Wall clock time and date at job start Tue Mar 31 2020 06:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42893 * 113.99798 * 2 1 4 4 H 1.09001 * 109.47376 * 330.00154 * 3 2 1 5 5 C 1.53005 * 109.47454 * 89.99935 * 3 2 1 6 6 C 1.52996 * 109.47456 * 179.97438 * 5 3 2 7 7 C 1.52997 * 109.47128 * 300.00271 * 6 5 3 8 8 C 1.52996 * 109.47313 * 59.99958 * 7 6 5 9 9 H 1.08998 * 109.47409 * 60.00031 * 8 7 6 10 10 C 1.52997 * 109.47313 * 179.97438 * 8 7 6 11 11 C 1.50708 * 109.47303 * 294.99900 * 10 8 7 12 12 O 1.21291 * 119.99469 * 0.02562 * 11 10 8 13 13 N 1.34774 * 120.00122 * 179.97438 * 11 10 8 14 14 C 1.37095 * 119.99802 * 179.97438 * 13 11 10 15 15 H 1.07996 * 120.00152 * 224.29286 * 14 13 11 16 16 C 1.38947 * 120.00012 * 44.30608 * 14 13 11 17 17 N 1.31415 * 120.00149 * 18.20294 * 16 14 13 18 18 Si 1.86803 * 119.99970 * 198.21939 * 16 14 13 19 19 H 1.48498 * 109.47583 * 59.99241 * 18 16 14 20 20 H 1.48501 * 109.46950 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.46514 * 299.98890 * 18 16 14 22 22 C 1.46500 * 119.99859 * 0.02562 * 13 11 10 23 23 C 1.53006 * 117.49446 * 183.22383 * 22 13 11 24 24 C 1.53005 * 59.99984 * 252.50507 * 23 22 13 25 25 C 1.53000 * 109.47327 * 299.99862 * 8 7 6 26 26 H 1.09005 * 109.47228 * 59.99880 * 1 2 3 27 27 H 1.08997 * 109.47221 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47386 * 299.99978 * 1 2 3 29 29 H 1.08993 * 109.46861 * 300.00068 * 5 3 2 30 30 H 1.09001 * 109.46650 * 59.99774 * 5 3 2 31 31 H 1.09008 * 109.46874 * 59.99741 * 6 5 3 32 32 H 1.08997 * 109.47336 * 180.02562 * 6 5 3 33 33 H 1.09002 * 109.46963 * 179.97438 * 7 6 5 34 34 H 1.09001 * 109.47179 * 300.00067 * 7 6 5 35 35 H 1.09000 * 109.47506 * 54.99652 * 10 8 7 36 36 H 1.09001 * 109.47708 * 174.99852 * 10 8 7 37 37 H 0.96996 * 120.00328 * 174.92653 * 17 16 14 38 38 H 1.08997 * 115.55189 * 328.92225 * 22 13 11 39 39 H 1.08991 * 117.50037 * 359.97438 * 23 22 13 40 40 H 1.09002 * 117.49737 * 145.02460 * 23 22 13 41 41 H 1.08998 * 117.49994 * 252.51905 * 24 23 22 42 42 H 1.09002 * 117.49841 * 107.48797 * 24 23 22 43 43 H 1.08998 * 109.47014 * 300.00412 * 25 8 7 44 44 H 1.08997 * 109.47606 * 180.02562 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3449 1.9993 -0.5138 5 6 2.2176 1.7714 1.4425 6 6 2.8405 3.1689 1.4425 7 6 4.1892 3.1261 0.7214 8 6 3.9818 2.6602 -0.7210 9 1 3.3169 3.3543 -1.2350 10 6 5.3304 2.6181 -1.4423 11 6 5.8861 4.0148 -1.5505 12 8 5.2648 4.9516 -1.0950 13 7 7.0739 4.2227 -2.1524 14 6 7.5792 5.4933 -2.2513 15 1 8.0132 5.8310 -3.1807 16 6 7.5330 6.3465 -1.1556 17 7 7.3486 5.8579 0.0503 18 14 7.7326 8.1881 -1.3968 19 1 6.6563 8.6903 -2.2881 20 1 7.6448 8.8719 -0.0815 21 1 9.0551 8.4661 -2.0123 22 6 7.8246 3.0910 -2.7020 23 6 9.2002 3.3821 -3.3054 24 6 8.0205 3.0429 -4.2187 25 6 3.3590 1.2627 -0.7211 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.2569 1.8015 1.9563 30 1 2.8829 1.0775 1.9563 31 1 2.1755 3.8630 0.9285 32 1 2.9887 3.5006 2.4701 33 1 4.6327 4.1218 0.7210 34 1 4.8541 2.4320 1.2353 35 1 6.0242 1.9937 -0.8794 36 1 5.1956 2.2024 -2.4409 37 1 7.3897 6.4436 0.8225 38 1 7.6937 2.1426 -2.1811 39 1 9.5464 4.4155 -3.2938 40 1 9.9745 2.6250 -3.1815 41 1 8.0186 2.0627 -4.6955 42 1 7.5907 3.8532 -4.8077 43 1 4.0239 0.5686 -0.2071 44 1 3.2116 0.9306 -1.7487 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332151664.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:35 Heat of formation + Delta-G solvation = -64.672426 kcal Electronic energy + Delta-G solvation = -23264.935051 eV Core-core repulsion = 19989.889346 eV Total energy + Delta-G solvation = -3275.045706 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.37321 -38.36764 -36.64412 -35.63726 -32.85149 -31.82818 -30.76507 -29.81252 -26.99133 -26.41427 -24.48147 -22.08837 -21.73193 -21.41814 -20.91261 -19.61427 -18.82317 -16.34819 -16.32829 -16.00381 -15.44362 -15.05596 -14.72249 -14.44709 -14.34124 -13.97146 -13.65273 -13.35673 -12.96790 -12.73501 -12.62401 -11.99905 -11.75379 -11.69037 -11.55190 -11.23196 -11.02180 -10.89186 -10.80969 -10.74337 -10.61669 -10.50052 -10.17886 -10.05080 -10.01577 -9.90704 -9.84619 -9.63220 -9.29352 -8.64968 -7.84357 -6.95748 -6.06589 -3.81351 3.32200 3.38949 3.42579 3.76085 4.19767 4.31919 4.81600 4.85753 4.91723 5.00834 5.21452 5.27223 5.30818 5.31562 5.49248 5.52105 5.52420 5.61738 5.62947 5.73980 5.78449 5.82665 5.85500 5.88520 6.13368 6.19292 6.23934 6.24292 6.25503 6.27663 6.29403 6.46552 6.57323 6.62290 6.71181 6.80853 6.96278 6.99531 7.21886 7.30534 7.65969 8.32943 9.13234 9.23287 9.73664 10.38245 11.02425 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.020247 B = 0.004923 C = 0.004174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.605484 B = 5686.569386 C = 6706.817299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.389 6.389 3 C 0.091 3.909 4 H 0.058 0.942 5 C -0.137 4.137 6 C -0.113 4.113 7 C -0.120 4.120 8 C -0.060 4.060 9 H 0.073 0.927 10 C -0.129 4.129 11 C 0.486 3.514 12 O -0.530 6.530 13 N -0.431 5.431 14 C -0.349 4.349 15 H 0.074 0.926 16 C 0.076 3.924 17 N -0.833 5.833 18 Si 0.911 3.089 19 H -0.275 1.275 20 H -0.287 1.287 21 H -0.279 1.279 22 C 0.077 3.923 23 C -0.175 4.175 24 C -0.209 4.209 25 C -0.110 4.110 26 H 0.039 0.961 27 H 0.081 0.919 28 H 0.038 0.962 29 H 0.054 0.946 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.102 0.898 34 H 0.050 0.950 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.263 0.737 38 H 0.102 0.898 39 H 0.106 0.894 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.089 0.911 43 H 0.067 0.933 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.439 -9.992 -0.586 12.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.308 6.308 3 C 0.033 3.967 4 H 0.076 0.924 5 C -0.175 4.175 6 C -0.151 4.151 7 C -0.157 4.157 8 C -0.079 4.079 9 H 0.091 0.909 10 C -0.169 4.169 11 C 0.274 3.726 12 O -0.408 6.408 13 N -0.152 5.152 14 C -0.476 4.476 15 H 0.092 0.908 16 C -0.134 4.134 17 N -0.467 5.467 18 Si 0.738 3.262 19 H -0.201 1.201 20 H -0.213 1.213 21 H -0.205 1.205 22 C -0.029 4.029 23 C -0.213 4.213 24 C -0.248 4.248 25 C -0.147 4.147 26 H 0.058 0.942 27 H 0.099 0.901 28 H 0.057 0.943 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.120 0.880 34 H 0.069 0.931 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.073 0.927 38 H 0.119 0.881 39 H 0.124 0.876 40 H 0.101 0.899 41 H 0.101 0.899 42 H 0.108 0.892 43 H 0.086 0.914 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.746 -9.596 -0.121 12.333 hybrid contribution 0.050 0.940 -0.033 0.942 sum -7.696 -8.657 -0.154 11.584 Atomic orbital electron populations 1.22732 0.81774 1.02209 0.99783 1.87894 1.19091 1.28703 1.95114 1.22192 0.95113 0.83572 0.95787 0.92351 1.22037 1.00653 0.98112 0.96719 1.21474 0.97840 0.95224 1.00571 1.21740 0.95761 1.04557 0.93682 1.20750 0.95841 0.94379 0.96950 0.90888 1.21642 0.96920 0.97837 1.00522 1.19787 0.81309 0.89362 0.82168 1.90472 1.58751 1.44280 1.47301 1.42802 1.15017 1.04272 1.53129 1.18773 1.43895 0.87675 0.97255 0.90845 1.25190 0.94481 0.99262 0.94510 1.69813 1.43182 1.35855 0.97812 0.86309 0.78180 0.84289 0.77403 1.20064 1.21264 1.20508 1.21686 0.96370 0.92620 0.92239 1.23051 0.91147 1.03088 1.03972 1.23307 1.04567 1.01702 0.95217 1.21685 0.94689 0.98300 1.00062 0.94234 0.90056 0.94331 0.92726 0.91415 0.92251 0.92178 0.87962 0.93134 0.90905 0.90975 0.92694 0.88063 0.87575 0.89910 0.89889 0.89210 0.91390 0.91770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.82 101.05 1.09 1.41 16 2 O -0.39 -5.27 10.35 -35.23 -0.36 -5.63 16 3 C 0.09 1.24 2.61 -26.73 -0.07 1.17 16 4 H 0.06 0.78 7.79 -51.93 -0.40 0.37 16 5 C -0.14 -1.85 5.54 -26.73 -0.15 -2.00 16 6 C -0.11 -1.73 5.92 -26.74 -0.16 -1.89 16 7 C -0.12 -2.20 4.95 -26.73 -0.13 -2.33 16 8 C -0.06 -1.05 1.84 -90.62 -0.17 -1.21 16 9 H 0.07 1.37 7.95 -51.93 -0.41 0.96 16 10 C -0.13 -2.43 3.80 -27.88 -0.11 -2.54 16 11 C 0.49 11.93 6.68 -10.98 -0.07 11.86 16 12 O -0.53 -14.83 11.72 5.55 0.07 -14.76 16 13 N -0.43 -10.67 2.83 -107.72 -0.31 -10.98 16 14 C -0.35 -9.48 7.92 -14.94 -0.12 -9.59 16 15 H 0.07 1.95 7.26 -52.49 -0.38 1.57 16 16 C 0.08 2.12 4.39 -17.47 -0.08 2.04 16 17 N -0.83 -24.21 11.74 55.50 0.65 -23.55 16 18 Si 0.91 21.90 29.59 -169.99 -5.03 16.87 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 22 C 0.08 1.55 5.87 -67.92 -0.40 1.15 16 23 C -0.17 -3.18 9.80 -26.73 -0.26 -3.44 16 24 C -0.21 -3.59 10.36 -26.73 -0.28 -3.86 16 25 C -0.11 -1.60 4.85 -26.73 -0.13 -1.73 16 26 H 0.04 0.36 8.09 -51.93 -0.42 -0.06 16 27 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.04 0.35 7.87 -51.93 -0.41 -0.05 16 29 H 0.05 0.66 7.87 -51.93 -0.41 0.25 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.06 0.91 8.14 -51.92 -0.42 0.49 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.10 2.35 5.95 -51.93 -0.31 2.04 16 34 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.07 1.32 7.56 -51.93 -0.39 0.93 16 36 H 0.07 1.23 8.11 -51.93 -0.42 0.81 16 37 H 0.26 7.38 8.32 -40.82 -0.34 7.04 16 38 H 0.10 1.82 6.96 -51.93 -0.36 1.46 16 39 H 0.11 2.14 6.72 -51.93 -0.35 1.79 16 40 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 41 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 42 H 0.09 1.66 8.14 -51.93 -0.42 1.23 16 43 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 344.76 15.07 5.20 5.20 Total: -1.00 -31.05 344.76 -8.44 -39.49 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -7.63 Total: 4.33 kcal Atomic # 6 Polarization: -9.94 SS G_CDS: -1.02 Total: -10.96 kcal Atomic # 7 Polarization: -34.88 SS G_CDS: 0.35 Total: -34.53 kcal Atomic # 8 Polarization: -20.10 SS G_CDS: -0.30 Total: -20.40 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.03 Total: 16.87 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.05 -8.44 -39.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332151664.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.180 kcal (2) G-P(sol) polarization free energy of solvation -31.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds