Wall clock time and date at job start Tue Mar 31 2020 05:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.89605 * 2 1 4 4 O 1.43235 * 109.83049 * 239.06155 * 2 1 3 5 5 C 1.43645 * 109.97529 * 242.19979 * 4 2 1 6 6 C 1.54944 * 105.22260 * 335.52671 * 5 4 2 7 7 C 1.54383 * 109.82711 * 120.93407 * 2 1 3 8 8 H 1.09000 * 110.84920 * 22.67681 * 7 2 1 9 9 C 1.50700 * 110.84757 * 259.26299 * 7 2 1 10 10 O 1.21289 * 119.99908 * 359.97438 * 9 7 2 11 11 N 1.34772 * 120.00215 * 179.97438 * 9 7 2 12 12 C 1.46927 * 120.63165 * 359.72184 * 11 9 7 13 13 C 1.52762 * 109.00799 * 233.58622 * 12 11 9 14 14 C 1.53049 * 109.38039 * 305.58547 * 13 12 11 15 15 C 1.53000 * 109.45677 * 181.26200 * 14 13 12 16 16 C 1.50700 * 109.47067 * 64.93152 * 15 14 13 17 17 H 1.07995 * 120.00123 * 359.97438 * 16 15 14 18 18 C 1.37884 * 119.99712 * 179.97438 * 16 15 14 19 19 N 1.31513 * 119.99857 * 180.02562 * 18 16 15 20 20 Si 1.86797 * 120.00081 * 359.97438 * 18 16 15 21 21 H 1.48503 * 109.46965 * 90.00094 * 20 18 16 22 22 H 1.48505 * 109.47232 * 210.00120 * 20 18 16 23 23 H 1.48501 * 109.47312 * 330.00276 * 20 18 16 24 24 C 1.53033 * 109.53778 * 61.24099 * 14 13 12 25 25 C 1.46931 * 120.63246 * 179.97438 * 11 9 7 26 26 H 1.09006 * 109.47327 * 179.47905 * 1 2 3 27 27 H 1.08998 * 109.47323 * 299.48341 * 1 2 3 28 28 H 1.09003 * 109.47031 * 59.48248 * 1 2 3 29 29 H 1.09002 * 110.30923 * 94.49115 * 5 4 2 30 30 H 1.09000 * 110.31166 * 216.56243 * 5 4 2 31 31 H 1.08997 * 111.13230 * 154.41072 * 6 5 4 32 32 H 1.09003 * 111.12649 * 278.57419 * 6 5 4 33 33 H 1.08995 * 109.58474 * 353.41538 * 12 11 9 34 34 H 1.08992 * 109.58979 * 113.84404 * 12 11 9 35 35 H 1.09000 * 109.56671 * 185.55217 * 13 12 11 36 36 H 1.09006 * 109.36413 * 65.49393 * 13 12 11 37 37 H 1.08995 * 109.45741 * 301.21916 * 14 13 12 38 38 H 1.08996 * 109.46761 * 184.92959 * 15 14 13 39 39 H 1.08998 * 109.47313 * 304.93095 * 15 14 13 40 40 H 0.96999 * 120.00405 * 179.97438 * 19 18 16 41 41 H 1.08998 * 109.49689 * 178.68226 * 24 14 13 42 42 H 1.09002 * 109.49776 * 58.58474 * 24 14 13 43 43 H 1.08995 * 109.58503 * 246.15686 * 25 11 9 44 44 H 1.09006 * 109.58683 * 6.58449 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9009 1.0249 0.0000 4 8 2.0159 -0.6927 -1.1557 5 6 2.7747 -1.8445 -0.7545 6 6 3.2751 -1.5238 0.6764 7 6 2.0536 -0.7466 1.2457 8 1 1.3011 -1.4349 1.6303 9 6 2.4824 0.2267 2.3134 10 8 2.3879 1.4202 2.1194 11 7 2.9708 -0.2291 3.4839 12 6 3.0856 -1.6720 3.7362 13 6 2.3722 -2.0066 5.0448 14 6 2.9285 -1.1259 6.1662 15 6 2.2373 -1.4816 7.4840 16 6 2.5912 -2.8942 7.8716 17 1 3.2434 -3.4799 7.2408 18 6 2.0821 -3.4389 9.0315 19 7 2.3914 -4.6715 9.3700 20 14 0.9545 -2.4256 10.1228 21 1 -0.4552 -2.6294 9.7026 22 1 1.1169 -2.8537 11.5355 23 1 1.3053 -0.9880 9.9978 24 6 2.6709 0.3461 5.8363 25 6 3.3934 0.7075 4.5343 26 1 -0.3634 -1.0277 -0.0093 27 1 -0.3634 0.5058 0.8946 28 1 -0.3633 0.5219 -0.8853 29 1 2.1400 -2.7307 -0.7436 30 1 3.6200 -1.9936 -1.4263 31 1 3.4601 -2.4371 1.2420 32 1 4.1641 -0.8937 0.6497 33 1 2.6230 -2.2238 2.9180 34 1 4.1374 -1.9464 3.8161 35 1 2.5351 -3.0558 5.2915 36 1 1.3041 -1.8205 4.9320 37 1 4.0010 -1.2944 6.2619 38 1 2.5688 -0.7968 8.2644 39 1 1.1574 -1.3980 7.3620 40 1 2.0336 -5.0547 10.1861 41 1 3.0464 0.9714 6.6463 42 1 1.6000 0.5100 5.7160 43 1 4.4708 0.6306 4.6804 44 1 3.1337 1.7252 4.2425 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335384103.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:51 Heat of formation + Delta-G solvation = -119.460766 kcal Electronic energy + Delta-G solvation = -23054.254238 eV Core-core repulsion = 19776.832731 eV Total energy + Delta-G solvation = -3277.421506 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.81125 -40.01268 -38.61676 -35.74400 -34.29276 -33.53540 -32.45381 -31.82719 -30.33263 -27.74019 -26.16183 -24.27618 -23.87671 -22.76864 -22.27406 -21.03955 -19.97145 -18.89106 -18.59293 -17.35776 -17.13900 -16.44752 -16.38767 -15.95799 -15.37769 -15.28754 -15.03303 -14.87879 -14.83273 -14.43154 -14.14702 -14.07003 -13.63852 -13.55756 -13.29775 -13.05385 -12.94892 -12.75736 -12.41751 -12.39073 -12.15701 -11.97028 -11.90580 -11.85922 -11.72286 -11.39308 -11.17649 -10.93467 -10.79416 -10.71310 -10.47677 -9.66059 -8.24990 -6.26124 1.35367 1.38102 1.48205 1.49524 1.92739 2.37851 2.77633 3.11037 3.32801 3.47192 3.69280 3.84584 3.98389 4.04007 4.10648 4.13634 4.21010 4.27063 4.38152 4.40010 4.50921 4.62887 4.64434 4.67882 4.77635 4.83193 4.86551 4.91321 4.93228 5.01431 5.09190 5.14923 5.16591 5.22577 5.23604 5.36393 5.41847 5.59988 5.72723 5.74571 6.03278 6.34245 6.37428 6.81462 7.06014 7.37991 8.91027 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.026998 B = 0.003827 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.869774 B = 7314.203454 C = 7600.303351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.090 3.910 3 H 0.074 0.926 4 O -0.397 6.397 5 C 0.047 3.953 6 C -0.141 4.141 7 C -0.140 4.140 8 H 0.128 0.872 9 C 0.525 3.475 10 O -0.581 6.581 11 N -0.601 5.601 12 C 0.109 3.891 13 C -0.118 4.118 14 C -0.070 4.070 15 C -0.008 4.008 16 C -0.514 4.514 17 H 0.045 0.955 18 C 0.006 3.994 19 N -0.951 5.951 20 Si 0.939 3.061 21 H -0.271 1.271 22 H -0.288 1.288 23 H -0.251 1.251 24 C -0.123 4.123 25 C 0.115 3.885 26 H 0.071 0.929 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.080 0.920 30 H 0.102 0.898 31 H 0.118 0.882 32 H 0.076 0.924 33 H 0.109 0.891 34 H 0.083 0.917 35 H 0.069 0.931 36 H 0.054 0.946 37 H 0.060 0.940 38 H 0.014 0.986 39 H 0.010 0.990 40 H 0.263 0.737 41 H 0.079 0.921 42 H 0.054 0.946 43 H 0.080 0.920 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.193 6.797 -17.916 19.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.032 3.968 3 H 0.092 0.908 4 O -0.318 6.318 5 C -0.028 4.028 6 C -0.179 4.179 7 C -0.161 4.161 8 H 0.146 0.854 9 C 0.314 3.686 10 O -0.462 6.462 11 N -0.333 5.333 12 C -0.013 4.013 13 C -0.156 4.156 14 C -0.089 4.089 15 C -0.046 4.046 16 C -0.552 4.552 17 H 0.063 0.937 18 C -0.190 4.190 19 N -0.592 5.592 20 Si 0.763 3.237 21 H -0.196 1.196 22 H -0.214 1.214 23 H -0.175 1.175 24 C -0.161 4.161 25 C -0.007 4.007 26 H 0.090 0.910 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.098 0.902 30 H 0.120 0.880 31 H 0.136 0.864 32 H 0.095 0.905 33 H 0.127 0.873 34 H 0.101 0.899 35 H 0.088 0.912 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.032 0.968 39 H 0.029 0.971 40 H 0.072 0.928 41 H 0.097 0.903 42 H 0.073 0.927 43 H 0.098 0.902 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.089 7.357 -18.086 19.525 hybrid contribution -0.476 -0.038 1.386 1.466 sum -0.387 7.319 -16.700 18.238 Atomic orbital electron populations 1.22086 0.93680 1.03135 1.02538 1.22542 0.95176 0.96100 0.82971 0.90768 1.88419 1.71463 1.41513 1.30366 1.23579 0.95816 0.88705 0.94739 1.23435 0.96075 1.01499 0.96845 1.22973 1.00995 0.97689 0.94433 0.85382 1.20567 0.76184 0.88912 0.82967 1.90655 1.56975 1.18277 1.80286 1.48192 1.62176 1.08256 1.14672 1.21970 1.02038 0.79049 0.98214 1.21748 0.99509 1.00494 0.93882 1.20925 0.99586 0.93692 0.94651 1.19588 0.95638 0.94689 0.94637 1.21455 1.28575 0.98476 1.06699 0.93679 1.25880 0.98017 0.95754 0.99365 1.70046 1.47283 1.16066 1.25803 0.85830 0.79563 0.80405 0.77863 1.19642 1.21432 1.17456 1.21948 1.00427 0.96721 0.96981 1.21622 0.99226 0.93582 0.86310 0.91018 0.91808 0.91567 0.90160 0.88010 0.86392 0.90483 0.87331 0.89874 0.91204 0.92733 0.92115 0.96808 0.97130 0.92778 0.90275 0.92671 0.90198 0.89988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.03 9.44 71.98 0.68 -2.35 16 2 C 0.09 1.99 3.61 31.06 0.11 2.10 16 3 H 0.07 2.02 6.79 -2.39 -0.02 2.00 16 4 O -0.40 -8.70 11.02 -148.98 -1.64 -10.34 16 5 C 0.05 0.69 7.77 72.65 0.56 1.25 16 6 C -0.14 -2.07 5.83 32.14 0.19 -1.88 16 7 C -0.14 -2.71 1.88 -10.19 -0.02 -2.73 16 8 H 0.13 2.10 7.24 -2.39 -0.02 2.08 16 9 C 0.52 13.56 7.08 87.66 0.62 14.18 16 10 O -0.58 -19.12 14.83 -3.06 -0.05 -19.16 16 11 N -0.60 -14.76 2.98 -819.65 -2.44 -17.20 16 12 C 0.11 2.39 5.68 86.22 0.49 2.88 16 13 C -0.12 -3.58 5.17 30.53 0.16 -3.43 16 14 C -0.07 -2.39 2.10 -10.77 -0.02 -2.42 16 15 C -0.01 -0.36 3.52 29.85 0.10 -0.25 16 16 C -0.51 -27.59 8.94 25.60 0.23 -27.37 16 17 H 0.04 2.61 7.30 -2.91 -0.02 2.59 16 18 C 0.01 0.36 5.47 84.66 0.46 0.82 16 19 N -0.95 -57.72 13.96 21.45 0.30 -57.42 16 20 Si 0.94 43.37 27.47 68.60 1.88 45.26 16 21 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 22 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16 23 H -0.25 -10.86 6.54 99.48 0.65 -10.21 16 24 C -0.12 -3.51 5.36 30.68 0.16 -3.35 16 25 C 0.11 2.94 6.44 86.37 0.56 3.50 16 26 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 27 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.12 1.19 6.72 -2.39 -0.02 1.18 16 32 H 0.08 1.26 8.04 -2.39 -0.02 1.24 16 33 H 0.11 1.78 4.60 -2.39 -0.01 1.77 16 34 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.07 2.44 6.91 -2.39 -0.02 2.42 16 36 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 37 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 38 H 0.01 0.60 7.20 -2.39 -0.02 0.59 16 39 H 0.01 0.46 7.57 -2.39 -0.02 0.44 16 40 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 41 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 42 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 43 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.08 2.22 7.01 -2.38 -0.02 2.21 16 Total: -1.00 -67.81 336.53 3.25 -64.56 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: 0.91 Total: 13.35 kcal Atomic # 6 Polarization: -23.33 SS G_CDS: 4.29 Total: -19.04 kcal Atomic # 7 Polarization: -72.48 SS G_CDS: -2.14 Total: -74.62 kcal Atomic # 8 Polarization: -27.82 SS G_CDS: -1.69 Total: -29.50 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 1.88 Total: 45.26 kcal Total: -67.81 3.25 -64.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335384103.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.902 kcal (2) G-P(sol) polarization free energy of solvation -67.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds