Wall clock time and date at job start Tue Mar 31 2020 05:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09012 * 109.49081 * 2 1 4 4 O 1.42896 * 109.48317 * 239.96975 * 2 1 3 5 5 C 1.42898 * 114.10070 * 178.85881 * 4 2 1 6 6 C 1.53087 * 109.41736 * 61.15826 * 5 4 2 7 7 C 1.53177 * 109.16160 * 302.39124 * 6 5 4 8 8 C 1.53098 * 109.48129 * 120.02388 * 2 1 3 9 9 H 1.08997 * 109.57230 * 297.52917 * 8 2 1 10 10 C 1.50697 * 109.52019 * 57.68766 * 8 2 1 11 11 O 1.21281 * 119.99792 * 25.78428 * 10 8 2 12 12 N 1.34772 * 119.99852 * 205.78319 * 10 8 2 13 13 C 1.46929 * 120.62979 * 174.78217 * 12 10 8 14 14 C 1.53196 * 108.77573 * 233.58687 * 13 12 10 15 15 C 1.53043 * 109.31123 * 305.36634 * 14 13 12 16 16 C 1.50703 * 109.45916 * 181.38633 * 15 14 13 17 17 H 1.07997 * 119.99779 * 359.96889 * 16 15 14 18 18 C 1.37879 * 119.99652 * 180.24760 * 16 15 14 19 19 N 1.31510 * 120.00210 * 359.72632 * 18 16 15 20 20 Si 1.86800 * 119.99714 * 179.72004 * 18 16 15 21 21 H 1.48501 * 109.46988 * 89.99729 * 20 18 16 22 22 H 1.48489 * 109.47476 * 210.00001 * 20 18 16 23 23 H 1.48499 * 109.47086 * 330.00584 * 20 18 16 24 24 C 1.53037 * 109.52772 * 61.37100 * 15 14 13 25 25 C 1.46926 * 120.63221 * 354.75847 * 12 10 8 26 26 H 1.09001 * 109.46694 * 299.97485 * 1 2 3 27 27 H 1.08998 * 109.46846 * 59.97294 * 1 2 3 28 28 H 1.09000 * 109.47071 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.48257 * 301.17347 * 5 4 2 30 30 H 1.09003 * 109.49035 * 181.14709 * 5 4 2 31 31 H 1.09004 * 109.52330 * 182.48859 * 6 5 4 32 32 H 1.08996 * 109.57799 * 62.32499 * 6 5 4 33 33 H 1.09004 * 109.54339 * 297.11425 * 7 6 5 34 34 H 1.09001 * 109.54790 * 176.84767 * 7 6 5 35 35 H 1.08994 * 109.58625 * 113.80409 * 13 12 10 36 36 H 1.08996 * 109.70591 * 353.44253 * 13 12 10 37 37 H 1.08994 * 109.49933 * 185.41374 * 14 13 12 38 38 H 1.08997 * 109.52441 * 65.32854 * 14 13 12 39 39 H 1.08999 * 109.46094 * 301.35424 * 15 14 13 40 40 H 0.97008 * 119.99843 * 179.97438 * 19 18 16 41 41 H 1.08999 * 109.49682 * 58.58116 * 24 15 14 42 42 H 1.09001 * 109.49869 * 178.67714 * 24 15 14 43 43 H 1.09002 * 109.59104 * 246.20017 * 25 12 10 44 44 H 1.09004 * 109.58342 * 6.48689 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0277 0.0000 4 8 2.0066 -0.6742 -1.1663 5 6 3.4307 -0.7093 -1.2790 6 6 4.0177 -1.4600 -0.0808 7 6 3.5712 -0.7708 1.2122 8 6 2.0406 -0.7222 1.2497 9 1 1.7148 -0.1851 2.1405 10 6 1.4927 -2.1257 1.2793 11 8 1.1798 -2.6764 0.2450 12 7 1.3506 -2.7689 2.4550 13 6 0.7132 -4.0915 2.5125 14 6 -0.4250 -4.0462 3.5369 15 6 0.1210 -3.5527 4.8787 16 6 -0.9889 -3.5392 5.8981 17 1 -1.9840 -3.8508 5.6169 18 6 -0.7351 -3.1236 7.1880 19 7 0.4766 -2.7441 7.5302 20 14 -2.1127 -3.0995 8.4495 21 1 -2.1682 -4.4093 9.1469 22 1 -1.8587 -2.0221 9.4392 23 1 -3.4063 -2.8480 7.7650 24 6 0.6796 -2.1374 4.7144 25 6 1.8306 -2.1612 3.7036 26 1 -0.3633 0.5135 0.8902 27 1 -0.3633 0.5142 -0.8897 28 1 -0.3633 -1.0277 -0.0005 29 1 3.8193 0.3090 -1.2958 30 1 3.7101 -1.2202 -2.2004 31 1 5.1059 -1.4497 -0.1420 32 1 3.6623 -2.4904 -0.0857 33 1 3.9690 0.2437 1.2407 34 1 3.9392 -1.3325 2.0707 35 1 1.4474 -4.8381 2.8150 36 1 0.3124 -4.3493 1.5322 37 1 -0.8439 -5.0449 3.6597 38 1 -1.2021 -3.3661 3.1881 39 1 0.9148 -4.2196 5.2151 40 1 0.6550 -2.4514 8.4377 41 1 -0.1076 -1.4752 4.3541 42 1 1.0470 -1.7774 5.6754 43 1 2.6559 -2.7504 4.1033 44 1 2.1690 -1.1436 3.5082 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335206490.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:26 Heat of formation + Delta-G solvation = -112.922454 kcal Electronic energy + Delta-G solvation = -23867.616959 eV Core-core repulsion = 20590.478976 eV Total energy + Delta-G solvation = -3277.137984 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.79836 -39.68772 -38.05464 -35.37285 -34.69401 -33.70997 -32.85433 -31.67464 -29.02211 -27.94851 -25.80340 -24.62056 -24.02825 -23.13069 -22.40903 -20.90791 -19.44432 -18.54118 -17.93741 -17.31075 -16.79678 -16.59813 -16.44418 -16.07122 -15.53387 -15.11764 -14.90042 -14.87335 -14.40765 -14.34358 -13.84036 -13.67950 -13.58899 -13.24307 -13.11908 -13.05311 -12.91711 -12.79282 -12.59602 -12.43975 -12.14874 -12.00867 -11.92856 -11.62854 -11.47117 -11.31055 -11.00511 -10.88345 -10.50252 -10.37726 -10.19618 -9.46310 -8.07742 -6.20953 1.41378 1.43731 1.52479 1.75759 2.14074 2.44338 2.95409 3.18754 3.49957 3.73661 3.79997 3.95105 4.05262 4.16612 4.24340 4.32202 4.39250 4.39683 4.46925 4.49971 4.57339 4.63623 4.74904 4.75511 4.78245 4.84586 4.86954 4.93902 4.98626 5.06374 5.15301 5.19199 5.25768 5.29196 5.32678 5.44549 5.58239 5.67377 5.98740 6.14505 6.39562 6.46546 6.60825 6.88099 7.33680 7.46788 8.95605 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.031231 B = 0.004336 C = 0.004303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.324892 B = 6455.724169 C = 6505.328856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.107 3.893 3 H 0.093 0.907 4 O -0.388 6.388 5 C 0.059 3.941 6 C -0.156 4.156 7 C -0.109 4.109 8 C -0.144 4.144 9 H 0.113 0.887 10 C 0.518 3.482 11 O -0.564 6.564 12 N -0.609 5.609 13 C 0.119 3.881 14 C -0.112 4.112 15 C 0.046 3.954 16 C -0.536 4.536 17 H 0.045 0.955 18 C 0.020 3.980 19 N -0.911 5.911 20 Si 0.948 3.052 21 H -0.278 1.278 22 H -0.281 1.281 23 H -0.274 1.274 24 C -0.115 4.115 25 C 0.115 3.885 26 H 0.081 0.919 27 H 0.071 0.929 28 H 0.039 0.961 29 H 0.072 0.928 30 H 0.093 0.907 31 H 0.097 0.903 32 H 0.040 0.960 33 H 0.106 0.894 34 H 0.072 0.928 35 H 0.063 0.937 36 H 0.075 0.925 37 H 0.060 0.940 38 H 0.041 0.959 39 H 0.001 0.999 40 H 0.262 0.738 41 H 0.029 0.971 42 H 0.080 0.920 43 H 0.062 0.938 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.072 8.078 -12.029 16.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.049 3.951 3 H 0.111 0.889 4 O -0.307 6.307 5 C -0.018 4.018 6 C -0.193 4.193 7 C -0.147 4.147 8 C -0.165 4.165 9 H 0.131 0.869 10 C 0.308 3.692 11 O -0.443 6.443 12 N -0.342 5.342 13 C -0.004 4.004 14 C -0.150 4.150 15 C 0.028 3.972 16 C -0.574 4.574 17 H 0.064 0.936 18 C -0.179 4.179 19 N -0.550 5.550 20 Si 0.774 3.226 21 H -0.204 1.204 22 H -0.206 1.206 23 H -0.199 1.199 24 C -0.153 4.153 25 C -0.007 4.007 26 H 0.099 0.901 27 H 0.090 0.910 28 H 0.058 0.942 29 H 0.090 0.910 30 H 0.111 0.889 31 H 0.115 0.885 32 H 0.059 0.941 33 H 0.124 0.876 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.093 0.907 37 H 0.079 0.921 38 H 0.060 0.940 39 H 0.019 0.981 40 H 0.071 0.929 41 H 0.048 0.952 42 H 0.099 0.901 43 H 0.080 0.920 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 7.878 7.760 -12.555 16.731 hybrid contribution -0.784 -0.425 1.334 1.604 sum 7.094 7.335 -11.221 15.167 Atomic orbital electron populations 1.21859 0.93799 1.02090 1.03099 1.21960 0.94929 0.94859 0.83393 0.88945 1.88023 1.21876 1.78421 1.42361 1.22665 0.80570 1.00274 0.98264 1.22177 1.02075 0.99431 0.95665 1.21613 0.91035 1.03520 0.98499 1.22223 0.99051 0.93060 1.02172 0.86914 1.20867 0.77465 0.88541 0.82349 1.90662 1.51742 1.68870 1.33009 1.48326 1.58890 1.19348 1.07592 1.21479 0.95096 0.84274 0.99509 1.21841 0.96739 1.00465 0.95977 1.18592 0.94547 0.93180 0.90894 1.21539 0.96160 1.43905 0.95803 0.93626 1.25598 0.97498 0.94903 0.99878 1.69941 1.20812 1.45012 1.19260 0.85720 0.80031 0.77741 0.79122 1.20439 1.20617 1.19862 1.21786 0.96000 0.98939 0.98612 1.21920 0.96784 0.98752 0.83267 0.90058 0.90974 0.94199 0.90972 0.88931 0.88505 0.94130 0.87558 0.90931 0.91891 0.90661 0.92150 0.94014 0.98091 0.92878 0.95166 0.90145 0.91991 0.88155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.92 9.24 71.98 0.67 -3.26 16 2 C 0.11 2.57 2.84 30.63 0.09 2.66 16 3 H 0.09 1.64 8.14 -2.38 -0.02 1.62 16 4 O -0.39 -10.94 8.99 -129.48 -1.16 -12.10 16 5 C 0.06 1.21 6.84 72.01 0.49 1.70 16 6 C -0.16 -3.27 5.81 30.68 0.18 -3.09 16 7 C -0.11 -2.14 5.33 30.71 0.16 -1.98 16 8 C -0.14 -3.58 1.73 -11.45 -0.02 -3.60 16 9 H 0.11 2.54 6.44 -2.39 -0.02 2.53 16 10 C 0.52 17.44 5.10 87.66 0.45 17.89 16 11 O -0.56 -22.59 12.80 16.47 0.21 -22.38 16 12 N -0.61 -21.39 2.97 -818.90 -2.43 -23.83 16 13 C 0.12 4.45 6.41 86.36 0.55 5.01 16 14 C -0.11 -4.69 5.30 30.67 0.16 -4.53 16 15 C 0.05 2.23 2.07 -11.51 -0.02 2.21 16 16 C -0.54 -28.86 8.56 25.60 0.22 -28.64 16 17 H 0.05 2.47 7.74 -2.91 -0.02 2.45 16 18 C 0.02 1.08 5.30 84.66 0.45 1.53 16 19 N -0.91 -49.66 11.30 21.45 0.24 -49.42 16 20 Si 0.95 42.48 29.54 68.60 2.03 44.51 16 21 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 22 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 23 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 24 C -0.11 -4.97 5.15 30.67 0.16 -4.81 16 25 C 0.11 3.89 5.90 86.36 0.51 4.40 16 26 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.04 1.31 6.31 -2.39 -0.02 1.30 16 29 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.09 1.78 8.14 -2.39 -0.02 1.77 16 31 H 0.10 1.50 8.14 -2.38 -0.02 1.48 16 32 H 0.04 1.14 7.00 -2.39 -0.02 1.13 16 33 H 0.11 1.44 8.14 -2.38 -0.02 1.42 16 34 H 0.07 1.46 7.52 -2.39 -0.02 1.45 16 35 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 36 H 0.07 2.85 7.05 -2.39 -0.02 2.83 16 37 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 38 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 40 H 0.26 13.61 8.31 -92.70 -0.77 12.84 16 41 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.08 3.89 6.02 -2.39 -0.01 3.88 16 43 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 44 H 0.10 2.74 5.16 -2.39 -0.01 2.72 16 Total: -1.00 -64.38 329.90 3.89 -60.49 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: 0.97 Total: 17.23 kcal Atomic # 6 Polarization: -18.54 SS G_CDS: 4.04 Total: -14.50 kcal Atomic # 7 Polarization: -71.05 SS G_CDS: -2.19 Total: -73.25 kcal Atomic # 8 Polarization: -33.53 SS G_CDS: -0.95 Total: -34.48 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.51 kcal Total: -64.38 3.89 -60.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335206490.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.437 kcal (2) G-P(sol) polarization free energy of solvation -64.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds