Wall clock time and date at job start Tue Mar 31 2020 05:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 110.45853 * 2 1 4 4 C 1.54509 * 110.63185 * 237.31482 * 2 1 3 5 5 C 1.54477 * 104.06322 * 241.29790 * 4 2 1 6 6 O 1.44424 * 104.80526 * 23.98090 * 5 4 2 7 7 C 1.44433 * 105.27110 * 319.48642 * 6 5 4 8 8 H 1.08999 * 110.46439 * 281.63406 * 7 6 5 9 9 C 1.50698 * 110.37055 * 159.34636 * 7 6 5 10 10 O 1.21282 * 120.00035 * 359.61708 * 9 7 6 11 11 N 1.34778 * 119.99707 * 179.61843 * 9 7 6 12 12 C 1.46925 * 120.62854 * 179.97438 * 11 9 7 13 13 C 1.53187 * 108.77688 * 126.36839 * 12 11 9 14 14 C 1.53046 * 109.31043 * 54.63722 * 13 12 11 15 15 C 1.53001 * 109.46008 * 178.63085 * 14 13 12 16 16 C 1.50702 * 109.46884 * 185.02824 * 15 14 13 17 17 H 1.07995 * 120.00144 * 359.97438 * 16 15 14 18 18 C 1.37881 * 119.99459 * 179.97438 * 16 15 14 19 19 N 1.31509 * 120.00459 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99386 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47195 * 90.00585 * 20 18 16 22 22 H 1.48501 * 109.46802 * 210.00020 * 20 18 16 23 23 H 1.48497 * 109.47227 * 329.99942 * 20 18 16 24 24 C 1.53043 * 109.53475 * 298.63386 * 14 13 12 25 25 C 1.46921 * 120.63351 * 359.97438 * 11 9 7 26 26 H 1.08991 * 109.47232 * 297.39921 * 1 2 3 27 27 H 1.08999 * 109.46813 * 57.39885 * 1 2 3 28 28 H 1.09001 * 109.46633 * 177.39426 * 1 2 3 29 29 H 1.09000 * 110.50784 * 359.94129 * 4 2 1 30 30 H 1.08995 * 110.50999 * 122.51614 * 4 2 1 31 31 H 1.09000 * 110.37359 * 142.80719 * 5 4 2 32 32 H 1.08997 * 110.37677 * 265.14586 * 5 4 2 33 33 H 1.09003 * 109.59222 * 6.58108 * 12 11 9 34 34 H 1.09006 * 109.70276 * 246.22737 * 12 11 9 35 35 H 1.08996 * 109.50293 * 294.68191 * 13 12 11 36 36 H 1.09003 * 109.52666 * 174.59627 * 13 12 11 37 37 H 1.09002 * 109.46068 * 58.65418 * 14 13 12 38 38 H 1.09008 * 109.46952 * 305.01991 * 15 14 13 39 39 H 1.08994 * 109.47471 * 65.02498 * 15 14 13 40 40 H 0.96999 * 120.00414 * 179.97438 * 19 18 16 41 41 H 1.09004 * 109.49679 * 181.31796 * 24 14 13 42 42 H 1.08994 * 109.49744 * 301.41312 * 24 14 13 43 43 H 1.09002 * 109.58756 * 353.41101 * 25 11 9 44 44 H 1.09002 * 109.59282 * 113.83967 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9110 1.0213 0.0000 4 6 2.0745 -0.7809 -1.2170 5 6 2.8802 -1.9399 -0.5895 6 8 2.3101 -2.1160 0.7258 7 6 2.0713 -0.7796 1.2189 8 1 3.0000 -0.3325 1.5733 9 6 1.0466 -0.8034 2.3236 10 8 0.5492 -1.8550 2.6668 11 7 0.6829 0.3439 2.9302 12 6 -0.3152 0.3367 4.0084 13 6 0.2768 1.0414 5.2329 14 6 0.7571 2.4377 4.8303 15 6 1.3180 3.1575 6.0584 16 6 1.6769 4.5741 5.6899 17 1 1.5210 4.9255 4.6807 18 6 2.2043 5.4212 6.6414 19 7 2.3937 4.9934 7.8704 20 14 2.6499 7.1769 6.1844 21 1 1.4767 8.0594 6.4077 22 1 3.7822 7.6358 7.0285 23 1 3.0450 7.2310 4.7540 24 6 1.8514 2.3156 3.7673 25 6 1.2768 1.6254 2.5259 26 1 -0.3633 0.4729 0.9123 27 1 -0.3633 0.5537 -0.8658 28 1 -0.3632 -1.0266 -0.0467 29 1 1.2536 -1.1690 -1.8200 30 1 2.7226 -0.1449 -1.8200 31 1 2.7604 -2.8484 -1.1796 32 1 3.9340 -1.6720 -0.5135 33 1 -0.5681 -0.6919 4.2655 34 1 -1.2124 0.8629 3.6821 35 1 1.1183 0.4631 5.6142 36 1 -0.4855 1.1283 6.0072 37 1 -0.0798 3.0072 4.4263 38 1 0.5671 3.1669 6.8485 39 1 2.2087 2.6367 6.4097 40 1 2.7651 5.5893 8.5396 41 1 2.2094 3.3093 3.4980 42 1 2.6780 1.7252 4.1623 43 1 2.0746 1.4471 1.8048 44 1 0.5108 2.2580 2.0774 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335500832.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:50 Heat of formation + Delta-G solvation = -114.045892 kcal Electronic energy + Delta-G solvation = -23296.421070 eV Core-core repulsion = 20019.234370 eV Total energy + Delta-G solvation = -3277.186700 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.91923 -39.92226 -38.50716 -35.84690 -34.67700 -33.76232 -32.28151 -30.83937 -29.73402 -28.08198 -26.30485 -24.35909 -24.10917 -23.12772 -21.85334 -21.17033 -19.89839 -18.40146 -18.17907 -17.65988 -17.35335 -16.55633 -16.40505 -15.77029 -15.73850 -15.21019 -14.93871 -14.69191 -14.56071 -14.36353 -14.23249 -13.80258 -13.71048 -13.51488 -13.39567 -12.95798 -12.75034 -12.52041 -12.35930 -12.32842 -12.21404 -12.13913 -11.84291 -11.74373 -11.65870 -11.31139 -11.06463 -10.93245 -10.84002 -10.57893 -10.49488 -9.63207 -8.14042 -6.23818 1.44235 1.44673 1.50457 1.55244 1.80119 2.44999 2.97773 3.20146 3.33562 3.50417 3.75510 3.91330 3.98511 4.05785 4.13686 4.19845 4.21617 4.28692 4.38862 4.43331 4.56005 4.63588 4.67118 4.74274 4.79328 4.86856 4.89519 4.95970 4.96787 5.07175 5.10087 5.15622 5.29229 5.31414 5.33958 5.41386 5.54423 5.59659 5.77616 5.84317 5.91642 6.30278 6.37785 6.93585 7.09744 7.45338 8.98094 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.025927 B = 0.003984 C = 0.003705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.684526 B = 7026.776675 C = 7554.971927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.112 4.112 3 H 0.122 0.878 4 C -0.142 4.142 5 C 0.032 3.968 6 O -0.385 6.385 7 C 0.056 3.944 8 H 0.109 0.891 9 C 0.521 3.479 10 O -0.579 6.579 11 N -0.601 5.601 12 C 0.120 3.880 13 C -0.122 4.122 14 C -0.072 4.072 15 C 0.031 3.969 16 C -0.524 4.524 17 H 0.071 0.929 18 C -0.004 4.004 19 N -0.940 5.940 20 Si 0.960 3.040 21 H -0.276 1.276 22 H -0.290 1.290 23 H -0.255 1.255 24 C -0.116 4.116 25 C 0.108 3.892 26 H 0.057 0.943 27 H 0.085 0.915 28 H 0.036 0.964 29 H 0.081 0.919 30 H 0.109 0.891 31 H 0.103 0.897 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.087 0.913 35 H 0.042 0.958 36 H 0.071 0.929 37 H 0.067 0.933 38 H -0.016 1.016 39 H -0.017 1.017 40 H 0.260 0.740 41 H 0.081 0.919 42 H 0.044 0.956 43 H 0.107 0.893 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.824 -7.356 -20.910 22.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.131 4.131 3 H 0.140 0.860 4 C -0.180 4.180 5 C -0.044 4.044 6 O -0.304 6.304 7 C -0.005 4.005 8 H 0.126 0.874 9 C 0.310 3.690 10 O -0.459 6.459 11 N -0.334 5.334 12 C -0.003 4.003 13 C -0.160 4.160 14 C -0.091 4.091 15 C -0.006 4.006 16 C -0.562 4.562 17 H 0.089 0.911 18 C -0.201 4.201 19 N -0.581 5.581 20 Si 0.786 3.214 21 H -0.202 1.202 22 H -0.216 1.216 23 H -0.179 1.179 24 C -0.154 4.154 25 C -0.014 4.014 26 H 0.076 0.924 27 H 0.104 0.896 28 H 0.056 0.944 29 H 0.099 0.901 30 H 0.128 0.872 31 H 0.121 0.879 32 H 0.096 0.904 33 H 0.093 0.907 34 H 0.105 0.895 35 H 0.061 0.939 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.002 0.998 39 H 0.001 0.999 40 H 0.069 0.931 41 H 0.100 0.900 42 H 0.063 0.937 43 H 0.125 0.875 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.069 -8.067 -20.474 22.032 hybrid contribution 0.365 0.825 0.900 1.274 sum -0.704 -7.243 -19.574 20.883 Atomic orbital electron populations 1.21996 0.94260 1.01493 1.03316 1.22658 0.97082 1.01045 0.92307 0.85959 1.23053 1.00912 0.96883 0.97129 1.23763 0.97826 1.00465 0.82358 1.89239 1.83426 1.24654 1.33054 1.23111 0.97486 0.85703 0.94226 0.87368 1.20629 0.82531 0.82982 0.82815 1.90658 1.57109 1.31963 1.66188 1.48159 1.41956 1.07259 1.36053 1.21555 0.90891 1.01393 0.86432 1.21916 1.00385 0.96395 0.97340 1.21037 0.97815 0.94009 0.96224 1.19033 0.93875 0.94564 0.93118 1.21681 1.40586 0.97322 0.96657 0.91082 1.25984 0.96029 1.03213 0.94907 1.70119 1.46559 1.37631 1.03756 0.85512 0.77603 0.79503 0.78830 1.20212 1.21610 1.17918 1.21828 0.97520 1.01027 0.95012 1.22161 0.99167 0.83164 0.96865 0.92405 0.89647 0.94435 0.90053 0.87221 0.87926 0.90355 0.90676 0.89525 0.93874 0.91053 0.91460 0.99768 0.99883 0.93136 0.90038 0.93731 0.87452 0.88851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.73 8.04 71.98 0.58 -2.15 16 2 C -0.11 -1.72 2.63 -9.78 -0.03 -1.75 16 3 H 0.12 1.24 6.84 -2.39 -0.02 1.22 16 4 C -0.14 -1.67 6.74 31.61 0.21 -1.45 16 5 C 0.03 0.50 7.63 72.48 0.55 1.06 16 6 O -0.38 -10.39 10.91 -130.60 -1.43 -11.82 16 7 C 0.06 1.29 2.69 30.35 0.08 1.37 16 8 H 0.11 2.15 7.58 -2.39 -0.02 2.13 16 9 C 0.52 15.86 5.47 87.66 0.48 16.34 16 10 O -0.58 -22.96 15.96 15.34 0.24 -22.71 16 11 N -0.60 -16.37 2.07 -818.85 -1.70 -18.07 16 12 C 0.12 3.47 6.43 86.36 0.56 4.02 16 13 C -0.12 -4.12 5.36 30.67 0.16 -3.96 16 14 C -0.07 -2.69 2.10 -10.76 -0.02 -2.71 16 15 C 0.03 1.57 4.45 29.85 0.13 1.70 16 16 C -0.52 -27.85 8.39 25.60 0.21 -27.64 16 17 H 0.07 3.48 7.06 -2.91 -0.02 3.46 16 18 C 0.00 -0.24 5.46 84.66 0.46 0.22 16 19 N -0.94 -56.68 13.29 21.45 0.28 -56.39 16 20 Si 0.96 42.53 29.54 68.60 2.03 44.55 16 21 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 22 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 23 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 24 C -0.12 -3.64 5.19 30.68 0.16 -3.48 16 25 C 0.11 2.43 4.96 86.37 0.43 2.85 16 26 H 0.06 1.16 5.40 -2.39 -0.01 1.15 16 27 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.08 0.94 7.74 -2.39 -0.02 0.92 16 30 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.07 2.37 7.01 -2.39 -0.02 2.36 16 34 H 0.09 2.16 8.14 -2.38 -0.02 2.14 16 35 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 37 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 38 H -0.02 -0.90 8.14 -2.38 -0.02 -0.92 16 39 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 40 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 41 H 0.08 2.65 6.91 -2.39 -0.02 2.64 16 42 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.11 1.80 4.47 -2.39 -0.01 1.79 16 44 H 0.09 1.77 8.02 -2.39 -0.02 1.75 16 Total: -1.00 -73.13 335.66 4.37 -68.75 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: 0.97 Total: 11.27 kcal Atomic # 6 Polarization: -19.55 SS G_CDS: 3.97 Total: -15.58 kcal Atomic # 7 Polarization: -73.05 SS G_CDS: -1.41 Total: -74.46 kcal Atomic # 8 Polarization: -33.35 SS G_CDS: -1.18 Total: -34.53 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.55 kcal Total: -73.13 4.37 -68.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335500832.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.294 kcal (2) G-P(sol) polarization free energy of solvation -73.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds