Wall clock time and date at job start Tue Mar 31 2020 05:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09012 * 109.49081 * 2 1 4 4 O 1.42896 * 109.48317 * 239.96975 * 2 1 3 5 5 C 1.42898 * 114.10070 * 178.85881 * 4 2 1 6 6 C 1.53087 * 109.41736 * 61.15826 * 5 4 2 7 7 C 1.53177 * 109.16160 * 302.39124 * 6 5 4 8 8 C 1.53098 * 109.48129 * 120.02388 * 2 1 3 9 9 H 1.08997 * 109.57230 * 297.52917 * 8 2 1 10 10 C 1.50697 * 109.52019 * 57.68766 * 8 2 1 11 11 O 1.21281 * 119.99792 * 25.78428 * 10 8 2 12 12 N 1.34772 * 119.99852 * 205.78319 * 10 8 2 13 13 C 1.46929 * 120.62979 * 174.78217 * 12 10 8 14 14 C 1.53196 * 108.77573 * 233.58687 * 13 12 10 15 15 C 1.53043 * 109.31123 * 305.36634 * 14 13 12 16 16 C 1.50703 * 109.45916 * 181.38633 * 15 14 13 17 17 H 1.07997 * 119.99779 * 359.96889 * 16 15 14 18 18 C 1.37879 * 119.99652 * 180.24760 * 16 15 14 19 19 N 1.31510 * 120.00210 * 359.72632 * 18 16 15 20 20 Si 1.86800 * 119.99714 * 179.72004 * 18 16 15 21 21 H 1.48501 * 109.46988 * 89.99729 * 20 18 16 22 22 H 1.48489 * 109.47476 * 210.00001 * 20 18 16 23 23 H 1.48499 * 109.47086 * 330.00584 * 20 18 16 24 24 C 1.53037 * 109.52772 * 61.37100 * 15 14 13 25 25 C 1.46926 * 120.63221 * 354.75847 * 12 10 8 26 26 H 1.09001 * 109.46694 * 299.97485 * 1 2 3 27 27 H 1.08998 * 109.46846 * 59.97294 * 1 2 3 28 28 H 1.09000 * 109.47071 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.48257 * 301.17347 * 5 4 2 30 30 H 1.09003 * 109.49035 * 181.14709 * 5 4 2 31 31 H 1.09004 * 109.52330 * 182.48859 * 6 5 4 32 32 H 1.08996 * 109.57799 * 62.32499 * 6 5 4 33 33 H 1.09004 * 109.54339 * 297.11425 * 7 6 5 34 34 H 1.09001 * 109.54790 * 176.84767 * 7 6 5 35 35 H 1.08994 * 109.58625 * 113.80409 * 13 12 10 36 36 H 1.08996 * 109.70591 * 353.44253 * 13 12 10 37 37 H 1.08994 * 109.49933 * 185.41374 * 14 13 12 38 38 H 1.08997 * 109.52441 * 65.32854 * 14 13 12 39 39 H 1.08999 * 109.46094 * 301.35424 * 15 14 13 40 40 H 0.97008 * 119.99843 * 179.97438 * 19 18 16 41 41 H 1.08999 * 109.49682 * 58.58116 * 24 15 14 42 42 H 1.09001 * 109.49869 * 178.67714 * 24 15 14 43 43 H 1.09002 * 109.59104 * 246.20017 * 25 12 10 44 44 H 1.09004 * 109.58342 * 6.48689 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0277 0.0000 4 8 2.0066 -0.6742 -1.1663 5 6 3.4307 -0.7093 -1.2790 6 6 4.0177 -1.4600 -0.0808 7 6 3.5712 -0.7708 1.2122 8 6 2.0406 -0.7222 1.2497 9 1 1.7148 -0.1851 2.1405 10 6 1.4927 -2.1257 1.2793 11 8 1.1798 -2.6764 0.2450 12 7 1.3506 -2.7689 2.4550 13 6 0.7132 -4.0915 2.5125 14 6 -0.4250 -4.0462 3.5369 15 6 0.1210 -3.5527 4.8787 16 6 -0.9889 -3.5392 5.8981 17 1 -1.9840 -3.8508 5.6169 18 6 -0.7351 -3.1236 7.1880 19 7 0.4766 -2.7441 7.5302 20 14 -2.1127 -3.0995 8.4495 21 1 -2.1682 -4.4093 9.1469 22 1 -1.8587 -2.0221 9.4392 23 1 -3.4063 -2.8480 7.7650 24 6 0.6796 -2.1374 4.7144 25 6 1.8306 -2.1612 3.7036 26 1 -0.3633 0.5135 0.8902 27 1 -0.3633 0.5142 -0.8897 28 1 -0.3633 -1.0277 -0.0005 29 1 3.8193 0.3090 -1.2958 30 1 3.7101 -1.2202 -2.2004 31 1 5.1059 -1.4497 -0.1420 32 1 3.6623 -2.4904 -0.0857 33 1 3.9690 0.2437 1.2407 34 1 3.9392 -1.3325 2.0707 35 1 1.4474 -4.8381 2.8150 36 1 0.3124 -4.3493 1.5322 37 1 -0.8439 -5.0449 3.6597 38 1 -1.2021 -3.3661 3.1881 39 1 0.9148 -4.2196 5.2151 40 1 0.6550 -2.4514 8.4377 41 1 -0.1076 -1.4752 4.3541 42 1 1.0470 -1.7774 5.6754 43 1 2.6559 -2.7504 4.1033 44 1 2.1690 -1.1436 3.5082 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335206490.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:27 Heat of formation + Delta-G solvation = -97.120446 kcal Electronic energy + Delta-G solvation = -23866.931733 eV Core-core repulsion = 20590.478976 eV Total energy + Delta-G solvation = -3276.452757 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.58189 -38.40943 -36.53095 -33.88913 -33.29415 -32.72060 -31.13047 -30.05614 -27.92577 -26.23189 -24.65516 -23.10555 -22.54679 -21.97634 -21.14997 -19.37289 -18.02970 -16.99863 -16.26115 -16.21715 -15.57182 -15.41182 -14.88209 -14.61679 -14.39300 -13.88381 -13.56601 -13.12693 -12.96717 -12.69648 -12.59439 -12.53264 -12.29364 -12.00115 -11.92026 -11.63242 -11.51423 -11.27660 -11.06694 -10.96013 -10.71195 -10.61442 -10.39817 -10.34991 -10.10977 -9.65597 -9.40975 -9.17505 -9.09495 -8.86957 -8.39375 -7.92881 -6.05264 -4.11324 3.08274 3.26627 3.33775 3.37368 3.49593 3.90721 4.39135 4.59137 4.72845 4.79382 4.92636 5.00804 5.23870 5.27905 5.33084 5.35484 5.51991 5.61058 5.67180 5.71957 5.77132 5.82175 5.84774 5.96960 6.02203 6.05291 6.09715 6.16627 6.22618 6.30499 6.39089 6.47291 6.66504 6.91108 7.04087 7.16105 7.27053 7.38615 7.64847 7.90173 7.99421 8.03258 8.38430 8.70279 8.92182 9.53922 11.00152 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.031231 B = 0.004336 C = 0.004303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.324892 B = 6455.724169 C = 6505.328856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.110 3.890 3 H 0.059 0.941 4 O -0.357 6.357 5 C 0.065 3.935 6 C -0.158 4.158 7 C -0.111 4.111 8 C -0.145 4.145 9 H 0.101 0.899 10 C 0.520 3.480 11 O -0.535 6.535 12 N -0.603 5.603 13 C 0.113 3.887 14 C -0.123 4.123 15 C 0.049 3.951 16 C -0.512 4.512 17 H 0.055 0.945 18 C 0.062 3.938 19 N -0.892 5.892 20 Si 0.890 3.110 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.275 1.275 24 C -0.124 4.124 25 C 0.102 3.898 26 H 0.068 0.932 27 H 0.061 0.939 28 H 0.075 0.925 29 H 0.043 0.957 30 H 0.089 0.911 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.056 0.944 36 H 0.077 0.923 37 H 0.059 0.941 38 H 0.051 0.949 39 H 0.026 0.974 40 H 0.260 0.740 41 H 0.038 0.962 42 H 0.104 0.896 43 H 0.060 0.940 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.981 6.266 -11.753 15.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.051 3.949 3 H 0.077 0.923 4 O -0.275 6.275 5 C -0.012 4.012 6 C -0.196 4.196 7 C -0.148 4.148 8 C -0.167 4.167 9 H 0.119 0.881 10 C 0.308 3.692 11 O -0.412 6.412 12 N -0.336 5.336 13 C -0.009 4.009 14 C -0.161 4.161 15 C 0.031 3.969 16 C -0.550 4.550 17 H 0.073 0.927 18 C -0.139 4.139 19 N -0.531 5.531 20 Si 0.718 3.282 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.200 1.200 24 C -0.163 4.163 25 C -0.020 4.020 26 H 0.086 0.914 27 H 0.080 0.920 28 H 0.094 0.906 29 H 0.061 0.939 30 H 0.107 0.893 31 H 0.089 0.911 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.075 0.925 36 H 0.095 0.905 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.045 0.955 40 H 0.070 0.930 41 H 0.057 0.943 42 H 0.122 0.878 43 H 0.078 0.922 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 6.779 5.945 -12.275 15.231 hybrid contribution -0.429 0.178 1.280 1.362 sum 6.351 6.123 -10.994 14.096 Atomic orbital electron populations 1.21859 0.92919 1.04197 1.01910 1.21808 0.95435 0.93516 0.84096 0.92271 1.88058 1.19881 1.77821 1.41739 1.22459 0.82025 0.98594 0.98152 1.22200 1.00552 1.01542 0.95290 1.21533 0.92952 1.01584 0.98767 1.22122 0.97434 0.95852 1.01262 0.88065 1.20170 0.78412 0.87327 0.83341 1.90675 1.50621 1.67833 1.32064 1.48263 1.58694 1.19599 1.07077 1.21638 0.95588 0.83183 1.00475 1.22003 0.96359 1.00858 0.96883 1.18623 0.95880 0.92297 0.90142 1.21219 0.95756 1.43480 0.94519 0.92717 1.24950 0.95463 0.95195 0.98304 1.69836 1.19575 1.44842 1.18893 0.86622 0.82565 0.77688 0.81308 1.20711 1.21253 1.19972 1.22019 0.94963 1.00796 0.98497 1.22057 0.98678 0.96768 0.84493 0.91359 0.91986 0.90565 0.93852 0.89270 0.91096 0.90491 0.90923 0.90795 0.92543 0.90479 0.92256 0.93023 0.95541 0.92999 0.94291 0.87843 0.92155 0.91495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.24 37.16 0.34 -1.72 16 2 C 0.11 1.47 2.84 -26.68 -0.08 1.39 16 3 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 4 O -0.36 -5.35 8.99 -55.63 -0.50 -5.85 16 5 C 0.06 0.75 6.84 37.20 0.25 1.01 16 6 C -0.16 -1.86 5.81 -26.59 -0.15 -2.01 16 7 C -0.11 -1.28 5.33 -26.55 -0.14 -1.42 16 8 C -0.15 -1.99 1.73 -91.63 -0.16 -2.15 16 9 H 0.10 1.31 6.44 -51.93 -0.33 0.98 16 10 C 0.52 8.96 5.10 -10.99 -0.06 8.91 16 11 O -0.53 -10.65 12.80 -14.84 -0.19 -10.84 16 12 N -0.60 -10.77 2.97 -172.76 -0.51 -11.28 16 13 C 0.11 2.10 6.41 -3.71 -0.02 2.08 16 14 C -0.12 -2.52 5.30 -26.61 -0.14 -2.66 16 15 C 0.05 1.16 2.07 -91.73 -0.19 0.97 16 16 C -0.51 -13.53 8.56 -34.44 -0.29 -13.82 16 17 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 18 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 19 N -0.89 -24.19 11.30 55.43 0.63 -23.56 16 20 Si 0.89 20.68 29.54 -169.99 -5.02 15.66 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 24 C -0.12 -2.68 5.15 -26.61 -0.14 -2.82 16 25 C 0.10 1.79 5.90 -3.71 -0.02 1.77 16 26 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.08 1.26 6.31 -51.93 -0.33 0.93 16 29 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.08 1.12 7.00 -51.93 -0.36 0.76 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.87 7.52 -51.93 -0.39 0.48 16 35 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.08 1.43 7.05 -51.93 -0.37 1.07 16 37 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 41 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.10 2.49 6.02 -51.93 -0.31 2.18 16 43 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.07 1.00 5.16 -51.93 -0.27 0.73 16 LS Contribution 329.90 15.07 4.97 4.97 Total: -1.00 -29.28 329.90 -8.92 -38.20 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -7.40 Total: 1.64 kcal Atomic # 6 Polarization: -8.05 SS G_CDS: -0.89 Total: -8.94 kcal Atomic # 7 Polarization: -34.96 SS G_CDS: 0.11 Total: -34.84 kcal Atomic # 8 Polarization: -15.99 SS G_CDS: -0.69 Total: -16.68 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -29.28 -8.92 -38.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335206490.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.925 kcal (2) G-P(sol) polarization free energy of solvation -29.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds