Wall clock time and date at job start Tue Mar 31 2020 06:11:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42904 * 113.99959 * 2 1 4 4 C 1.50701 * 110.01741 * 302.27590 * 3 2 1 5 5 O 1.21289 * 119.99728 * 133.46655 * 4 3 2 6 6 N 1.34774 * 120.00165 * 313.47359 * 4 3 2 7 7 C 1.46926 * 120.62952 * 174.24586 * 6 4 3 8 8 C 1.53199 * 108.77104 * 233.58197 * 7 6 4 9 9 C 1.53037 * 109.31482 * 305.36381 * 8 7 6 10 10 C 1.50694 * 109.45941 * 181.38760 * 9 8 7 11 11 H 1.07999 * 120.00057 * 359.97438 * 10 9 8 12 12 C 1.37885 * 119.99857 * 180.02562 * 10 9 8 13 13 N 1.31512 * 120.00025 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 119.99692 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47648 * 59.99957 * 14 12 10 16 16 H 1.48509 * 109.46785 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47205 * 299.99464 * 14 12 10 18 18 C 1.53036 * 109.53502 * 61.36729 * 9 8 7 19 19 C 1.46929 * 120.62955 * 354.21742 * 6 4 3 20 20 C 1.54262 * 110.03082 * 63.66818 * 3 2 1 21 21 C 1.54964 * 104.16062 * 95.75336 * 20 3 2 22 22 C 1.54891 * 102.77793 * 37.88885 * 21 20 3 23 23 C 1.53873 * 110.03390 * 180.88352 * 3 2 1 24 24 H 1.09004 * 109.47207 * 175.02982 * 1 2 3 25 25 H 1.09006 * 109.46999 * 295.01979 * 1 2 3 26 26 H 1.09001 * 109.47464 * 55.02401 * 1 2 3 27 27 H 1.08998 * 109.58739 * 113.80103 * 7 6 4 28 28 H 1.08993 * 109.58924 * 353.36788 * 7 6 4 29 29 H 1.08997 * 109.49558 * 185.41372 * 8 7 6 30 30 H 1.08996 * 109.49655 * 65.32093 * 8 7 6 31 31 H 1.09002 * 109.46196 * 301.34841 * 9 8 7 32 32 H 0.96995 * 119.99848 * 179.97438 * 13 12 10 33 33 H 1.08992 * 109.50247 * 58.58815 * 18 9 8 34 34 H 1.09008 * 109.49751 * 178.68582 * 18 9 8 35 35 H 1.08993 * 109.58586 * 246.20415 * 19 6 4 36 36 H 1.08999 * 109.58507 * 6.62887 * 19 6 4 37 37 H 1.09002 * 110.48755 * 214.40045 * 20 3 2 38 38 H 1.08997 * 110.48848 * 337.04195 * 20 3 2 39 39 H 1.09002 * 110.72348 * 279.57432 * 21 20 3 40 40 H 1.08997 * 110.76397 * 156.22115 * 21 20 3 41 41 H 1.08990 * 110.48804 * 203.40393 * 22 21 20 42 42 H 1.09001 * 110.48496 * 80.75895 * 22 21 20 43 43 H 1.08998 * 110.03251 * 359.95398 * 23 3 2 44 44 H 1.09007 * 110.03082 * 121.33459 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5292 2.0843 -1.1972 5 8 1.1437 3.2264 -1.0627 6 7 1.5274 1.5117 -2.4172 7 6 0.9460 2.2108 -3.5714 8 6 -0.0857 1.2930 -4.2351 9 6 0.5733 -0.0451 -4.5774 10 6 -0.4295 -0.9381 -5.2613 11 1 -1.4360 -0.5868 -5.4341 12 6 -0.0624 -2.2042 -5.6656 13 7 1.1632 -2.6322 -5.4547 14 14 -1.3053 -3.3109 -6.5139 15 1 -1.7782 -2.6590 -7.7616 16 1 -0.6664 -4.6100 -6.8450 17 1 -2.4594 -3.5439 -5.6090 18 6 1.0627 -0.7179 -3.2930 19 6 2.1074 0.1768 -2.6186 20 6 1.6378 2.0497 1.2989 21 6 2.8488 1.8076 2.2350 22 6 4.0530 1.8830 1.2638 23 6 3.5451 1.1992 -0.0223 24 1 -0.3634 -1.0238 -0.0890 25 1 -0.3633 0.4347 0.9313 26 1 -0.3634 0.5891 -0.8420 27 1 1.7325 2.4533 -4.2859 28 1 0.4586 3.1263 -3.2365 29 1 -0.4548 1.7608 -5.1477 30 1 -0.9167 1.1247 -3.5502 31 1 1.4196 0.1265 -5.2426 32 1 1.4213 -3.5230 -5.7387 33 1 0.2209 -0.8674 -2.6170 34 1 1.5110 -1.6816 -3.5351 35 1 2.9886 0.2536 -3.2554 36 1 2.3864 -0.2495 -1.6549 37 1 1.5123 3.1151 1.1056 38 1 0.7299 1.6301 1.7321 39 1 2.7873 0.8229 2.6984 40 1 2.9139 2.5887 2.9925 41 1 4.9067 1.3421 1.6719 42 1 4.3180 2.9214 1.0646 43 1 3.8467 0.1518 -0.0323 44 1 3.9421 1.7101 -0.8995 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335746480.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:50 Heat of formation + Delta-G solvation = -90.263273 kcal Electronic energy + Delta-G solvation = -24210.971809 eV Core-core repulsion = 20934.816401 eV Total energy + Delta-G solvation = -3276.155408 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.74491 -38.00422 -36.79605 -35.63242 -33.48063 -31.33383 -30.07770 -29.00483 -28.43540 -26.39282 -25.93184 -23.35128 -22.30578 -21.24400 -20.76307 -19.36963 -18.54908 -17.26093 -16.37173 -16.21521 -15.89864 -15.19371 -14.82677 -14.55607 -14.54330 -13.79851 -13.66959 -13.21192 -12.98382 -12.76859 -12.67263 -12.26464 -12.22060 -11.79150 -11.57715 -11.47485 -11.32630 -11.12686 -11.05768 -10.94301 -10.86880 -10.67887 -10.61456 -10.38358 -10.06606 -9.99940 -9.59362 -9.17963 -9.09528 -8.72037 -8.35061 -7.98068 -6.01995 -4.08437 2.82477 3.29443 3.34462 3.37108 3.39200 3.80513 4.40955 4.44045 4.55749 4.77318 5.02683 5.27504 5.28815 5.35456 5.47317 5.52182 5.60352 5.67000 5.71581 5.75793 5.81208 5.87386 5.93310 5.96044 5.97869 6.03281 6.13291 6.14405 6.22182 6.30422 6.45872 6.51843 6.67583 6.86700 7.01835 7.15348 7.22513 7.34247 7.67904 7.93460 7.94735 8.06855 8.41237 8.49561 8.94620 9.56436 11.03304 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.028238 B = 0.004952 C = 0.004725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.317677 B = 5653.291724 C = 5925.063420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.359 6.359 3 C 0.100 3.900 4 C 0.493 3.507 5 O -0.556 6.556 6 N -0.588 5.588 7 C 0.108 3.892 8 C -0.122 4.122 9 C 0.048 3.952 10 C -0.513 4.513 11 H 0.053 0.947 12 C 0.063 3.937 13 N -0.890 5.890 14 Si 0.890 3.110 15 H -0.278 1.278 16 H -0.287 1.287 17 H -0.278 1.278 18 C -0.118 4.118 19 C 0.090 3.910 20 C -0.142 4.142 21 C -0.119 4.119 22 C -0.122 4.122 23 C -0.109 4.109 24 H 0.092 0.908 25 H 0.041 0.959 26 H 0.049 0.951 27 H 0.060 0.940 28 H 0.075 0.925 29 H 0.059 0.941 30 H 0.049 0.951 31 H 0.026 0.974 32 H 0.261 0.739 33 H 0.039 0.961 34 H 0.102 0.898 35 H 0.055 0.945 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.074 0.926 39 H 0.070 0.930 40 H 0.068 0.932 41 H 0.071 0.929 42 H 0.068 0.932 43 H 0.089 0.911 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.309 5.947 12.571 14.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.277 6.277 3 C 0.058 3.942 4 C 0.279 3.721 5 O -0.436 6.436 6 N -0.319 5.319 7 C -0.014 4.014 8 C -0.160 4.160 9 C 0.029 3.971 10 C -0.551 4.551 11 H 0.071 0.929 12 C -0.138 4.138 13 N -0.529 5.529 14 Si 0.718 3.282 15 H -0.204 1.204 16 H -0.213 1.213 17 H -0.204 1.204 18 C -0.156 4.156 19 C -0.031 4.031 20 C -0.180 4.180 21 C -0.156 4.156 22 C -0.159 4.159 23 C -0.147 4.147 24 H 0.111 0.889 25 H 0.060 0.940 26 H 0.067 0.933 27 H 0.078 0.922 28 H 0.094 0.906 29 H 0.078 0.922 30 H 0.068 0.932 31 H 0.044 0.956 32 H 0.071 0.929 33 H 0.058 0.942 34 H 0.121 0.879 35 H 0.073 0.927 36 H 0.113 0.887 37 H 0.112 0.888 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.086 0.914 41 H 0.090 0.910 42 H 0.086 0.914 43 H 0.108 0.892 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.334 6.193 12.567 14.665 hybrid contribution -0.944 -0.584 -0.708 1.317 sum 3.390 5.609 11.859 13.549 Atomic orbital electron populations 1.22881 0.80708 1.03419 1.00145 1.87992 1.20206 1.25197 1.94330 1.22351 0.95294 0.83768 0.92814 1.21099 0.78683 0.87246 0.85056 1.90616 1.49257 1.18278 1.85459 1.48283 1.57045 1.19072 1.07531 1.21737 0.96844 0.95873 0.86944 1.21998 0.97082 0.98036 0.98862 1.18650 0.95605 0.89794 0.93036 1.21153 0.97425 0.99012 1.37540 0.92873 1.24945 0.95170 0.97918 0.95802 1.69830 1.17308 1.18595 1.47188 0.86697 0.81541 0.79886 0.80085 1.20355 1.21302 1.20375 1.21949 0.96361 1.00568 0.96748 1.22391 0.97191 0.81397 1.02127 1.22900 0.98899 1.02383 0.93786 1.22453 0.94152 1.01767 0.97262 1.22352 0.98018 1.00758 0.94792 1.22210 0.90582 1.02916 0.99009 0.88937 0.94028 0.93284 0.92195 0.90615 0.92211 0.93182 0.95608 0.92929 0.94243 0.87949 0.92697 0.88685 0.88846 0.90723 0.91132 0.91353 0.91041 0.91363 0.89224 0.90593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 9.84 101.05 0.99 1.35 16 2 O -0.36 -5.50 7.67 -35.23 -0.27 -5.78 16 3 C 0.10 1.48 0.53 -90.66 -0.05 1.43 16 4 C 0.49 8.76 4.91 -10.99 -0.05 8.70 16 5 O -0.56 -11.13 14.85 5.55 0.08 -11.05 16 6 N -0.59 -10.80 2.81 -172.76 -0.49 -11.28 16 7 C 0.11 2.02 6.42 -3.71 -0.02 2.00 16 8 C -0.12 -2.50 5.30 -26.61 -0.14 -2.64 16 9 C 0.05 1.13 2.06 -91.74 -0.19 0.95 16 10 C -0.51 -13.63 8.56 -34.44 -0.29 -13.93 16 11 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 12 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 13 N -0.89 -24.42 11.30 55.43 0.63 -23.79 16 14 Si 0.89 20.82 29.54 -169.99 -5.02 15.80 16 15 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 16 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 17 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 18 C -0.12 -2.61 5.15 -26.61 -0.14 -2.75 16 19 C 0.09 1.68 5.60 -3.71 -0.02 1.66 16 20 C -0.14 -1.85 5.78 -25.03 -0.14 -1.99 16 21 C -0.12 -1.23 6.91 -24.70 -0.17 -1.40 16 22 C -0.12 -1.26 6.83 -25.07 -0.17 -1.43 16 23 C -0.11 -1.39 5.10 -25.62 -0.13 -1.52 16 24 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 25 H 0.04 0.52 6.38 -51.93 -0.33 0.19 16 26 H 0.05 0.82 6.73 -51.93 -0.35 0.47 16 27 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.08 1.40 7.04 -51.93 -0.37 1.04 16 29 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 33 H 0.04 0.88 7.47 -51.93 -0.39 0.49 16 34 H 0.10 2.55 6.03 -51.92 -0.31 2.24 16 35 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.10 1.65 3.97 -51.93 -0.21 1.44 16 37 H 0.09 1.34 6.77 -51.93 -0.35 0.99 16 38 H 0.07 0.93 6.09 -51.93 -0.32 0.61 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.09 1.09 7.73 -51.93 -0.40 0.69 16 44 H 0.08 1.00 7.67 -51.93 -0.40 0.60 16 LS Contribution 329.13 15.07 4.96 4.96 Total: -1.00 -28.63 329.13 -7.92 -36.56 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -7.19 Total: 2.57 kcal Atomic # 6 Polarization: -7.36 SS G_CDS: -0.63 Total: -7.98 kcal Atomic # 7 Polarization: -35.22 SS G_CDS: 0.14 Total: -35.08 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: -0.19 Total: -16.82 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -28.63 -7.92 -36.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335746480.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.708 kcal (2) G-P(sol) polarization free energy of solvation -28.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds