Wall clock time and date at job start Tue Mar 31 2020 05:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.99065 * 2 1 4 4 O 1.43745 * 109.88388 * 121.08907 * 2 1 3 5 5 C 1.44378 * 106.97348 * 92.90521 * 4 2 1 6 6 C 1.54991 * 103.49061 * 40.06796 * 5 4 2 7 7 C 1.54106 * 109.87811 * 238.92058 * 2 1 3 8 8 H 1.09000 * 110.48690 * 1.41215 * 7 2 1 9 9 C 1.50700 * 110.48670 * 123.92831 * 7 2 1 10 10 O 1.21280 * 120.00363 * 359.97438 * 9 7 2 11 11 N 1.34778 * 119.99800 * 180.02562 * 9 7 2 12 12 C 1.46930 * 120.63124 * 359.71474 * 11 9 7 13 13 C 1.52752 * 109.01009 * 233.58773 * 12 11 9 14 14 C 1.53038 * 109.38423 * 305.58797 * 13 12 11 15 15 C 1.53003 * 109.46161 * 181.25977 * 14 13 12 16 16 C 1.50692 * 109.47039 * 64.93349 * 15 14 13 17 17 H 1.08007 * 120.00203 * 359.97438 * 16 15 14 18 18 C 1.37874 * 120.00216 * 179.97438 * 16 15 14 19 19 N 1.31518 * 119.99903 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 120.00226 * 179.97438 * 18 16 15 21 21 H 1.48491 * 109.47091 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47208 * 120.00250 * 20 18 16 23 23 H 1.48505 * 109.46715 * 239.99831 * 20 18 16 24 24 C 1.53043 * 109.53757 * 61.23878 * 14 13 12 25 25 C 1.46923 * 120.63091 * 179.97438 * 11 9 7 26 26 H 1.08999 * 109.46755 * 181.08241 * 1 2 3 27 27 H 1.09006 * 109.46851 * 301.07816 * 1 2 3 28 28 H 1.08997 * 109.47182 * 61.07983 * 1 2 3 29 29 H 1.08993 * 110.62203 * 281.56143 * 5 4 2 30 30 H 1.09004 * 110.74991 * 158.62652 * 5 4 2 31 31 H 1.09005 * 110.90880 * 204.77350 * 6 5 4 32 32 H 1.09001 * 110.94109 * 81.17886 * 6 5 4 33 33 H 1.09002 * 109.58171 * 353.42413 * 12 11 9 34 34 H 1.08998 * 109.58626 * 113.84104 * 12 11 9 35 35 H 1.09001 * 109.56733 * 185.55100 * 13 12 11 36 36 H 1.09003 * 109.36107 * 65.49727 * 13 12 11 37 37 H 1.08998 * 109.46256 * 301.22358 * 14 13 12 38 38 H 1.09002 * 109.47076 * 184.93174 * 15 14 13 39 39 H 1.08994 * 109.47186 * 304.92779 * 15 14 13 40 40 H 0.97002 * 120.00004 * 179.97438 * 19 18 16 41 41 H 1.09003 * 109.49581 * 178.68237 * 24 14 13 42 42 H 1.09001 * 109.49333 * 58.58817 * 24 14 13 43 43 H 1.09005 * 109.58593 * 246.15405 * 25 11 9 44 44 H 1.08997 * 109.58664 * 6.43359 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9026 1.0244 0.0000 4 8 2.0189 -0.6980 1.1576 5 6 2.2281 -2.0714 0.7645 6 6 2.8324 -1.9524 -0.6577 7 6 2.0540 -0.7481 -1.2412 8 1 1.2238 -1.0910 -1.8587 9 6 2.9743 0.1373 -2.0412 10 8 3.2027 1.2686 -1.6687 11 7 3.5428 -0.3278 -3.1713 12 6 3.2798 -1.6977 -3.6327 13 6 4.6114 -2.4137 -3.8503 14 6 5.4835 -1.5874 -4.7983 15 6 6.8053 -2.3183 -5.0424 16 6 6.5378 -3.6110 -5.7691 17 1 5.5261 -3.8842 -6.0305 18 6 7.5845 -4.4450 -6.1005 19 7 8.8165 -4.1120 -5.7827 20 14 7.2528 -6.0478 -7.0008 21 1 5.7941 -6.1885 -7.2398 22 1 7.9699 -6.0427 -8.3012 23 1 7.7310 -7.1866 -6.1764 24 6 5.7652 -0.2193 -4.1729 25 6 4.4417 0.5237 -3.9623 26 1 -0.3633 -1.0275 0.0194 27 1 -0.3633 0.5305 0.8802 28 1 -0.3633 0.4970 -0.8995 29 1 1.2814 -2.6108 0.7354 30 1 2.9285 -2.5638 1.4391 31 1 2.6432 -2.8557 -1.2377 32 1 3.9003 -1.7392 -0.6107 33 1 2.6982 -2.2311 -2.8807 34 1 2.7267 -1.6673 -4.5714 35 1 4.4306 -3.3964 -4.2858 36 1 5.1211 -2.5276 -2.8935 37 1 4.9627 -1.4529 -5.7464 38 1 7.4612 -1.6910 -5.6461 39 1 7.2846 -2.5310 -4.0869 40 1 9.5529 -4.6990 -6.0155 41 1 6.4056 0.3599 -4.8382 42 1 6.2640 -0.3539 -3.2131 43 1 3.9852 0.7386 -4.9285 44 1 4.6246 1.4565 -3.4290 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335384104.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:54 Heat of formation + Delta-G solvation = -101.934973 kcal Electronic energy + Delta-G solvation = -23145.855016 eV Core-core repulsion = 19869.193486 eV Total energy + Delta-G solvation = -3276.661531 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.83056 -38.95520 -37.29112 -34.15527 -32.91137 -32.03468 -31.42951 -30.58730 -28.24624 -26.95164 -24.68576 -22.98908 -22.53832 -22.00653 -21.13740 -19.74961 -18.61502 -17.59329 -16.50241 -16.34141 -15.97753 -15.60251 -14.98349 -14.57529 -14.52418 -13.89776 -13.76950 -13.55353 -13.27501 -13.10186 -13.01190 -12.76588 -12.39476 -12.16156 -12.09993 -11.77682 -11.49305 -11.23601 -11.17472 -11.04384 -11.00974 -10.78378 -10.75002 -10.47989 -10.15688 -9.88277 -9.74341 -9.58340 -9.31341 -9.00826 -8.42680 -8.39209 -6.04308 -4.06679 2.61846 3.03822 3.26392 3.34678 3.36881 3.69969 4.29244 4.38585 4.40997 4.56207 4.86233 4.91074 4.99568 5.11479 5.19163 5.30475 5.31856 5.32929 5.38095 5.43723 5.47676 5.52681 5.58571 5.64107 5.76197 5.81315 5.88998 5.94325 6.00500 6.06061 6.32078 6.33416 6.46522 6.62243 6.74322 6.90279 6.93208 7.05407 7.50047 7.62406 7.76478 7.95208 8.19456 8.37183 9.00077 9.57481 11.06924 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.025267 B = 0.003958 C = 0.003665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.894644 B = 7072.397206 C = 7638.470164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.080 3.920 3 H 0.117 0.883 4 O -0.369 6.369 5 C 0.046 3.954 6 C -0.146 4.146 7 C -0.140 4.140 8 H 0.108 0.892 9 C 0.523 3.477 10 O -0.547 6.547 11 N -0.601 5.601 12 C 0.096 3.904 13 C -0.119 4.119 14 C -0.081 4.081 15 C 0.027 3.973 16 C -0.517 4.517 17 H 0.056 0.944 18 C 0.056 3.944 19 N -0.894 5.894 20 Si 0.888 3.112 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.285 1.285 24 C -0.129 4.129 25 C 0.111 3.889 26 H 0.057 0.943 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.066 0.934 35 H 0.085 0.915 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.016 0.984 39 H 0.015 0.985 40 H 0.260 0.740 41 H 0.071 0.929 42 H 0.060 0.940 43 H 0.064 0.936 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.526 4.702 8.591 18.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.022 3.978 3 H 0.134 0.866 4 O -0.288 6.288 5 C -0.031 4.031 6 C -0.184 4.184 7 C -0.162 4.162 8 H 0.126 0.874 9 C 0.311 3.689 10 O -0.426 6.426 11 N -0.333 5.333 12 C -0.026 4.026 13 C -0.157 4.157 14 C -0.099 4.099 15 C -0.010 4.010 16 C -0.555 4.555 17 H 0.074 0.926 18 C -0.145 4.145 19 N -0.534 5.534 20 Si 0.717 3.283 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.211 1.211 24 C -0.167 4.167 25 C -0.011 4.011 26 H 0.076 0.924 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.114 0.886 31 H 0.111 0.889 32 H 0.104 0.896 33 H 0.099 0.901 34 H 0.085 0.915 35 H 0.104 0.896 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.034 0.966 39 H 0.034 0.966 40 H 0.069 0.931 41 H 0.089 0.911 42 H 0.079 0.921 43 H 0.082 0.918 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -15.190 5.334 8.965 18.427 hybrid contribution -0.033 -1.228 -0.934 1.543 sum -15.224 4.106 8.031 17.695 Atomic orbital electron populations 1.22270 0.95318 1.02313 1.02670 1.22789 0.93666 0.98354 0.82970 0.86583 1.88935 1.86093 1.20605 1.33155 1.23558 0.99823 0.84688 0.94987 1.23262 1.01329 0.97124 0.96661 1.22727 0.98854 0.96619 0.97971 0.87387 1.20229 0.80782 0.87397 0.80526 1.90647 1.62913 1.19888 1.69104 1.48112 1.46378 1.14773 1.24058 1.22022 0.99286 0.81412 0.99859 1.21824 0.93642 0.99800 1.00441 1.21190 0.99370 0.92743 0.96612 1.19127 0.90455 0.94565 0.96835 1.21260 0.93037 1.04479 1.36703 0.92565 1.25026 0.95199 0.98172 0.96061 1.69975 0.98700 1.37439 1.47272 0.86595 0.78301 0.83849 0.79595 1.19770 1.21074 1.21084 1.22033 0.95480 0.97723 1.01505 1.21699 0.90376 0.94137 0.94857 0.92391 0.91596 0.91533 0.92020 0.88634 0.88860 0.89601 0.90073 0.91528 0.89610 0.92264 0.92343 0.96584 0.96634 0.93069 0.91082 0.92086 0.91775 0.89652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.51 9.30 37.16 0.35 -1.17 16 2 C 0.08 0.94 3.70 -26.15 -0.10 0.84 16 3 H 0.12 1.61 6.44 -51.93 -0.33 1.28 16 4 O -0.37 -4.70 11.19 -35.23 -0.39 -5.09 16 5 C 0.05 0.45 7.66 38.21 0.29 0.74 16 6 C -0.15 -1.49 5.49 -24.73 -0.14 -1.62 16 7 C -0.14 -1.56 2.11 -90.24 -0.19 -1.75 16 8 H 0.11 0.97 7.41 -51.93 -0.38 0.58 16 9 C 0.52 7.55 6.95 -10.98 -0.08 7.47 16 10 O -0.55 -9.63 14.67 5.56 0.08 -9.55 16 11 N -0.60 -8.45 2.98 -173.01 -0.52 -8.96 16 12 C 0.10 1.22 5.97 -3.93 -0.02 1.20 16 13 C -0.12 -1.93 5.17 -26.84 -0.14 -2.06 16 14 C -0.08 -1.50 2.10 -90.58 -0.19 -1.69 16 15 C 0.03 0.66 4.45 -27.89 -0.12 0.54 16 16 C -0.52 -13.66 8.39 -34.45 -0.29 -13.95 16 17 H 0.06 1.43 7.06 -52.48 -0.37 1.06 16 18 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 19 N -0.89 -26.19 13.29 55.43 0.74 -25.46 16 20 Si 0.89 20.84 29.54 -169.99 -5.02 15.82 16 21 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 C -0.13 -2.13 5.36 -26.59 -0.14 -2.28 16 25 C 0.11 1.63 6.44 -3.69 -0.02 1.61 16 26 H 0.06 0.46 8.11 -51.93 -0.42 0.04 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.49 8.11 -51.93 -0.42 0.06 16 30 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.09 0.78 6.76 -51.93 -0.35 0.43 16 32 H 0.09 1.04 7.86 -51.93 -0.41 0.63 16 33 H 0.08 0.83 4.08 -51.93 -0.21 0.62 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.09 1.47 6.91 -51.93 -0.36 1.11 16 36 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 38 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 41 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 42 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 43 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 44 H 0.09 1.30 7.00 -51.93 -0.36 0.94 16 LS Contribution 339.15 15.07 5.11 5.11 Total: -1.00 -31.12 339.15 -8.30 -39.42 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -7.41 Total: -0.64 kcal Atomic # 6 Polarization: -9.77 SS G_CDS: -0.89 Total: -10.66 kcal Atomic # 7 Polarization: -34.64 SS G_CDS: 0.22 Total: -34.42 kcal Atomic # 8 Polarization: -14.32 SS G_CDS: -0.31 Total: -14.64 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.12 -8.30 -39.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335384104.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.510 kcal (2) G-P(sol) polarization free energy of solvation -31.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds