Wall clock time and date at job start Tue Mar 31 2020 06:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42892 * 114.00268 * 2 1 4 4 H 1.09001 * 109.47661 * 29.99657 * 3 2 1 5 5 C 1.53005 * 109.47207 * 269.99845 * 3 2 1 6 6 C 1.53001 * 109.47051 * 180.02562 * 5 3 2 7 7 C 1.52995 * 109.47450 * 60.00088 * 6 5 3 8 8 C 1.52996 * 109.46881 * 299.99980 * 7 6 5 9 9 H 1.08993 * 109.47380 * 299.99826 * 8 7 6 10 10 C 1.53005 * 109.47110 * 179.97438 * 8 7 6 11 11 C 1.50699 * 109.46930 * 64.99854 * 10 8 7 12 12 O 1.21295 * 120.00073 * 0.02562 * 11 10 8 13 13 N 1.34777 * 120.00002 * 180.02562 * 11 10 8 14 14 C 1.37107 * 119.99869 * 180.02562 * 13 11 10 15 15 H 1.07999 * 119.99705 * 224.28999 * 14 13 11 16 16 C 1.38948 * 120.00092 * 44.28755 * 14 13 11 17 17 N 1.31410 * 119.99956 * 18.20948 * 16 14 13 18 18 Si 1.86798 * 119.99901 * 198.20887 * 16 14 13 19 19 H 1.48507 * 109.47206 * 90.00037 * 18 16 14 20 20 H 1.48496 * 109.47261 * 210.00039 * 18 16 14 21 21 H 1.48497 * 109.47155 * 329.99957 * 18 16 14 22 22 C 1.46495 * 120.00335 * 359.97438 * 13 11 10 23 23 C 1.52998 * 117.50297 * 183.22248 * 22 13 11 24 24 C 1.53000 * 60.00205 * 252.51340 * 23 22 13 25 25 C 1.52995 * 109.47316 * 149.99919 * 3 2 1 26 26 H 1.08998 * 109.46708 * 59.99870 * 1 2 3 27 27 H 1.08997 * 109.47599 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47079 * 299.99989 * 1 2 3 29 29 H 1.09005 * 109.46514 * 60.00107 * 5 3 2 30 30 H 1.08993 * 109.47351 * 299.99999 * 5 3 2 31 31 H 1.09000 * 109.47204 * 299.99509 * 6 5 3 32 32 H 1.09003 * 109.46554 * 180.02562 * 6 5 3 33 33 H 1.09004 * 109.46679 * 59.99647 * 7 6 5 34 34 H 1.08994 * 109.47093 * 179.97438 * 7 6 5 35 35 H 1.09000 * 109.47464 * 184.99871 * 10 8 7 36 36 H 1.08996 * 109.46958 * 305.00152 * 10 8 7 37 37 H 0.96998 * 119.99985 * 174.93806 * 17 16 14 38 38 H 1.08999 * 115.55017 * 328.93826 * 22 13 11 39 39 H 1.09001 * 117.49869 * 0.02562 * 23 22 13 40 40 H 1.08998 * 117.49910 * 145.02304 * 23 22 13 41 41 H 1.08998 * 117.49829 * 252.50930 * 24 23 22 42 42 H 1.08997 * 117.49668 * 107.48972 * 24 23 22 43 43 H 1.09002 * 109.47099 * 60.00086 * 25 3 2 44 44 H 1.09003 * 109.47706 * 299.99973 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9994 0.5138 5 6 2.2178 1.7713 -1.4425 6 6 2.8407 3.1687 -1.4425 7 6 4.1894 3.1259 -0.7214 8 6 3.9819 2.6600 0.7210 9 1 3.3171 3.3541 1.2349 10 6 5.3308 2.6166 1.4420 11 6 5.8877 4.0127 1.5501 12 8 5.2667 4.9503 1.0957 13 7 7.0759 4.2195 2.1517 14 6 7.5823 5.4898 2.2505 15 1 8.6241 5.6742 2.0335 16 6 6.7552 6.5399 2.6299 17 7 5.6130 6.2926 3.2308 18 14 7.2670 8.3031 2.2857 19 1 6.7608 8.7140 0.9514 20 1 6.6984 9.1959 3.3272 21 1 8.7486 8.4012 2.3048 22 6 7.8257 3.0873 2.7011 23 6 9.1308 3.3950 3.4380 24 6 9.1691 2.7481 2.0520 25 6 3.3589 1.2631 0.7212 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.2569 1.8014 -1.9563 30 1 2.8830 1.0774 -1.9564 31 1 2.1758 3.8629 -0.9286 32 1 2.9881 3.5007 -2.4702 33 1 4.8543 2.4317 -1.2354 34 1 4.6334 4.1213 -0.7219 35 1 5.1959 2.2009 2.4405 36 1 6.0238 1.9916 0.8788 37 1 5.0703 7.0254 3.5613 38 1 7.2220 2.2585 3.0708 39 1 9.4312 4.4400 3.5145 40 1 9.3857 2.7688 4.2929 41 1 9.4493 1.6962 1.9952 42 1 9.4950 3.3674 1.2164 43 1 4.0242 0.5692 0.2074 44 1 3.2112 0.9312 1.7490 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332151658.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:32 Heat of formation + Delta-G solvation = -64.950003 kcal Electronic energy + Delta-G solvation = -23228.103743 eV Core-core repulsion = 19953.046001 eV Total energy + Delta-G solvation = -3275.057742 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.39350 -38.36971 -36.65918 -35.64810 -32.85816 -31.84718 -30.76885 -29.84891 -27.02328 -26.42062 -24.48391 -22.13699 -21.74198 -21.42711 -20.92190 -19.62115 -18.85633 -16.35053 -16.32690 -15.99265 -15.47065 -15.08279 -14.72677 -14.59841 -14.18023 -13.98622 -13.70630 -13.31559 -13.19968 -12.65825 -12.52591 -12.19172 -11.74787 -11.59582 -11.57377 -11.33642 -10.97988 -10.89854 -10.82668 -10.77954 -10.63778 -10.46876 -10.17564 -10.10119 -10.03431 -9.92273 -9.85504 -9.68598 -9.31088 -8.64822 -7.87289 -6.94676 -6.06874 -3.81958 3.32407 3.39088 3.42173 3.75661 4.19841 4.31733 4.81633 4.84275 4.90254 4.99285 5.20535 5.26884 5.28518 5.32072 5.45905 5.48006 5.52593 5.59926 5.63851 5.71880 5.76213 5.80988 5.82504 5.91303 6.09260 6.10601 6.19452 6.24286 6.25456 6.26084 6.32583 6.42671 6.52770 6.59334 6.65376 6.81389 6.96224 6.96616 7.06411 7.26434 7.66076 8.32777 9.13052 9.23269 9.73489 10.38166 11.02275 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.019960 B = 0.004817 C = 0.004230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.500414 B = 5811.627499 C = 6618.028765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.389 6.389 3 C 0.090 3.910 4 H 0.059 0.941 5 C -0.137 4.137 6 C -0.114 4.114 7 C -0.119 4.119 8 C -0.061 4.061 9 H 0.077 0.923 10 C -0.128 4.128 11 C 0.486 3.514 12 O -0.530 6.530 13 N -0.432 5.432 14 C -0.348 4.348 15 H 0.075 0.925 16 C 0.075 3.925 17 N -0.835 5.835 18 Si 0.910 3.090 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.275 1.275 22 C 0.077 3.923 23 C -0.175 4.175 24 C -0.208 4.208 25 C -0.109 4.109 26 H 0.038 0.962 27 H 0.081 0.919 28 H 0.040 0.960 29 H 0.055 0.945 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.050 0.950 34 H 0.093 0.907 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.263 0.737 38 H 0.102 0.898 39 H 0.106 0.894 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.089 0.911 43 H 0.067 0.933 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.795 -10.733 -4.490 12.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.308 6.308 3 C 0.033 3.967 4 H 0.077 0.923 5 C -0.175 4.175 6 C -0.152 4.152 7 C -0.156 4.156 8 C -0.080 4.080 9 H 0.095 0.905 10 C -0.169 4.169 11 C 0.274 3.726 12 O -0.407 6.407 13 N -0.153 5.153 14 C -0.475 4.475 15 H 0.093 0.907 16 C -0.135 4.135 17 N -0.468 5.468 18 Si 0.738 3.262 19 H -0.204 1.204 20 H -0.214 1.214 21 H -0.200 1.200 22 C -0.029 4.029 23 C -0.213 4.213 24 C -0.247 4.247 25 C -0.147 4.147 26 H 0.057 0.943 27 H 0.100 0.900 28 H 0.058 0.942 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.111 0.889 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.073 0.927 38 H 0.119 0.881 39 H 0.124 0.876 40 H 0.101 0.899 41 H 0.101 0.899 42 H 0.108 0.892 43 H 0.086 0.914 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.230 -10.305 -4.696 12.474 hybrid contribution 0.020 0.954 0.066 0.956 sum -5.211 -9.351 -4.630 11.663 Atomic orbital electron populations 1.22735 0.81738 1.02222 0.99818 1.87889 1.19125 1.28667 1.95113 1.22192 0.95201 0.83643 0.95698 0.92262 1.22029 1.00690 0.97943 0.96816 1.21471 0.97786 0.95482 1.00438 1.21722 0.96056 1.03698 0.94161 1.20746 0.96158 0.94594 0.96546 0.90470 1.21634 0.96777 0.97760 1.00696 1.19787 0.82908 0.89195 0.80718 1.90478 1.57780 1.43979 1.48509 1.42817 1.18307 1.04256 1.49915 1.18831 0.96193 0.82437 1.50056 0.90739 1.25204 0.95182 0.99375 0.93745 1.69826 1.12226 1.32395 1.32374 0.86249 0.78282 0.83380 0.78304 1.20378 1.21390 1.19987 1.21682 0.87294 0.93241 1.00702 1.23051 1.01972 1.02323 0.93939 1.23303 1.04372 0.99966 0.97106 1.21669 0.94644 0.98204 1.00187 0.94334 0.90042 0.94183 0.92653 0.91419 0.92048 0.92182 0.93086 0.88881 0.90954 0.90902 0.92733 0.88080 0.87573 0.89911 0.89885 0.89203 0.91428 0.91674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.82 101.05 1.09 1.41 16 2 O -0.39 -5.27 10.35 -35.23 -0.36 -5.63 16 3 C 0.09 1.23 2.61 -26.73 -0.07 1.16 16 4 H 0.06 0.81 7.79 -51.93 -0.40 0.40 16 5 C -0.14 -1.78 5.54 -26.73 -0.15 -1.93 16 6 C -0.11 -1.65 5.92 -26.73 -0.16 -1.81 16 7 C -0.12 -2.03 4.94 -26.74 -0.13 -2.17 16 8 C -0.06 -1.07 1.84 -90.64 -0.17 -1.23 16 9 H 0.08 1.53 7.96 -51.93 -0.41 1.11 16 10 C -0.13 -2.42 3.79 -27.88 -0.11 -2.53 16 11 C 0.49 11.97 6.68 -10.99 -0.07 11.90 16 12 O -0.53 -14.88 11.73 5.54 0.07 -14.81 16 13 N -0.43 -10.72 2.83 -107.73 -0.31 -11.02 16 14 C -0.35 -9.48 7.92 -14.93 -0.12 -9.60 16 15 H 0.07 1.98 7.26 -52.49 -0.38 1.60 16 16 C 0.08 2.11 4.39 -17.47 -0.08 2.03 16 17 N -0.83 -24.61 11.74 55.50 0.65 -23.96 16 18 Si 0.91 21.96 29.59 -169.99 -5.03 16.93 16 19 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 22 C 0.08 1.55 5.87 -67.93 -0.40 1.15 16 23 C -0.18 -3.19 9.80 -26.73 -0.26 -3.45 16 24 C -0.21 -3.58 10.36 -26.73 -0.28 -3.86 16 25 C -0.11 -1.60 4.85 -26.76 -0.13 -1.73 16 26 H 0.04 0.35 7.87 -51.93 -0.41 -0.05 16 27 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.04 0.38 8.09 -51.93 -0.42 -0.04 16 29 H 0.05 0.65 7.87 -51.93 -0.41 0.24 16 30 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.09 1.93 5.95 -51.93 -0.31 1.63 16 35 H 0.07 1.30 7.57 -51.93 -0.39 0.91 16 36 H 0.07 1.25 8.11 -51.93 -0.42 0.83 16 37 H 0.26 7.45 8.32 -40.82 -0.34 7.11 16 38 H 0.10 1.82 6.96 -51.93 -0.36 1.46 16 39 H 0.11 2.15 6.72 -51.93 -0.35 1.80 16 40 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 41 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.09 1.66 8.14 -51.93 -0.42 1.23 16 43 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 344.77 15.07 5.20 5.20 Total: -1.00 -31.48 344.77 -8.44 -39.93 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -7.63 Total: 4.02 kcal Atomic # 6 Polarization: -9.62 SS G_CDS: -1.02 Total: -10.65 kcal Atomic # 7 Polarization: -35.33 SS G_CDS: 0.35 Total: -34.98 kcal Atomic # 8 Polarization: -20.15 SS G_CDS: -0.30 Total: -20.44 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.03 Total: 16.93 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.48 -8.44 -39.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332151658.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.022 kcal (2) G-P(sol) polarization free energy of solvation -31.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds