Wall clock time and date at job start Tue Mar 31 2020 05:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 110.45853 * 2 1 4 4 C 1.54509 * 110.63185 * 237.31482 * 2 1 3 5 5 C 1.54477 * 104.06322 * 241.29790 * 4 2 1 6 6 O 1.44424 * 104.80526 * 23.98090 * 5 4 2 7 7 C 1.44433 * 105.27110 * 319.48642 * 6 5 4 8 8 H 1.08999 * 110.46439 * 281.63406 * 7 6 5 9 9 C 1.50698 * 110.37055 * 159.34636 * 7 6 5 10 10 O 1.21282 * 120.00035 * 359.61708 * 9 7 6 11 11 N 1.34778 * 119.99707 * 179.61843 * 9 7 6 12 12 C 1.46925 * 120.62854 * 179.97438 * 11 9 7 13 13 C 1.53187 * 108.77688 * 126.36839 * 12 11 9 14 14 C 1.53046 * 109.31043 * 54.63722 * 13 12 11 15 15 C 1.53001 * 109.46008 * 178.63085 * 14 13 12 16 16 C 1.50702 * 109.46884 * 185.02824 * 15 14 13 17 17 H 1.07995 * 120.00144 * 359.97438 * 16 15 14 18 18 C 1.37881 * 119.99459 * 179.97438 * 16 15 14 19 19 N 1.31509 * 120.00459 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99386 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47195 * 90.00585 * 20 18 16 22 22 H 1.48501 * 109.46802 * 210.00020 * 20 18 16 23 23 H 1.48497 * 109.47227 * 329.99942 * 20 18 16 24 24 C 1.53043 * 109.53475 * 298.63386 * 14 13 12 25 25 C 1.46921 * 120.63351 * 359.97438 * 11 9 7 26 26 H 1.08991 * 109.47232 * 297.39921 * 1 2 3 27 27 H 1.08999 * 109.46813 * 57.39885 * 1 2 3 28 28 H 1.09001 * 109.46633 * 177.39426 * 1 2 3 29 29 H 1.09000 * 110.50784 * 359.94129 * 4 2 1 30 30 H 1.08995 * 110.50999 * 122.51614 * 4 2 1 31 31 H 1.09000 * 110.37359 * 142.80719 * 5 4 2 32 32 H 1.08997 * 110.37677 * 265.14586 * 5 4 2 33 33 H 1.09003 * 109.59222 * 6.58108 * 12 11 9 34 34 H 1.09006 * 109.70276 * 246.22737 * 12 11 9 35 35 H 1.08996 * 109.50293 * 294.68191 * 13 12 11 36 36 H 1.09003 * 109.52666 * 174.59627 * 13 12 11 37 37 H 1.09002 * 109.46068 * 58.65418 * 14 13 12 38 38 H 1.09008 * 109.46952 * 305.01991 * 15 14 13 39 39 H 1.08994 * 109.47471 * 65.02498 * 15 14 13 40 40 H 0.96999 * 120.00414 * 179.97438 * 19 18 16 41 41 H 1.09004 * 109.49679 * 181.31796 * 24 14 13 42 42 H 1.08994 * 109.49744 * 301.41312 * 24 14 13 43 43 H 1.09002 * 109.58756 * 353.41101 * 25 11 9 44 44 H 1.09002 * 109.59282 * 113.83967 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9110 1.0213 0.0000 4 6 2.0745 -0.7809 -1.2170 5 6 2.8802 -1.9399 -0.5895 6 8 2.3101 -2.1160 0.7258 7 6 2.0713 -0.7796 1.2189 8 1 3.0000 -0.3325 1.5733 9 6 1.0466 -0.8034 2.3236 10 8 0.5492 -1.8550 2.6668 11 7 0.6829 0.3439 2.9302 12 6 -0.3152 0.3367 4.0084 13 6 0.2768 1.0414 5.2329 14 6 0.7571 2.4377 4.8303 15 6 1.3180 3.1575 6.0584 16 6 1.6769 4.5741 5.6899 17 1 1.5210 4.9255 4.6807 18 6 2.2043 5.4212 6.6414 19 7 2.3937 4.9934 7.8704 20 14 2.6499 7.1769 6.1844 21 1 1.4767 8.0594 6.4077 22 1 3.7822 7.6358 7.0285 23 1 3.0450 7.2310 4.7540 24 6 1.8514 2.3156 3.7673 25 6 1.2768 1.6254 2.5259 26 1 -0.3633 0.4729 0.9123 27 1 -0.3633 0.5537 -0.8658 28 1 -0.3632 -1.0266 -0.0467 29 1 1.2536 -1.1690 -1.8200 30 1 2.7226 -0.1449 -1.8200 31 1 2.7604 -2.8484 -1.1796 32 1 3.9340 -1.6720 -0.5135 33 1 -0.5681 -0.6919 4.2655 34 1 -1.2124 0.8629 3.6821 35 1 1.1183 0.4631 5.6142 36 1 -0.4855 1.1283 6.0072 37 1 -0.0798 3.0072 4.4263 38 1 0.5671 3.1669 6.8485 39 1 2.2087 2.6367 6.4097 40 1 2.7651 5.5893 8.5396 41 1 2.2094 3.3093 3.4980 42 1 2.6780 1.7252 4.1623 43 1 2.0746 1.4471 1.8048 44 1 0.5108 2.2580 2.0774 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335500832.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:51 Heat of formation + Delta-G solvation = -95.261135 kcal Electronic energy + Delta-G solvation = -23295.606502 eV Core-core repulsion = 20019.234370 eV Total energy + Delta-G solvation = -3276.372131 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.87947 -38.88029 -37.15440 -34.39747 -33.45570 -32.14022 -31.08279 -29.92014 -28.11974 -27.08673 -24.72359 -23.31022 -22.81897 -21.85168 -20.88830 -19.83294 -18.65951 -17.21590 -16.72198 -16.37874 -16.18054 -15.49478 -14.82749 -14.70255 -14.54059 -13.97633 -13.69681 -13.58252 -13.45901 -12.99862 -12.79284 -12.74107 -12.63684 -12.25870 -11.83859 -11.68470 -11.47679 -11.23812 -11.12839 -11.04686 -10.98668 -10.78683 -10.71528 -10.46367 -10.14437 -10.06542 -9.72856 -9.46533 -9.28313 -8.99905 -8.39261 -8.36007 -6.02551 -4.04912 2.66380 2.87961 3.28471 3.35565 3.36957 3.82783 4.17787 4.34996 4.42382 4.49121 4.76701 4.88932 4.95132 5.07038 5.17967 5.31585 5.32407 5.37113 5.40876 5.44835 5.45699 5.51328 5.62673 5.64936 5.68937 5.74889 5.79710 5.95651 6.04721 6.06260 6.33220 6.35158 6.45829 6.52320 6.69495 6.92996 6.96008 7.07700 7.51808 7.64155 7.78762 7.97040 8.27255 8.38977 9.01676 9.59058 11.08686 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.025927 B = 0.003984 C = 0.003705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.684526 B = 7026.776675 C = 7554.971927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.116 4.116 3 H 0.095 0.905 4 C -0.150 4.150 5 C 0.041 3.959 6 O -0.345 6.345 7 C 0.059 3.941 8 H 0.094 0.906 9 C 0.526 3.474 10 O -0.531 6.531 11 N -0.603 5.603 12 C 0.113 3.887 13 C -0.130 4.130 14 C -0.080 4.080 15 C 0.027 3.973 16 C -0.517 4.517 17 H 0.056 0.944 18 C 0.057 3.943 19 N -0.895 5.895 20 Si 0.889 3.111 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.274 1.274 24 C -0.120 4.120 25 C 0.100 3.900 26 H 0.069 0.931 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.094 0.906 32 H 0.062 0.938 33 H 0.085 0.915 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.071 0.929 37 H 0.059 0.941 38 H 0.016 0.984 39 H 0.015 0.985 40 H 0.260 0.740 41 H 0.085 0.915 42 H 0.059 0.941 43 H 0.076 0.924 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.171 -8.919 -17.529 19.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.135 4.135 3 H 0.113 0.887 4 C -0.188 4.188 5 C -0.036 4.036 6 O -0.262 6.262 7 C -0.002 4.002 8 H 0.112 0.888 9 C 0.313 3.687 10 O -0.407 6.407 11 N -0.338 5.338 12 C -0.008 4.008 13 C -0.168 4.168 14 C -0.099 4.099 15 C -0.010 4.010 16 C -0.555 4.555 17 H 0.074 0.926 18 C -0.144 4.144 19 N -0.534 5.534 20 Si 0.717 3.283 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.199 1.199 24 C -0.158 4.158 25 C -0.023 4.023 26 H 0.088 0.912 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.112 0.888 32 H 0.080 0.920 33 H 0.104 0.896 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.077 0.923 38 H 0.034 0.966 39 H 0.034 0.966 40 H 0.070 0.930 41 H 0.104 0.896 42 H 0.078 0.922 43 H 0.095 0.905 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.418 -9.647 -17.060 19.650 hybrid contribution 0.477 1.368 -0.214 1.465 sum -0.941 -8.279 -17.274 19.179 Atomic orbital electron populations 1.22021 0.93527 1.02827 1.02910 1.22567 0.97755 0.99939 0.93209 0.88690 1.23052 1.00628 0.97368 0.97763 1.23479 0.96888 0.99156 0.84079 1.89271 1.82770 1.23538 1.30668 1.22963 0.97939 0.85269 0.94046 0.88799 1.19964 0.82576 0.83674 0.82484 1.90687 1.55234 1.30261 1.64558 1.48098 1.42383 1.06731 1.36584 1.21666 0.90084 1.02069 0.87012 1.22034 1.00969 0.97561 0.96223 1.21188 0.96988 0.93698 0.98002 1.19128 0.95970 0.94454 0.91438 1.21230 1.41591 0.96624 0.96094 0.92605 1.25022 0.95911 0.98443 0.95050 1.69959 1.45143 1.35899 1.02410 0.86651 0.78073 0.85241 0.78349 1.20740 1.21310 1.19916 1.21931 0.98761 1.00979 0.94168 1.22085 0.97682 0.84160 0.98337 0.91197 0.91961 0.91992 0.90243 0.90105 0.88752 0.91968 0.89648 0.91710 0.92036 0.91056 0.92304 0.96576 0.96621 0.93020 0.89614 0.92220 0.90547 0.91228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.59 8.04 37.16 0.30 -1.30 16 2 C -0.12 -1.10 2.63 -89.05 -0.23 -1.33 16 3 H 0.09 0.75 6.84 -51.93 -0.36 0.39 16 4 C -0.15 -1.17 6.74 -25.16 -0.17 -1.34 16 5 C 0.04 0.37 7.63 37.93 0.29 0.66 16 6 O -0.34 -4.82 10.91 -54.45 -0.59 -5.42 16 7 C 0.06 0.74 2.69 -27.11 -0.07 0.67 16 8 H 0.09 1.06 7.58 -51.93 -0.39 0.67 16 9 C 0.53 8.20 5.47 -10.99 -0.06 8.14 16 10 O -0.53 -10.32 15.96 -13.66 -0.22 -10.54 16 11 N -0.60 -8.66 2.07 -172.75 -0.36 -9.02 16 12 C 0.11 1.68 6.43 -3.71 -0.02 1.66 16 13 C -0.13 -2.16 5.36 -26.61 -0.14 -2.30 16 14 C -0.08 -1.50 2.10 -90.57 -0.19 -1.69 16 15 C 0.03 0.66 4.45 -27.88 -0.12 0.54 16 16 C -0.52 -13.73 8.39 -34.44 -0.29 -14.02 16 17 H 0.06 1.42 7.06 -52.49 -0.37 1.05 16 18 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 19 N -0.89 -26.31 13.29 55.43 0.74 -25.57 16 20 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 24 C -0.12 -1.98 5.19 -26.59 -0.14 -2.12 16 25 C 0.10 1.28 4.96 -3.70 -0.02 1.26 16 26 H 0.07 0.80 5.40 -51.93 -0.28 0.52 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.08 0.59 7.74 -51.93 -0.40 0.19 16 30 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.09 1.33 7.01 -51.93 -0.36 0.97 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.02 0.42 8.14 -51.92 -0.42 0.00 16 39 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 41 H 0.09 1.49 6.91 -51.93 -0.36 1.13 16 42 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.08 0.81 4.47 -51.93 -0.23 0.57 16 44 H 0.07 0.82 8.02 -51.93 -0.42 0.40 16 LS Contribution 335.66 15.07 5.06 5.06 Total: -1.00 -32.20 335.66 -8.75 -40.95 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -7.38 Total: -1.66 kcal Atomic # 6 Polarization: -8.72 SS G_CDS: -0.97 Total: -9.70 kcal Atomic # 7 Polarization: -34.97 SS G_CDS: 0.38 Total: -34.59 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: -0.81 Total: -15.96 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.20 -8.75 -40.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335500832.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.309 kcal (2) G-P(sol) polarization free energy of solvation -32.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds