Wall clock time and date at job start Tue Mar 31 2020 05:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.89605 * 2 1 4 4 O 1.43235 * 109.83049 * 239.06155 * 2 1 3 5 5 C 1.43645 * 109.97529 * 242.19979 * 4 2 1 6 6 C 1.54944 * 105.22260 * 335.52671 * 5 4 2 7 7 C 1.54383 * 109.82711 * 120.93407 * 2 1 3 8 8 H 1.09000 * 110.84920 * 22.67681 * 7 2 1 9 9 C 1.50700 * 110.84757 * 259.26299 * 7 2 1 10 10 O 1.21289 * 119.99908 * 359.97438 * 9 7 2 11 11 N 1.34772 * 120.00215 * 179.97438 * 9 7 2 12 12 C 1.46927 * 120.63165 * 359.72184 * 11 9 7 13 13 C 1.52762 * 109.00799 * 233.58622 * 12 11 9 14 14 C 1.53049 * 109.38039 * 305.58547 * 13 12 11 15 15 C 1.53000 * 109.45677 * 181.26200 * 14 13 12 16 16 C 1.50700 * 109.47067 * 64.93152 * 15 14 13 17 17 H 1.07995 * 120.00123 * 359.97438 * 16 15 14 18 18 C 1.37884 * 119.99712 * 179.97438 * 16 15 14 19 19 N 1.31513 * 119.99857 * 180.02562 * 18 16 15 20 20 Si 1.86797 * 120.00081 * 359.97438 * 18 16 15 21 21 H 1.48503 * 109.46965 * 90.00094 * 20 18 16 22 22 H 1.48505 * 109.47232 * 210.00120 * 20 18 16 23 23 H 1.48501 * 109.47312 * 330.00276 * 20 18 16 24 24 C 1.53033 * 109.53778 * 61.24099 * 14 13 12 25 25 C 1.46931 * 120.63246 * 179.97438 * 11 9 7 26 26 H 1.09006 * 109.47327 * 179.47905 * 1 2 3 27 27 H 1.08998 * 109.47323 * 299.48341 * 1 2 3 28 28 H 1.09003 * 109.47031 * 59.48248 * 1 2 3 29 29 H 1.09002 * 110.30923 * 94.49115 * 5 4 2 30 30 H 1.09000 * 110.31166 * 216.56243 * 5 4 2 31 31 H 1.08997 * 111.13230 * 154.41072 * 6 5 4 32 32 H 1.09003 * 111.12649 * 278.57419 * 6 5 4 33 33 H 1.08995 * 109.58474 * 353.41538 * 12 11 9 34 34 H 1.08992 * 109.58979 * 113.84404 * 12 11 9 35 35 H 1.09000 * 109.56671 * 185.55217 * 13 12 11 36 36 H 1.09006 * 109.36413 * 65.49393 * 13 12 11 37 37 H 1.08995 * 109.45741 * 301.21916 * 14 13 12 38 38 H 1.08996 * 109.46761 * 184.92959 * 15 14 13 39 39 H 1.08998 * 109.47313 * 304.93095 * 15 14 13 40 40 H 0.96999 * 120.00405 * 179.97438 * 19 18 16 41 41 H 1.08998 * 109.49689 * 178.68226 * 24 14 13 42 42 H 1.09002 * 109.49776 * 58.58474 * 24 14 13 43 43 H 1.08995 * 109.58503 * 246.15686 * 25 11 9 44 44 H 1.09006 * 109.58683 * 6.58449 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9009 1.0249 0.0000 4 8 2.0159 -0.6927 -1.1557 5 6 2.7747 -1.8445 -0.7545 6 6 3.2751 -1.5238 0.6764 7 6 2.0536 -0.7466 1.2457 8 1 1.3011 -1.4349 1.6303 9 6 2.4824 0.2267 2.3134 10 8 2.3879 1.4202 2.1194 11 7 2.9708 -0.2291 3.4839 12 6 3.0856 -1.6720 3.7362 13 6 2.3722 -2.0066 5.0448 14 6 2.9285 -1.1259 6.1662 15 6 2.2373 -1.4816 7.4840 16 6 2.5912 -2.8942 7.8716 17 1 3.2434 -3.4799 7.2408 18 6 2.0821 -3.4389 9.0315 19 7 2.3914 -4.6715 9.3700 20 14 0.9545 -2.4256 10.1228 21 1 -0.4552 -2.6294 9.7026 22 1 1.1169 -2.8537 11.5355 23 1 1.3053 -0.9880 9.9978 24 6 2.6709 0.3461 5.8363 25 6 3.3934 0.7075 4.5343 26 1 -0.3634 -1.0277 -0.0093 27 1 -0.3634 0.5058 0.8946 28 1 -0.3633 0.5219 -0.8853 29 1 2.1400 -2.7307 -0.7436 30 1 3.6200 -1.9936 -1.4263 31 1 3.4601 -2.4371 1.2420 32 1 4.1641 -0.8937 0.6497 33 1 2.6230 -2.2238 2.9180 34 1 4.1374 -1.9464 3.8161 35 1 2.5351 -3.0558 5.2915 36 1 1.3041 -1.8205 4.9320 37 1 4.0010 -1.2944 6.2619 38 1 2.5688 -0.7968 8.2644 39 1 1.1574 -1.3980 7.3620 40 1 2.0336 -5.0547 10.1861 41 1 3.0464 0.9714 6.6463 42 1 1.6000 0.5100 5.7160 43 1 4.4708 0.6306 4.6804 44 1 3.1337 1.7252 4.2425 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335384103.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:51 Heat of formation + Delta-G solvation = -100.345710 kcal Electronic energy + Delta-G solvation = -23053.425347 eV Core-core repulsion = 19776.832731 eV Total energy + Delta-G solvation = -3276.592615 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.82193 -39.03543 -37.39102 -34.23839 -32.92960 -32.10827 -31.61565 -30.73397 -28.70446 -26.80705 -24.74907 -23.11432 -22.73423 -21.80446 -21.03508 -19.74117 -18.87059 -17.68485 -16.78770 -16.46547 -16.09357 -15.47596 -15.02448 -14.51471 -14.40694 -14.05909 -13.91094 -13.69955 -13.46528 -13.21580 -12.91494 -12.79257 -12.47405 -12.31120 -12.16859 -12.05092 -11.64312 -11.49741 -11.22696 -11.15698 -11.06931 -10.92468 -10.71049 -10.40452 -9.93673 -9.92406 -9.72177 -9.60512 -9.53502 -9.12284 -8.58781 -8.51396 -6.09733 -4.07453 2.54236 2.96325 3.26486 3.34835 3.38065 3.55906 4.14300 4.36798 4.40659 4.49622 4.76401 4.87886 4.95545 5.03331 5.21369 5.23118 5.25187 5.32793 5.35506 5.37143 5.42382 5.45024 5.54883 5.56262 5.69019 5.70334 5.84180 5.93156 5.96566 6.05223 6.20170 6.22241 6.34941 6.52437 6.71760 6.78129 6.80990 6.88425 7.20704 7.35835 7.43201 7.74284 8.12244 8.47486 8.94236 9.53487 11.03406 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.026998 B = 0.003827 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.869774 B = 7314.203454 C = 7600.303351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.090 3.910 3 H 0.100 0.900 4 O -0.379 6.379 5 C 0.052 3.948 6 C -0.147 4.147 7 C -0.143 4.143 8 H 0.112 0.888 9 C 0.526 3.474 10 O -0.547 6.547 11 N -0.601 5.601 12 C 0.101 3.899 13 C -0.122 4.122 14 C -0.072 4.072 15 C -0.009 4.009 16 C -0.517 4.517 17 H 0.073 0.927 18 C 0.067 3.933 19 N -0.904 5.904 20 Si 0.877 3.123 21 H -0.278 1.278 22 H -0.288 1.288 23 H -0.266 1.266 24 C -0.132 4.132 25 C 0.112 3.888 26 H 0.058 0.942 27 H 0.068 0.932 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.087 0.913 31 H 0.095 0.905 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.091 0.909 36 H 0.058 0.942 37 H 0.065 0.935 38 H 0.016 0.984 39 H 0.010 0.990 40 H 0.263 0.737 41 H 0.071 0.929 42 H 0.060 0.940 43 H 0.066 0.934 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.474 6.414 -17.003 18.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.032 3.968 3 H 0.118 0.882 4 O -0.298 6.298 5 C -0.024 4.024 6 C -0.185 4.185 7 C -0.164 4.164 8 H 0.130 0.870 9 C 0.314 3.686 10 O -0.426 6.426 11 N -0.334 5.334 12 C -0.022 4.022 13 C -0.160 4.160 14 C -0.091 4.091 15 C -0.047 4.047 16 C -0.555 4.555 17 H 0.091 0.909 18 C -0.134 4.134 19 N -0.543 5.543 20 Si 0.705 3.295 21 H -0.204 1.204 22 H -0.214 1.214 23 H -0.191 1.191 24 C -0.170 4.170 25 C -0.010 4.010 26 H 0.077 0.923 27 H 0.087 0.913 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.105 0.895 31 H 0.113 0.887 32 H 0.102 0.898 33 H 0.098 0.902 34 H 0.088 0.912 35 H 0.110 0.890 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.034 0.966 39 H 0.029 0.971 40 H 0.072 0.928 41 H 0.090 0.910 42 H 0.079 0.921 43 H 0.084 0.916 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.363 6.972 -17.161 18.527 hybrid contribution -0.620 0.113 1.141 1.304 sum -0.257 7.085 -16.020 17.518 Atomic orbital electron populations 1.22118 0.94514 1.02397 1.02711 1.22650 0.94505 0.97140 0.82461 0.88193 1.88438 1.70952 1.40383 1.30071 1.23352 0.95238 0.89204 0.94626 1.23405 0.97373 1.01087 0.96595 1.22954 0.99684 0.98083 0.95695 0.86994 1.20098 0.77009 0.88924 0.82588 1.90666 1.55658 1.16594 1.79642 1.48136 1.62472 1.07959 1.14793 1.21975 1.01431 0.79420 0.99345 1.21860 0.99349 1.02240 0.92549 1.21007 1.00368 0.91517 0.96182 1.19617 0.95288 0.97522 0.92237 1.21122 1.30080 0.96746 1.07562 0.90864 1.25020 0.96125 0.94734 0.97555 1.69905 1.45298 1.14122 1.24937 0.86818 0.81434 0.81291 0.79961 1.20388 1.21444 1.19074 1.22071 1.00538 0.98643 0.95788 1.21682 0.98629 0.93641 0.87067 0.92278 0.91292 0.91687 0.91845 0.89452 0.88667 0.89816 0.90199 0.91190 0.89025 0.92344 0.91671 0.96575 0.97135 0.92758 0.91045 0.92074 0.91587 0.89554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.65 9.44 37.16 0.35 -1.30 16 2 C 0.09 1.05 3.61 -26.01 -0.09 0.95 16 3 H 0.10 1.35 6.79 -51.93 -0.35 1.00 16 4 O -0.38 -4.47 11.02 -35.23 -0.39 -4.85 16 5 C 0.05 0.46 7.77 38.18 0.30 0.75 16 6 C -0.15 -1.30 5.83 -24.34 -0.14 -1.44 16 7 C -0.14 -1.55 1.88 -89.68 -0.17 -1.72 16 8 H 0.11 1.10 7.24 -51.93 -0.38 0.73 16 9 C 0.53 7.24 7.08 -10.99 -0.08 7.17 16 10 O -0.55 -9.17 14.83 5.55 0.08 -9.09 16 11 N -0.60 -8.04 2.98 -173.00 -0.52 -8.55 16 12 C 0.10 1.24 5.68 -3.93 -0.02 1.21 16 13 C -0.12 -1.93 5.17 -26.83 -0.14 -2.07 16 14 C -0.07 -1.28 2.10 -90.58 -0.19 -1.47 16 15 C -0.01 -0.21 3.52 -27.88 -0.10 -0.31 16 16 C -0.52 -13.77 8.94 -34.44 -0.31 -14.08 16 17 H 0.07 2.07 7.30 -52.49 -0.38 1.68 16 18 C 0.07 1.87 5.47 -17.82 -0.10 1.77 16 19 N -0.90 -26.94 13.96 55.43 0.77 -26.17 16 20 Si 0.88 21.20 27.47 -169.99 -4.67 16.53 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.27 -6.20 6.54 56.52 0.37 -5.83 16 24 C -0.13 -2.01 5.36 -26.59 -0.14 -2.16 16 25 C 0.11 1.54 6.44 -3.69 -0.02 1.51 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.09 0.69 6.72 -51.93 -0.35 0.34 16 32 H 0.08 0.79 8.04 -51.93 -0.42 0.37 16 33 H 0.08 0.80 4.60 -51.93 -0.24 0.56 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.09 1.61 6.91 -51.93 -0.36 1.25 16 36 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 37 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.02 0.37 7.20 -51.93 -0.37 -0.01 16 39 H 0.01 0.24 7.57 -51.93 -0.39 -0.16 16 40 H 0.26 7.38 8.31 -40.82 -0.34 7.05 16 41 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.09 1.23 7.01 -51.93 -0.36 0.87 16 LS Contribution 336.53 15.07 5.07 5.07 Total: -1.00 -31.08 336.53 -7.92 -39.01 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -7.42 Total: -0.78 kcal Atomic # 6 Polarization: -10.31 SS G_CDS: -0.86 Total: -11.16 kcal Atomic # 7 Polarization: -34.98 SS G_CDS: 0.26 Total: -34.72 kcal Atomic # 8 Polarization: -13.64 SS G_CDS: -0.31 Total: -13.94 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.67 Total: 16.53 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.08 -7.92 -39.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335384103.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.336 kcal (2) G-P(sol) polarization free energy of solvation -31.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds