Wall clock time and date at job start Tue Mar 31 2020 05:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.49143 * 2 1 4 4 O 1.42901 * 109.48029 * 120.02607 * 2 1 3 5 5 C 1.42908 * 114.09753 * 181.13907 * 4 2 1 6 6 C 1.53091 * 109.41313 * 298.84219 * 5 4 2 7 7 C 1.53181 * 109.16353 * 57.61271 * 6 5 4 8 8 C 1.53095 * 109.48012 * 239.96831 * 2 1 3 9 9 H 1.09001 * 109.57354 * 62.47204 * 8 2 1 10 10 C 1.50696 * 109.52287 * 302.31672 * 8 2 1 11 11 O 1.21280 * 119.99845 * 337.40421 * 10 8 2 12 12 N 1.34777 * 119.99947 * 157.40985 * 10 8 2 13 13 C 1.46929 * 120.62791 * 175.06172 * 12 10 8 14 14 C 1.53194 * 108.88943 * 126.29578 * 13 12 10 15 15 C 1.53355 * 109.14995 * 54.57834 * 14 13 12 16 16 C 1.50700 * 109.41860 * 178.67438 * 15 14 13 17 17 H 1.07996 * 120.00289 * 120.12417 * 16 15 14 18 18 C 1.37887 * 119.99704 * 300.12720 * 16 15 14 19 19 N 1.31514 * 119.99669 * 180.02562 * 18 16 15 20 20 Si 1.86794 * 120.00147 * 359.97438 * 18 16 15 21 21 H 1.48500 * 109.47045 * 90.00179 * 20 18 16 22 22 H 1.48495 * 109.47518 * 210.00196 * 20 18 16 23 23 H 1.48498 * 109.47110 * 330.00809 * 20 18 16 24 24 C 1.53035 * 109.60522 * 298.70839 * 15 14 13 25 25 C 1.46923 * 120.63190 * 355.03218 * 12 10 8 26 26 H 1.09005 * 109.46990 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46962 * 300.02986 * 1 2 3 28 28 H 1.09000 * 109.47202 * 60.02938 * 1 2 3 29 29 H 1.09000 * 109.47938 * 178.86063 * 5 4 2 30 30 H 1.09000 * 109.48862 * 58.83188 * 5 4 2 31 31 H 1.08993 * 109.52693 * 297.70061 * 6 5 4 32 32 H 1.09005 * 109.51810 * 177.51136 * 6 5 4 33 33 H 1.08995 * 109.54116 * 183.14909 * 7 6 5 34 34 H 1.08999 * 109.54287 * 62.88082 * 7 6 5 35 35 H 1.08996 * 109.58620 * 246.14751 * 13 12 10 36 36 H 1.08997 * 109.58956 * 6.44010 * 13 12 10 37 37 H 1.09004 * 109.49642 * 174.65763 * 14 13 12 38 38 H 1.09000 * 109.50067 * 294.75413 * 14 13 12 39 39 H 1.08993 * 109.42373 * 58.75022 * 15 14 13 40 40 H 0.96998 * 119.99612 * 180.02562 * 19 18 16 41 41 H 1.09004 * 109.49962 * 301.41927 * 24 15 14 42 42 H 1.09005 * 109.52562 * 181.34485 * 24 15 14 43 43 H 1.09002 * 109.58845 * 353.42591 * 25 12 10 44 44 H 1.09000 * 109.58443 * 113.70238 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 8 2.0066 -0.6741 1.1664 5 6 3.4308 -0.7093 1.2791 6 6 4.0176 -1.4601 0.0809 7 6 3.5711 -0.7709 -1.2122 8 6 2.0406 -0.7223 -1.2495 9 1 1.7149 -0.1854 -2.1404 10 6 1.4927 -2.1259 -1.2791 11 8 1.1256 -2.6553 -0.2515 12 7 1.4107 -2.7928 -2.4474 13 6 0.9808 -4.1975 -2.4788 14 6 -0.1870 -4.3369 -3.4605 15 6 0.2320 -3.7739 -4.8240 16 6 -0.9015 -3.9377 -5.8035 17 1 -1.3347 -3.0697 -6.2781 18 6 -1.3855 -5.1958 -6.0937 19 7 -2.3744 -5.3387 -6.9488 20 14 -0.6358 -6.6971 -5.2733 21 1 -1.3584 -6.9823 -4.0077 22 1 -0.7488 -7.8661 -6.1820 23 1 0.7960 -6.4365 -4.9777 24 6 0.5738 -2.2889 -4.6834 25 6 1.7488 -2.1289 -3.7137 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5143 0.8897 28 1 -0.3633 0.5134 -0.8902 29 1 3.7100 -1.2203 2.2005 30 1 3.8195 0.3089 1.2959 31 1 3.6613 -2.4902 0.0864 32 1 5.1059 -1.4498 0.1421 33 1 3.9392 -1.3327 -2.0706 34 1 3.9690 0.2435 -1.2408 35 1 1.8094 -4.8259 -2.8052 36 1 0.6598 -4.5038 -1.4833 37 1 -0.4521 -5.3891 -3.5635 38 1 -1.0458 -3.7799 -3.0858 39 1 1.1061 -4.3149 -5.1864 40 1 -2.7151 -6.2237 -7.1527 41 1 -0.2923 -1.7512 -4.2974 42 1 0.8484 -1.8844 -5.6577 43 1 1.9323 -1.0697 -3.5334 44 1 2.6415 -2.5870 -4.1394 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335206491.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:29 Heat of formation + Delta-G solvation = -107.936179 kcal Electronic energy + Delta-G solvation = -23931.914409 eV Core-core repulsion = 20654.992646 eV Total energy + Delta-G solvation = -3276.921763 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.82845 -39.77578 -38.16028 -35.43617 -34.65066 -33.70226 -33.24087 -32.01039 -29.10109 -28.10720 -25.73464 -24.56548 -24.25613 -23.11001 -22.36932 -21.06297 -19.44606 -18.89814 -18.12719 -17.30784 -16.94360 -16.65214 -16.42176 -16.18147 -15.60133 -15.21428 -15.04897 -14.86177 -14.81334 -14.31120 -13.96742 -13.74858 -13.69110 -13.58597 -13.31612 -13.13164 -12.95176 -12.82766 -12.60576 -12.30598 -12.11387 -11.98145 -11.81004 -11.59537 -11.47568 -11.32067 -11.12690 -11.08206 -10.70863 -10.45789 -10.21369 -9.50822 -8.31140 -6.34049 1.29269 1.32843 1.43031 1.74413 2.07554 2.30384 2.95968 3.04664 3.48297 3.74394 3.78890 3.89686 4.04988 4.06026 4.17174 4.23618 4.27408 4.34070 4.40700 4.41822 4.46769 4.58831 4.69056 4.72996 4.75954 4.79127 4.84338 4.85493 4.95501 4.96120 5.03685 5.06875 5.15215 5.17557 5.29593 5.34997 5.44080 5.63089 5.66813 5.72241 6.30340 6.47851 6.56512 6.73771 7.31592 7.32072 8.85707 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.031554 B = 0.004666 C = 0.004588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.164316 B = 5999.130264 C = 6101.573144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.105 3.895 3 H 0.095 0.905 4 O -0.391 6.391 5 C 0.057 3.943 6 C -0.157 4.157 7 C -0.106 4.106 8 C -0.142 4.142 9 H 0.124 0.876 10 C 0.516 3.484 11 O -0.565 6.565 12 N -0.610 5.610 13 C 0.116 3.884 14 C -0.128 4.128 15 C 0.014 3.986 16 C -0.516 4.516 17 H 0.036 0.964 18 C 0.011 3.989 19 N -0.951 5.951 20 Si 0.944 3.056 21 H -0.275 1.275 22 H -0.299 1.299 23 H -0.239 1.239 24 C -0.110 4.110 25 C 0.109 3.891 26 H 0.038 0.962 27 H 0.067 0.933 28 H 0.084 0.916 29 H 0.088 0.912 30 H 0.073 0.927 31 H 0.038 0.962 32 H 0.097 0.903 33 H 0.079 0.921 34 H 0.108 0.892 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.042 0.958 38 H 0.044 0.956 39 H 0.032 0.968 40 H 0.264 0.736 41 H 0.046 0.954 42 H 0.077 0.923 43 H 0.115 0.885 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.355 12.862 12.784 24.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.047 3.953 3 H 0.112 0.888 4 O -0.310 6.310 5 C -0.019 4.019 6 C -0.195 4.195 7 C -0.144 4.144 8 C -0.163 4.163 9 H 0.142 0.858 10 C 0.306 3.694 11 O -0.444 6.444 12 N -0.343 5.343 13 C -0.007 4.007 14 C -0.167 4.167 15 C -0.005 4.005 16 C -0.554 4.554 17 H 0.054 0.946 18 C -0.186 4.186 19 N -0.592 5.592 20 Si 0.771 3.229 21 H -0.202 1.202 22 H -0.227 1.227 23 H -0.162 1.162 24 C -0.149 4.149 25 C -0.013 4.013 26 H 0.057 0.943 27 H 0.086 0.914 28 H 0.103 0.897 29 H 0.107 0.893 30 H 0.091 0.909 31 H 0.057 0.943 32 H 0.115 0.885 33 H 0.098 0.902 34 H 0.127 0.873 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.060 0.940 38 H 0.063 0.937 39 H 0.050 0.950 40 H 0.073 0.927 41 H 0.065 0.935 42 H 0.095 0.905 43 H 0.132 0.868 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 15.940 12.388 13.378 24.218 hybrid contribution -0.620 -1.345 -0.351 1.522 sum 15.320 11.044 13.027 22.943 Atomic orbital electron populations 1.21890 0.94035 1.02076 1.03102 1.21987 0.94765 0.94987 0.83563 0.88779 1.88041 1.21873 1.78477 1.42637 1.22673 0.80594 1.00336 0.98338 1.22187 1.02100 0.99313 0.95904 1.21603 0.90763 1.03649 0.98384 1.22255 0.99087 0.92572 1.02372 0.85795 1.21011 0.77379 0.88734 0.82270 1.90683 1.49665 1.70218 1.33805 1.48281 1.66435 1.12107 1.07521 1.21460 0.96832 0.82822 0.99568 1.22252 0.97506 0.99473 0.97423 1.19165 0.95278 0.95004 0.91083 1.21423 1.17152 0.92923 1.23870 0.94608 1.25871 0.95024 1.02246 0.95409 1.70047 1.28305 1.24130 1.36675 0.85915 0.81104 0.78483 0.77366 1.20213 1.22726 1.16244 1.21743 0.97546 0.96315 0.99255 1.22050 0.97514 0.99187 0.82501 0.94296 0.91396 0.89693 0.89332 0.90902 0.94340 0.88502 0.90225 0.87342 0.91000 0.91034 0.93962 0.93715 0.95015 0.92687 0.93503 0.90451 0.86760 0.89887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.69 9.24 71.98 0.66 -3.02 16 2 C 0.10 2.23 2.84 30.63 0.09 2.32 16 3 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 4 O -0.39 -10.34 9.02 -129.59 -1.17 -11.51 16 5 C 0.06 1.06 6.84 72.01 0.49 1.56 16 6 C -0.16 -2.83 5.84 30.69 0.18 -2.65 16 7 C -0.11 -1.59 5.52 30.71 0.17 -1.42 16 8 C -0.14 -2.88 1.79 -11.45 -0.02 -2.90 16 9 H 0.12 1.95 6.16 -2.39 -0.01 1.93 16 10 C 0.52 15.59 5.11 87.66 0.45 16.04 16 11 O -0.57 -21.73 12.80 16.36 0.21 -21.52 16 12 N -0.61 -18.68 2.97 -818.93 -2.44 -21.11 16 13 C 0.12 4.14 6.43 86.36 0.56 4.70 16 14 C -0.13 -5.43 4.86 30.78 0.15 -5.28 16 15 C 0.01 0.59 1.66 -11.41 -0.02 0.57 16 16 C -0.52 -28.67 9.14 25.60 0.23 -28.44 16 17 H 0.04 2.19 7.99 -2.91 -0.02 2.17 16 18 C 0.01 0.65 5.45 84.66 0.46 1.11 16 19 N -0.95 -59.59 13.96 21.45 0.30 -59.29 16 20 Si 0.94 44.95 24.38 68.60 1.67 46.62 16 21 H -0.28 -12.89 6.85 99.48 0.68 -12.21 16 22 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 23 H -0.24 -10.25 6.53 99.48 0.65 -9.60 16 24 C -0.11 -3.77 5.30 30.67 0.16 -3.61 16 25 C 0.11 2.74 6.10 86.36 0.53 3.26 16 26 H 0.04 1.24 6.18 -2.38 -0.01 1.22 16 27 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.08 1.66 8.14 -2.39 -0.02 1.65 16 29 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.04 0.98 7.11 -2.39 -0.02 0.96 16 32 H 0.10 1.23 8.14 -2.38 -0.02 1.21 16 33 H 0.08 1.13 7.93 -2.39 -0.02 1.11 16 34 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 36 H 0.07 2.70 7.00 -2.39 -0.02 2.68 16 37 H 0.04 1.89 3.26 -2.38 -0.01 1.89 16 38 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.03 1.37 7.20 -2.39 -0.02 1.35 16 40 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 41 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 42 H 0.08 2.50 8.14 -2.38 -0.02 2.48 16 43 H 0.11 2.00 5.42 -2.39 -0.01 1.99 16 44 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -73.92 323.99 3.56 -70.36 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: 0.89 Total: 14.21 kcal Atomic # 6 Polarization: -21.86 SS G_CDS: 4.09 Total: -17.76 kcal Atomic # 7 Polarization: -78.27 SS G_CDS: -2.14 Total: -80.40 kcal Atomic # 8 Polarization: -32.07 SS G_CDS: -0.96 Total: -33.03 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 1.67 Total: 46.62 kcal Total: -73.92 3.56 -70.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335206491.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.575 kcal (2) G-P(sol) polarization free energy of solvation -73.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds