Wall clock time and date at job start Tue Mar 31 2020 05:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.49143 * 2 1 4 4 O 1.42901 * 109.48029 * 120.02607 * 2 1 3 5 5 C 1.42908 * 114.09753 * 181.13907 * 4 2 1 6 6 C 1.53091 * 109.41313 * 298.84219 * 5 4 2 7 7 C 1.53181 * 109.16353 * 57.61271 * 6 5 4 8 8 C 1.53095 * 109.48012 * 239.96831 * 2 1 3 9 9 H 1.09001 * 109.57354 * 62.47204 * 8 2 1 10 10 C 1.50696 * 109.52287 * 302.31672 * 8 2 1 11 11 O 1.21280 * 119.99845 * 337.40421 * 10 8 2 12 12 N 1.34777 * 119.99947 * 157.40985 * 10 8 2 13 13 C 1.46929 * 120.62791 * 175.06172 * 12 10 8 14 14 C 1.53194 * 108.88943 * 126.29578 * 13 12 10 15 15 C 1.53355 * 109.14995 * 54.57834 * 14 13 12 16 16 C 1.50700 * 109.41860 * 178.67438 * 15 14 13 17 17 H 1.07996 * 120.00289 * 120.12417 * 16 15 14 18 18 C 1.37887 * 119.99704 * 300.12720 * 16 15 14 19 19 N 1.31514 * 119.99669 * 180.02562 * 18 16 15 20 20 Si 1.86794 * 120.00147 * 359.97438 * 18 16 15 21 21 H 1.48500 * 109.47045 * 90.00179 * 20 18 16 22 22 H 1.48495 * 109.47518 * 210.00196 * 20 18 16 23 23 H 1.48498 * 109.47110 * 330.00809 * 20 18 16 24 24 C 1.53035 * 109.60522 * 298.70839 * 15 14 13 25 25 C 1.46923 * 120.63190 * 355.03218 * 12 10 8 26 26 H 1.09005 * 109.46990 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46962 * 300.02986 * 1 2 3 28 28 H 1.09000 * 109.47202 * 60.02938 * 1 2 3 29 29 H 1.09000 * 109.47938 * 178.86063 * 5 4 2 30 30 H 1.09000 * 109.48862 * 58.83188 * 5 4 2 31 31 H 1.08993 * 109.52693 * 297.70061 * 6 5 4 32 32 H 1.09005 * 109.51810 * 177.51136 * 6 5 4 33 33 H 1.08995 * 109.54116 * 183.14909 * 7 6 5 34 34 H 1.08999 * 109.54287 * 62.88082 * 7 6 5 35 35 H 1.08996 * 109.58620 * 246.14751 * 13 12 10 36 36 H 1.08997 * 109.58956 * 6.44010 * 13 12 10 37 37 H 1.09004 * 109.49642 * 174.65763 * 14 13 12 38 38 H 1.09000 * 109.50067 * 294.75413 * 14 13 12 39 39 H 1.08993 * 109.42373 * 58.75022 * 15 14 13 40 40 H 0.96998 * 119.99612 * 180.02562 * 19 18 16 41 41 H 1.09004 * 109.49962 * 301.41927 * 24 15 14 42 42 H 1.09005 * 109.52562 * 181.34485 * 24 15 14 43 43 H 1.09002 * 109.58845 * 353.42591 * 25 12 10 44 44 H 1.09000 * 109.58443 * 113.70238 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 8 2.0066 -0.6741 1.1664 5 6 3.4308 -0.7093 1.2791 6 6 4.0176 -1.4601 0.0809 7 6 3.5711 -0.7709 -1.2122 8 6 2.0406 -0.7223 -1.2495 9 1 1.7149 -0.1854 -2.1404 10 6 1.4927 -2.1259 -1.2791 11 8 1.1256 -2.6553 -0.2515 12 7 1.4107 -2.7928 -2.4474 13 6 0.9808 -4.1975 -2.4788 14 6 -0.1870 -4.3369 -3.4605 15 6 0.2320 -3.7739 -4.8240 16 6 -0.9015 -3.9377 -5.8035 17 1 -1.3347 -3.0697 -6.2781 18 6 -1.3855 -5.1958 -6.0937 19 7 -2.3744 -5.3387 -6.9488 20 14 -0.6358 -6.6971 -5.2733 21 1 -1.3584 -6.9823 -4.0077 22 1 -0.7488 -7.8661 -6.1820 23 1 0.7960 -6.4365 -4.9777 24 6 0.5738 -2.2889 -4.6834 25 6 1.7488 -2.1289 -3.7137 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5143 0.8897 28 1 -0.3633 0.5134 -0.8902 29 1 3.7100 -1.2203 2.2005 30 1 3.8195 0.3089 1.2959 31 1 3.6613 -2.4902 0.0864 32 1 5.1059 -1.4498 0.1421 33 1 3.9392 -1.3327 -2.0706 34 1 3.9690 0.2435 -1.2408 35 1 1.8094 -4.8259 -2.8052 36 1 0.6598 -4.5038 -1.4833 37 1 -0.4521 -5.3891 -3.5635 38 1 -1.0458 -3.7799 -3.0858 39 1 1.1061 -4.3149 -5.1864 40 1 -2.7151 -6.2237 -7.1527 41 1 -0.2923 -1.7512 -4.2974 42 1 0.8484 -1.8844 -5.6577 43 1 1.9323 -1.0697 -3.5334 44 1 2.6415 -2.5870 -4.1394 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335206491.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:29 Heat of formation + Delta-G solvation = -87.409001 kcal Electronic energy + Delta-G solvation = -23931.024283 eV Core-core repulsion = 20654.992646 eV Total energy + Delta-G solvation = -3276.031637 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.73820 -38.60881 -36.77022 -34.05277 -33.29718 -32.81680 -31.41159 -30.59563 -28.06917 -26.49277 -24.74379 -23.04645 -22.91857 -22.13695 -21.15526 -19.62358 -18.18506 -17.13914 -16.72902 -16.29544 -15.77513 -15.57892 -15.08239 -14.79769 -14.42536 -13.99682 -13.82458 -13.35656 -13.16520 -12.98247 -12.71604 -12.53619 -12.45080 -12.17598 -12.14233 -11.93869 -11.88517 -11.66661 -11.17852 -11.00985 -10.83169 -10.73333 -10.47014 -10.19069 -10.03980 -9.75098 -9.58452 -9.38332 -9.14453 -9.05580 -8.56466 -8.12907 -6.10910 -4.10297 2.92357 3.23636 3.28152 3.34277 3.38422 3.79912 4.37344 4.44417 4.59511 4.64679 4.80358 4.85893 5.08971 5.19268 5.19970 5.24271 5.33675 5.46355 5.49584 5.56985 5.61122 5.65191 5.69359 5.73669 5.80754 5.85473 5.94697 5.96251 6.02798 6.10345 6.22727 6.25434 6.33736 6.55635 6.67152 6.79921 6.91656 7.15850 7.29214 7.46032 7.71512 7.79567 8.47558 8.53349 8.92660 9.51560 11.02388 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.031554 B = 0.004666 C = 0.004588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.164316 B = 5999.130264 C = 6101.573144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.110 3.890 3 H 0.060 0.940 4 O -0.356 6.356 5 C 0.064 3.936 6 C -0.159 4.159 7 C -0.109 4.109 8 C -0.146 4.146 9 H 0.102 0.898 10 C 0.520 3.480 11 O -0.527 6.527 12 N -0.605 5.605 13 C 0.108 3.892 14 C -0.134 4.134 15 C 0.015 3.985 16 C -0.514 4.514 17 H 0.073 0.927 18 C 0.070 3.930 19 N -0.901 5.901 20 Si 0.886 3.114 21 H -0.278 1.278 22 H -0.297 1.297 23 H -0.265 1.265 24 C -0.114 4.114 25 C 0.102 3.898 26 H 0.078 0.922 27 H 0.062 0.938 28 H 0.067 0.933 29 H 0.090 0.910 30 H 0.044 0.956 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.057 0.943 36 H 0.081 0.919 37 H 0.056 0.944 38 H 0.064 0.936 39 H 0.027 0.973 40 H 0.264 0.736 41 H 0.059 0.941 42 H 0.068 0.932 43 H 0.074 0.926 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.087 11.070 11.968 20.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.051 3.949 3 H 0.078 0.922 4 O -0.275 6.275 5 C -0.013 4.013 6 C -0.196 4.196 7 C -0.147 4.147 8 C -0.167 4.167 9 H 0.120 0.880 10 C 0.308 3.692 11 O -0.403 6.403 12 N -0.338 5.338 13 C -0.014 4.014 14 C -0.172 4.172 15 C -0.004 4.004 16 C -0.552 4.552 17 H 0.091 0.909 18 C -0.132 4.132 19 N -0.539 5.539 20 Si 0.716 3.284 21 H -0.205 1.205 22 H -0.225 1.225 23 H -0.190 1.190 24 C -0.152 4.152 25 C -0.020 4.020 26 H 0.097 0.903 27 H 0.081 0.919 28 H 0.086 0.914 29 H 0.108 0.892 30 H 0.063 0.937 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.076 0.924 36 H 0.100 0.900 37 H 0.074 0.926 38 H 0.082 0.918 39 H 0.045 0.955 40 H 0.074 0.926 41 H 0.078 0.922 42 H 0.087 0.913 43 H 0.093 0.907 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 12.641 10.566 12.558 20.716 hybrid contribution 0.481 -0.859 -0.100 0.989 sum 13.122 9.708 12.458 20.534 Atomic orbital electron populations 1.21886 0.92814 1.04433 1.01944 1.21812 0.95531 0.93498 0.84023 0.92207 1.88080 1.19862 1.77795 1.41722 1.22479 0.82015 0.98674 0.98175 1.22206 1.00690 1.01447 0.95305 1.21515 0.92790 1.01626 0.98784 1.22152 0.97487 0.95664 1.01408 0.88037 1.20205 0.78410 0.87375 0.83236 1.90696 1.48174 1.69026 1.32407 1.48167 1.66398 1.12889 1.06385 1.21706 0.97731 0.80730 1.01197 1.22405 0.96794 1.00846 0.97114 1.19172 0.97344 0.91647 0.92189 1.21033 1.16265 0.94287 1.23633 0.90869 1.25030 0.94531 0.98909 0.94727 1.69895 1.26171 1.23406 1.34399 0.86876 0.80458 0.82488 0.78578 1.20491 1.22485 1.19045 1.21828 0.96184 0.99704 0.97499 1.21955 0.98943 0.96693 0.84455 0.90319 0.91908 0.91411 0.89187 0.93749 0.90601 0.90975 0.90852 0.90810 0.92445 0.90016 0.92557 0.91756 0.95487 0.92640 0.92218 0.91317 0.90735 0.91875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.24 37.16 0.34 -1.60 16 2 C 0.11 1.34 2.84 -26.68 -0.08 1.26 16 3 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 4 O -0.36 -5.02 9.02 -55.51 -0.50 -5.52 16 5 C 0.06 0.68 6.84 37.20 0.25 0.94 16 6 C -0.16 -1.68 5.84 -26.59 -0.16 -1.83 16 7 C -0.11 -1.09 5.52 -26.55 -0.15 -1.23 16 8 C -0.15 -1.75 1.79 -91.63 -0.16 -1.92 16 9 H 0.10 1.07 6.16 -51.93 -0.32 0.75 16 10 C 0.52 8.32 5.11 -10.99 -0.06 8.26 16 11 O -0.53 -10.12 12.80 -14.72 -0.19 -10.31 16 12 N -0.60 -9.94 2.97 -172.77 -0.51 -10.45 16 13 C 0.11 2.00 6.43 -3.71 -0.02 1.98 16 14 C -0.13 -2.85 4.86 -26.45 -0.13 -2.98 16 15 C 0.02 0.34 1.66 -91.57 -0.15 0.19 16 16 C -0.51 -13.98 9.14 -34.44 -0.31 -14.30 16 17 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 18 C 0.07 1.97 5.45 -17.82 -0.10 1.88 16 19 N -0.90 -27.27 13.96 55.43 0.77 -26.50 16 20 Si 0.89 21.65 24.38 -169.99 -4.14 17.50 16 21 H -0.28 -6.69 6.85 56.52 0.39 -6.30 16 22 H -0.30 -7.32 7.11 56.52 0.40 -6.92 16 23 H -0.27 -6.13 6.53 56.52 0.37 -5.76 16 24 C -0.11 -2.05 5.30 -26.62 -0.14 -2.19 16 25 C 0.10 1.48 6.10 -3.72 -0.02 1.45 16 26 H 0.08 1.25 6.18 -51.93 -0.32 0.93 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 1.02 7.11 -51.93 -0.37 0.65 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.72 7.93 -51.93 -0.41 0.31 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.08 1.54 7.00 -51.93 -0.36 1.18 16 37 H 0.06 1.28 3.26 -51.93 -0.17 1.11 16 38 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 39 H 0.03 0.61 7.20 -51.93 -0.37 0.24 16 40 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 41 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 43 H 0.07 0.86 5.42 -51.93 -0.28 0.57 16 44 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 LS Contribution 323.99 15.07 4.88 4.88 Total: -1.00 -31.97 323.99 -7.85 -39.82 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -7.28 Total: 0.68 kcal Atomic # 6 Polarization: -9.22 SS G_CDS: -0.88 Total: -10.10 kcal Atomic # 7 Polarization: -37.21 SS G_CDS: 0.26 Total: -36.95 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: -0.69 Total: -15.84 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.14 Total: 17.50 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.97 -7.85 -39.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335206491.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.587 kcal (2) G-P(sol) polarization free energy of solvation -31.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds