 4.051 9 H 0.042 0.958 10 C -0.116 4.116 11 C 0.465 3.535 12 O -0.576 6.576 13 N -0.451 5.451 14 C -0.356 4.356 15 H 0.072 0.928 16 C 0.025 3.975 17 N -0.864 5.864 18 Si 0.963 3.037 19 H -0.295 1.295 20 H -0.281 1.281 21 H -0.256 1.256 22 C 0.047 3.953 23 C -0.173 4.173 24 C -0.182 4.182 25 C -0.105 4.105 26 H 0.056 0.944 27 H 0.047 0.953 28 H 0.083 0.917 29 H 0.071 0.929 30 H 0.085 0.915 31 H 0.041 0.959 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.040 0.960 35 H 0.093 0.907 36 H 0.086 0.914 37 H 0.256 0.744 38 H 0.127 0.873 39 H 0.078 0.922 40 H 0.117 0.883 41 H 0.125 0.875 42 H 0.070 0.930 43 H 0.075 0.925 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.731 9.426 8.301 16.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.328 6.328 3 C 0.032 3.968 4 H 0.105 0.895 5 C -0.170 4.170 6 C -0.143 4.143 7 C -0.149 4.149 8 C -0.070 4.070 9 H 0.060 0.940 10 C -0.157 4.157 11 C 0.255 3.745 12 O -0.457 6.457 13 N -0.172 5.172 14 C -0.484 4.484 15 H 0.090 0.910 16 C -0.182 4.182 17 N -0.500 5.500 18 Si 0.789 3.211 19 H -0.222 1.222 20 H -0.207 1.207 21 H -0.180 1.180 22 C -0.058 4.058 23 C -0.210 4.210 24 C -0.220 4.220 25 C -0.142 4.142 26 H 0.074 0.926 27 H 0.065 0.935 28 H 0.102 0.898 29 H 0.090 0.910 30 H 0.104 0.896 31 H 0.059 0.941 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.059 0.941 35 H 0.111 0.889 36 H 0.104 0.896 37 H 0.065 0.935 38 H 0.144 0.856 39 H 0.096 0.904 40 H 0.136 0.864 41 H 0.143 0.857 42 H 0.089 0.911 43 H 0.093 0.907 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -10.900 8.966 7.626 16.042 hybrid contribution 0.474 -0.977 -1.008 1.482 sum -10.426 7.989 6.618 14.708 Atomic orbital electron populations 1.22913 0.80377 1.03094 1.00736 1.88002 1.20715 1.28968 1.95115 1.22230 0.94722 0.84443 0.95435 0.89508 1.22007 0.99585 0.99245 0.96136 1.21311 0.95302 0.99351 0.98374 1.21526 0.97105 0.99924 0.96296 1.20581 0.93227 0.98841 0.94340 0.93957 1.21620 0.95551 0.98045 1.00441 1.20847 0.82039 0.86503 0.85143 1.90458 1.73621 1.51669 1.29961 1.43101 1.10850 1.33943 1.29323 1.19033 1.26691 1.13018 0.89645 0.90995 1.25917 0.95688 0.99084 0.97485 1.69943 1.43994 1.31452 1.04584 0.85415 0.77638 0.79928 0.78083 1.22203 1.20680 1.17968 1.21994 0.99254 0.95817 0.88721 1.23110 0.91169 1.03808 1.02941 1.23322 1.03291 1.00054 0.95368 1.21722 0.93462 1.00086 0.98973 0.92574 0.93473 0.89820 0.91032 0.89627 0.94058 0.92819 0.92844 0.94145 0.88854 0.89596 0.93488 0.85595 0.90389 0.86447 0.85657 0.91113 0.90655 0.88796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.48 10.82 113.37 1.23 1.71 16 2 O -0.41 -11.52 9.00 -148.98 -1.34 -12.86 16 3 C 0.09 2.10 2.92 30.60 0.09 2.19 16 4 H 0.09 1.50 7.79 -2.39 -0.02 1.48 16 5 C -0.13 -3.17 5.63 30.59 0.17 -3.00 16 6 C -0.11 -3.51 5.78 30.60 0.18 -3.34 16 7 C -0.11 -4.39 4.95 30.59 0.15 -4.24 16 8 C -0.05 -1.87 1.69 -10.80 -0.02 -1.89 16 9 H 0.04 1.87 7.50 -2.38 -0.02 1.85 16 10 C -0.12 -4.47 3.79 29.85 0.11 -4.36 16 11 C 0.46 24.26 6.69 87.66 0.59 24.84 16 12 O -0.58 -35.45 11.59 -3.07 -0.04 -35.48 16 13 N -0.45 -23.15 2.85 -613.14 -1.75 -24.90 16 14 C -0.36 -20.25 8.00 84.04 0.67 -19.57 16 15 H 0.07 4.00 7.18 -2.91 -0.02 3.98 16 16 C 0.02 1.45 4.35 84.93 0.37 1.82 16 17 N -0.86 -53.65 11.65 21.66 0.25 -53.40 16 18 Si 0.96 47.49 29.60 68.60 2.03 49.52 16 19 H -0.29 -15.21 7.11 99.48 0.71 -14.50 16 20 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 21 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 22 C 0.05 1.85 5.88 44.99 0.26 2.11 16 23 C -0.17 -6.01 9.80 30.62 0.30 -5.71 16 24 C -0.18 -5.85 10.36 30.62 0.32 -5.54 16 25 C -0.11 -2.71 4.94 30.60 0.15 -2.55 16 26 H 0.06 0.85 8.09 -2.38 -0.02 0.83 16 27 H 0.05 0.80 7.87 -2.39 -0.02 0.78 16 28 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.07 1.49 7.87 -2.39 -0.02 1.47 16 30 H 0.09 1.76 8.14 -2.38 -0.02 1.74 16 31 H 0.04 1.55 7.68 -2.39 -0.02 1.53 16 32 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.04 2.09 5.95 -2.39 -0.01 2.08 16 35 H 0.09 3.11 8.11 -2.39 -0.02 3.09 16 36 H 0.09 3.00 7.56 -2.39 -0.02 2.99 16 37 H 0.26 15.42 8.32 -92.71 -0.77 14.65 16 38 H 0.13 4.22 6.95 -2.39 -0.02 4.21 16 39 H 0.08 3.17 6.68 -2.39 -0.02 3.15 16 40 H 0.12 3.24 8.14 -2.39 -0.02 3.22 16 41 H 0.13 3.01 8.14 -2.39 -0.02 2.99 16 42 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 43 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 44 H 0.09 2.00 8.14 -2.38 -0.02 1.98 16 Total: -1.00 -75.96 342.40 4.69 -71.27 By element: Atomic # 1 Polarization: 22.42 SS G_CDS: 0.96 Total: 23.37 kcal Atomic # 6 Polarization: -22.10 SS G_CDS: 4.57 Total: -17.53 kcal Atomic # 7 Polarization: -76.80 SS G_CDS: -1.49 Total: -78.29 kcal Atomic # 8 Polarization: -46.96 SS G_CDS: -1.38 Total: -48.34 kcal Atomic # 14 Polarization: 47.49 SS G_CDS: 2.03 Total: 49.52 kcal Total: -75.96 4.69 -71.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332151648.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.369 kcal (2) G-P(sol) polarization free energy of solvation -75.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds