Wall clock time and date at job start Tue Mar 31 2020 05:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.48778 * 2 1 4 4 O 1.42899 * 109.47973 * 239.97031 * 2 1 3 5 5 C 1.42900 * 114.09797 * 178.85978 * 4 2 1 6 6 C 1.53089 * 109.41591 * 61.15408 * 5 4 2 7 7 C 1.53177 * 109.16544 * 302.39513 * 6 5 4 8 8 C 1.53093 * 109.47986 * 120.02385 * 2 1 3 9 9 H 1.09000 * 109.57175 * 57.66002 * 8 2 1 10 10 C 1.50694 * 109.52327 * 297.49950 * 8 2 1 11 11 O 1.21276 * 120.00208 * 337.57792 * 10 8 2 12 12 N 1.34783 * 119.99830 * 157.58044 * 10 8 2 13 13 C 1.46926 * 120.62911 * 355.03907 * 12 10 8 14 14 C 1.53184 * 108.77466 * 233.58407 * 13 12 10 15 15 C 1.53042 * 109.31734 * 305.36567 * 14 13 12 16 16 C 1.50696 * 109.46463 * 181.38113 * 15 14 13 17 17 H 1.08009 * 119.99889 * 0.02562 * 16 15 14 18 18 C 1.37874 * 120.00139 * 180.02562 * 16 15 14 19 19 N 1.31522 * 119.99953 * 179.73018 * 18 16 15 20 20 Si 1.86795 * 120.00123 * 0.02562 * 18 16 15 21 21 H 1.48509 * 109.46997 * 90.00058 * 20 18 16 22 22 H 1.48496 * 109.47469 * 209.99831 * 20 18 16 23 23 H 1.48498 * 109.47406 * 330.00415 * 20 18 16 24 24 C 1.53044 * 109.53515 * 61.36427 * 15 14 13 25 25 C 1.46924 * 120.62918 * 175.01436 * 12 10 8 26 26 H 1.09003 * 109.47097 * 299.97261 * 1 2 3 27 27 H 1.08998 * 109.47826 * 59.97220 * 1 2 3 28 28 H 1.08999 * 109.47415 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.48176 * 301.17479 * 5 4 2 30 30 H 1.08995 * 109.48221 * 181.14269 * 5 4 2 31 31 H 1.09003 * 109.52262 * 182.48685 * 6 5 4 32 32 H 1.09000 * 109.52213 * 62.29936 * 6 5 4 33 33 H 1.09001 * 109.54189 * 297.11210 * 7 6 5 34 34 H 1.08995 * 109.54311 * 176.84648 * 7 6 5 35 35 H 1.09001 * 109.58600 * 113.80011 * 13 12 10 36 36 H 1.08997 * 109.59091 * 353.37636 * 13 12 10 37 37 H 1.08997 * 109.50033 * 185.41304 * 14 13 12 38 38 H 1.08997 * 109.50061 * 65.31928 * 14 13 12 39 39 H 1.08996 * 109.46340 * 301.36054 * 15 14 13 40 40 H 0.97000 * 119.99588 * 179.97438 * 19 18 16 41 41 H 1.09001 * 109.49897 * 58.58532 * 24 15 14 42 42 H 1.08995 * 109.50035 * 178.68635 * 24 15 14 43 43 H 1.08995 * 109.59067 * 246.20214 * 25 12 10 44 44 H 1.09003 * 109.58959 * 6.63290 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0275 0.0000 4 8 2.0065 -0.6742 -1.1664 5 6 3.4306 -0.7094 -1.2790 6 6 4.0176 -1.4600 -0.0808 7 6 3.5710 -0.7708 1.2122 8 6 2.0405 -0.7222 1.2496 9 1 1.6443 -1.7374 1.2721 10 6 1.5902 0.0216 2.4804 11 8 1.2976 1.1962 2.4060 12 7 1.5126 -0.6185 3.6640 13 6 1.7587 -2.0645 3.7505 14 6 0.5641 -2.7272 4.4435 15 6 0.3220 -2.0490 5.7939 16 6 -0.8313 -2.7207 6.4936 17 1 -1.3404 -3.5487 6.0226 18 6 -1.2367 -2.2784 7.7349 19 7 -2.2467 -2.8612 8.3432 20 14 -0.3568 -0.8459 8.5491 21 1 -1.0138 0.4266 8.1560 22 1 -0.4199 -1.0003 10.0247 23 1 1.0629 -0.8250 8.1139 24 6 -0.0072 -0.5709 5.5724 25 6 1.1810 0.1164 4.8922 26 1 -0.3633 0.5134 0.8903 27 1 -0.3635 0.5142 -0.8897 28 1 -0.3634 -1.0276 -0.0005 29 1 3.8192 0.3089 -1.2958 30 1 3.7099 -1.2203 -2.2004 31 1 5.1058 -1.4497 -0.1421 32 1 3.6613 -2.4901 -0.0863 33 1 3.9689 0.2436 1.2408 34 1 3.9391 -1.3325 2.0706 35 1 2.6642 -2.2471 4.3292 36 1 1.8741 -2.4762 2.7479 37 1 0.7754 -3.7850 4.6004 38 1 -0.3231 -2.6218 3.8192 39 1 1.2182 -2.1331 6.4084 40 1 -2.5316 -2.5502 9.2167 41 1 -0.8890 -0.4857 4.9374 42 1 -0.2024 -0.0938 6.5328 43 1 2.0393 0.1117 5.5640 44 1 0.9151 1.1437 4.6429 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335206492.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:32 Heat of formation + Delta-G solvation = -93.456695 kcal Electronic energy + Delta-G solvation = -23623.871586 eV Core-core repulsion = 20347.577701 eV Total energy + Delta-G solvation = -3276.293885 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.68152 -38.88490 -37.07815 -34.13276 -33.41039 -32.82748 -31.46998 -30.63804 -28.18408 -26.54790 -24.92919 -23.07901 -22.89408 -22.13632 -20.90834 -19.77201 -18.55418 -17.37768 -16.78173 -16.36206 -15.91465 -15.39228 -15.21133 -14.93156 -14.54393 -14.12938 -13.81546 -13.50020 -13.29651 -13.00612 -12.83853 -12.61033 -12.56521 -12.24322 -12.18152 -12.05664 -11.91441 -11.50592 -11.22842 -11.13918 -11.02572 -10.77704 -10.50347 -10.21602 -10.07809 -9.78185 -9.75570 -9.51881 -9.26218 -9.10644 -8.58388 -8.23842 -6.12204 -4.11847 2.74484 3.14328 3.23324 3.32196 3.35958 3.66307 4.35608 4.40450 4.52146 4.60867 4.67287 4.86151 4.97502 5.10911 5.18181 5.26855 5.33824 5.36382 5.48710 5.55044 5.59509 5.60686 5.66286 5.69660 5.77122 5.80160 5.88150 5.88599 5.97142 6.07793 6.16886 6.22164 6.24104 6.52435 6.62659 6.75615 6.85017 7.07271 7.12612 7.43413 7.66142 7.70944 8.34017 8.46134 8.91394 9.49967 11.01073 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.031765 B = 0.004385 C = 0.004342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.249705 B = 6384.024251 C = 6447.609810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.107 3.893 3 H 0.070 0.930 4 O -0.378 6.378 5 C 0.059 3.941 6 C -0.153 4.153 7 C -0.111 4.111 8 C -0.141 4.141 9 H 0.104 0.896 10 C 0.522 3.478 11 O -0.551 6.551 12 N -0.598 5.598 13 C 0.100 3.900 14 C -0.114 4.114 15 C 0.015 3.985 16 C -0.515 4.515 17 H 0.074 0.926 18 C 0.069 3.931 19 N -0.900 5.900 20 Si 0.886 3.114 21 H -0.278 1.278 22 H -0.297 1.297 23 H -0.266 1.266 24 C -0.134 4.134 25 C 0.107 3.893 26 H 0.080 0.920 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.050 0.950 30 H 0.094 0.906 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.060 0.940 39 H 0.028 0.972 40 H 0.264 0.736 41 H 0.064 0.936 42 H 0.057 0.943 43 H 0.060 0.940 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.841 3.407 -15.985 20.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.050 3.950 3 H 0.088 0.912 4 O -0.297 6.297 5 C -0.018 4.018 6 C -0.191 4.191 7 C -0.149 4.149 8 C -0.162 4.162 9 H 0.122 0.878 10 C 0.310 3.690 11 O -0.429 6.429 12 N -0.331 5.331 13 C -0.022 4.022 14 C -0.153 4.153 15 C -0.004 4.004 16 C -0.552 4.552 17 H 0.092 0.908 18 C -0.132 4.132 19 N -0.538 5.538 20 Si 0.716 3.284 21 H -0.205 1.205 22 H -0.225 1.225 23 H -0.191 1.191 24 C -0.172 4.172 25 C -0.015 4.015 26 H 0.099 0.901 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.068 0.932 30 H 0.112 0.888 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.084 0.916 36 H 0.095 0.905 37 H 0.088 0.912 38 H 0.079 0.921 39 H 0.046 0.954 40 H 0.074 0.926 41 H 0.083 0.917 42 H 0.075 0.925 43 H 0.078 0.922 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 12.440 3.935 -15.980 20.630 hybrid contribution 0.535 0.735 0.963 1.325 sum 12.975 4.670 -15.018 20.388 Atomic orbital electron populations 1.21825 0.92521 1.02846 1.03255 1.21838 0.95482 0.94922 0.82805 0.91248 1.87951 1.20755 1.78246 1.42733 1.22574 0.81414 0.99600 0.98228 1.22193 1.01227 1.00723 0.94969 1.21531 0.92836 1.01884 0.98638 1.22041 0.97847 1.01976 0.94335 0.87835 1.20268 0.77347 0.87214 0.84153 1.90651 1.50325 1.16546 1.85410 1.48147 1.68118 1.09342 1.07469 1.22013 0.99652 0.79423 1.01120 1.21836 0.96014 0.99396 0.98016 1.19127 0.97757 0.90731 0.92785 1.21025 1.14686 1.17331 1.02195 0.90833 1.25032 0.94599 0.96553 0.97032 1.69900 1.26631 1.41773 1.15512 0.86873 0.80914 0.82919 0.77688 1.20487 1.22454 1.19058 1.22362 0.96606 0.99033 0.99178 1.21774 0.98567 0.96535 0.84666 0.90134 0.91778 0.91987 0.93208 0.88814 0.90482 0.90647 0.91216 0.90670 0.91630 0.90485 0.91187 0.92140 0.95428 0.92625 0.91681 0.92479 0.92153 0.89897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.31 37.16 0.35 -1.54 16 2 C 0.11 1.36 2.41 -26.68 -0.06 1.30 16 3 H 0.07 0.94 7.80 -51.93 -0.40 0.53 16 4 O -0.38 -4.52 10.41 -35.23 -0.37 -4.89 16 5 C 0.06 0.52 6.84 37.20 0.25 0.77 16 6 C -0.15 -1.24 6.14 -26.59 -0.16 -1.41 16 7 C -0.11 -1.12 5.29 -26.55 -0.14 -1.26 16 8 C -0.14 -1.74 1.42 -91.64 -0.13 -1.87 16 9 H 0.10 1.23 6.17 -51.93 -0.32 0.91 16 10 C 0.52 8.20 6.11 -10.99 -0.07 8.14 16 11 O -0.55 -10.19 14.41 5.56 0.08 -10.11 16 12 N -0.60 -9.67 2.97 -172.77 -0.51 -10.18 16 13 C 0.10 1.44 6.08 -3.71 -0.02 1.42 16 14 C -0.11 -2.05 5.30 -26.61 -0.14 -2.19 16 15 C 0.01 0.33 1.66 -91.73 -0.15 0.18 16 16 C -0.51 -13.91 9.14 -34.44 -0.31 -14.23 16 17 H 0.07 2.16 7.99 -52.48 -0.42 1.74 16 18 C 0.07 1.96 5.45 -17.82 -0.10 1.86 16 19 N -0.90 -27.14 13.96 55.43 0.77 -26.37 16 20 Si 0.89 21.43 24.38 -169.99 -4.14 17.28 16 21 H -0.28 -6.60 6.86 56.52 0.39 -6.21 16 22 H -0.30 -7.25 7.11 56.52 0.40 -6.85 16 23 H -0.27 -6.05 6.53 56.52 0.37 -5.68 16 24 C -0.13 -2.81 4.84 -26.61 -0.13 -2.94 16 25 C 0.11 1.92 6.44 -3.71 -0.02 1.89 16 26 H 0.08 1.17 6.58 -51.93 -0.34 0.83 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.72 7.91 -51.93 -0.41 0.31 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.08 0.91 5.42 -51.93 -0.28 0.63 16 37 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 39 H 0.03 0.62 7.20 -51.93 -0.37 0.25 16 40 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 41 H 0.06 1.42 8.14 -51.93 -0.42 0.99 16 42 H 0.06 1.28 3.24 -51.93 -0.17 1.11 16 43 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.08 1.51 7.00 -51.93 -0.36 1.15 16 LS Contribution 328.36 15.07 4.95 4.95 Total: -1.00 -30.96 328.36 -7.41 -38.37 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -7.34 Total: 0.84 kcal Atomic # 6 Polarization: -9.04 SS G_CDS: -0.84 Total: -9.89 kcal Atomic # 7 Polarization: -36.81 SS G_CDS: 0.26 Total: -36.55 kcal Atomic # 8 Polarization: -14.71 SS G_CDS: -0.29 Total: -15.00 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.14 Total: 17.28 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.96 -7.41 -38.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335206492.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.089 kcal (2) G-P(sol) polarization free energy of solvation -30.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds