Wall clock time and date at job start Tue Mar 31 2020 06:11:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42904 * 113.99959 * 2 1 4 4 C 1.50701 * 110.01741 * 302.27590 * 3 2 1 5 5 O 1.21289 * 119.99728 * 133.46655 * 4 3 2 6 6 N 1.34774 * 120.00165 * 313.47359 * 4 3 2 7 7 C 1.46926 * 120.62952 * 174.24586 * 6 4 3 8 8 C 1.53199 * 108.77104 * 233.58197 * 7 6 4 9 9 C 1.53037 * 109.31482 * 305.36381 * 8 7 6 10 10 C 1.50694 * 109.45941 * 181.38760 * 9 8 7 11 11 H 1.07999 * 120.00057 * 359.97438 * 10 9 8 12 12 C 1.37885 * 119.99857 * 180.02562 * 10 9 8 13 13 N 1.31512 * 120.00025 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 119.99692 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47648 * 59.99957 * 14 12 10 16 16 H 1.48509 * 109.46785 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47205 * 299.99464 * 14 12 10 18 18 C 1.53036 * 109.53502 * 61.36729 * 9 8 7 19 19 C 1.46929 * 120.62955 * 354.21742 * 6 4 3 20 20 C 1.54262 * 110.03082 * 63.66818 * 3 2 1 21 21 C 1.54964 * 104.16062 * 95.75336 * 20 3 2 22 22 C 1.54891 * 102.77793 * 37.88885 * 21 20 3 23 23 C 1.53873 * 110.03390 * 180.88352 * 3 2 1 24 24 H 1.09004 * 109.47207 * 175.02982 * 1 2 3 25 25 H 1.09006 * 109.46999 * 295.01979 * 1 2 3 26 26 H 1.09001 * 109.47464 * 55.02401 * 1 2 3 27 27 H 1.08998 * 109.58739 * 113.80103 * 7 6 4 28 28 H 1.08993 * 109.58924 * 353.36788 * 7 6 4 29 29 H 1.08997 * 109.49558 * 185.41372 * 8 7 6 30 30 H 1.08996 * 109.49655 * 65.32093 * 8 7 6 31 31 H 1.09002 * 109.46196 * 301.34841 * 9 8 7 32 32 H 0.96995 * 119.99848 * 179.97438 * 13 12 10 33 33 H 1.08992 * 109.50247 * 58.58815 * 18 9 8 34 34 H 1.09008 * 109.49751 * 178.68582 * 18 9 8 35 35 H 1.08993 * 109.58586 * 246.20415 * 19 6 4 36 36 H 1.08999 * 109.58507 * 6.62887 * 19 6 4 37 37 H 1.09002 * 110.48755 * 214.40045 * 20 3 2 38 38 H 1.08997 * 110.48848 * 337.04195 * 20 3 2 39 39 H 1.09002 * 110.72348 * 279.57432 * 21 20 3 40 40 H 1.08997 * 110.76397 * 156.22115 * 21 20 3 41 41 H 1.08990 * 110.48804 * 203.40393 * 22 21 20 42 42 H 1.09001 * 110.48496 * 80.75895 * 22 21 20 43 43 H 1.08998 * 110.03251 * 359.95398 * 23 3 2 44 44 H 1.09007 * 110.03082 * 121.33459 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5292 2.0843 -1.1972 5 8 1.1437 3.2264 -1.0627 6 7 1.5274 1.5117 -2.4172 7 6 0.9460 2.2108 -3.5714 8 6 -0.0857 1.2930 -4.2351 9 6 0.5733 -0.0451 -4.5774 10 6 -0.4295 -0.9381 -5.2613 11 1 -1.4360 -0.5868 -5.4341 12 6 -0.0624 -2.2042 -5.6656 13 7 1.1632 -2.6322 -5.4547 14 14 -1.3053 -3.3109 -6.5139 15 1 -1.7782 -2.6590 -7.7616 16 1 -0.6664 -4.6100 -6.8450 17 1 -2.4594 -3.5439 -5.6090 18 6 1.0627 -0.7179 -3.2930 19 6 2.1074 0.1768 -2.6186 20 6 1.6378 2.0497 1.2989 21 6 2.8488 1.8076 2.2350 22 6 4.0530 1.8830 1.2638 23 6 3.5451 1.1992 -0.0223 24 1 -0.3634 -1.0238 -0.0890 25 1 -0.3633 0.4347 0.9313 26 1 -0.3634 0.5891 -0.8420 27 1 1.7325 2.4533 -4.2859 28 1 0.4586 3.1263 -3.2365 29 1 -0.4548 1.7608 -5.1477 30 1 -0.9167 1.1247 -3.5502 31 1 1.4196 0.1265 -5.2426 32 1 1.4213 -3.5230 -5.7387 33 1 0.2209 -0.8674 -2.6170 34 1 1.5110 -1.6816 -3.5351 35 1 2.9886 0.2536 -3.2554 36 1 2.3864 -0.2495 -1.6549 37 1 1.5123 3.1151 1.1056 38 1 0.7299 1.6301 1.7321 39 1 2.7873 0.8229 2.6984 40 1 2.9139 2.5887 2.9925 41 1 4.9067 1.3421 1.6719 42 1 4.3180 2.9214 1.0646 43 1 3.8467 0.1518 -0.0323 44 1 3.9421 1.7101 -0.8995 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335746480.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:49 Heat of formation + Delta-G solvation = -105.910340 kcal Electronic energy + Delta-G solvation = -24211.650317 eV Core-core repulsion = 20934.816401 eV Total energy + Delta-G solvation = -3276.833916 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.05948 -39.36956 -38.35839 -36.69851 -35.31831 -33.11111 -31.75941 -30.09011 -29.49835 -28.01395 -27.27967 -25.00178 -23.96499 -22.68527 -21.66811 -20.85427 -19.99471 -18.73904 -18.22717 -17.50046 -17.20962 -16.53470 -16.39379 -16.10454 -15.69366 -15.18152 -15.00680 -14.76824 -14.60782 -14.28292 -14.08622 -13.84537 -13.37993 -13.32412 -13.04787 -12.79667 -12.71391 -12.69357 -12.48676 -12.16879 -12.12487 -12.05950 -11.89233 -11.86273 -11.52792 -11.46784 -11.17718 -11.02209 -10.87778 -10.43812 -10.13511 -9.57367 -8.06676 -6.20356 1.41136 1.43109 1.43687 1.50881 1.98641 2.44468 2.64337 3.19785 3.29598 3.56008 3.62551 4.09532 4.18644 4.23723 4.28986 4.31839 4.35087 4.43079 4.48289 4.50713 4.55009 4.60797 4.72705 4.77955 4.79103 4.86045 4.89847 4.96100 5.01603 5.08501 5.16181 5.18687 5.22567 5.25080 5.43175 5.46409 5.53234 5.65082 5.98831 6.00036 6.14553 6.39391 6.46695 6.88902 7.04726 7.47277 8.96604 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.028238 B = 0.004952 C = 0.004725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.317677 B = 5653.291724 C = 5925.063420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.364 6.364 3 C 0.098 3.902 4 C 0.491 3.509 5 O -0.579 6.579 6 N -0.592 5.592 7 C 0.113 3.887 8 C -0.111 4.111 9 C 0.045 3.955 10 C -0.535 4.535 11 H 0.047 0.953 12 C 0.020 3.980 13 N -0.911 5.911 14 Si 0.948 3.052 15 H -0.275 1.275 16 H -0.283 1.283 17 H -0.274 1.274 18 C -0.106 4.106 19 C 0.106 3.894 20 C -0.142 4.142 21 C -0.111 4.111 22 C -0.117 4.117 23 C -0.112 4.112 24 H 0.099 0.901 25 H 0.063 0.937 26 H 0.022 0.978 27 H 0.068 0.932 28 H 0.079 0.921 29 H 0.063 0.937 30 H 0.042 0.958 31 H -0.001 1.001 32 H 0.262 0.738 33 H 0.032 0.968 34 H 0.076 0.924 35 H 0.055 0.945 36 H 0.112 0.888 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.086 0.914 41 H 0.094 0.906 42 H 0.069 0.931 43 H 0.096 0.904 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.739 5.885 14.082 15.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.283 6.283 3 C 0.056 3.944 4 C 0.279 3.721 5 O -0.460 6.460 6 N -0.323 5.323 7 C -0.010 4.010 8 C -0.149 4.149 9 C 0.027 3.973 10 C -0.573 4.573 11 H 0.065 0.935 12 C -0.179 4.179 13 N -0.550 5.550 14 Si 0.774 3.226 15 H -0.200 1.200 16 H -0.208 1.208 17 H -0.199 1.199 18 C -0.144 4.144 19 C -0.016 4.016 20 C -0.180 4.180 21 C -0.149 4.149 22 C -0.154 4.154 23 C -0.150 4.150 24 H 0.118 0.882 25 H 0.081 0.919 26 H 0.041 0.959 27 H 0.086 0.914 28 H 0.097 0.903 29 H 0.082 0.918 30 H 0.061 0.939 31 H 0.018 0.982 32 H 0.071 0.929 33 H 0.051 0.949 34 H 0.094 0.906 35 H 0.073 0.927 36 H 0.130 0.870 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.098 0.902 40 H 0.105 0.895 41 H 0.112 0.888 42 H 0.088 0.912 43 H 0.114 0.886 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.764 6.137 14.086 16.086 hybrid contribution -1.110 -0.540 -1.206 1.725 sum 3.655 5.597 12.880 14.512 Atomic orbital electron populations 1.22912 0.80484 1.03614 1.00144 1.87974 1.20506 1.25567 1.94246 1.22541 0.96566 0.83314 0.91993 1.21729 0.77736 0.87165 0.85426 1.90599 1.50153 1.19484 1.85795 1.48301 1.57249 1.18849 1.07919 1.21641 0.96612 0.95419 0.87310 1.21834 0.97119 0.96882 0.99063 1.18613 0.94385 0.91192 0.93116 1.21484 0.97735 0.99899 1.38228 0.93464 1.25620 0.96794 0.99133 0.96397 1.69951 1.18585 1.18840 1.47661 0.85773 0.79505 0.78205 0.79097 1.20043 1.20849 1.19944 1.21697 0.96785 0.99880 0.96081 1.22185 0.95812 0.81006 1.02580 1.22904 1.00544 1.01041 0.93462 1.22460 0.92453 1.02939 0.97020 1.22370 0.98714 1.00915 0.93419 1.22292 0.88888 1.03598 1.00204 0.88238 0.91853 0.95882 0.91359 0.90253 0.91790 0.93940 0.98248 0.92923 0.94932 0.90617 0.92657 0.86994 0.90395 0.90300 0.90246 0.89507 0.88763 0.91219 0.88581 0.91389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.69 9.84 113.37 1.12 1.80 16 2 O -0.36 -10.64 7.67 -148.98 -1.14 -11.78 16 3 C 0.10 2.75 0.53 -10.82 -0.01 2.75 16 4 C 0.49 17.14 4.91 87.66 0.43 17.57 16 5 O -0.58 -22.90 14.85 -3.06 -0.05 -22.95 16 6 N -0.59 -21.58 2.81 -818.89 -2.30 -23.88 16 7 C 0.11 4.19 6.42 86.36 0.55 4.75 16 8 C -0.11 -4.62 5.30 30.67 0.16 -4.45 16 9 C 0.05 2.21 2.06 -11.52 -0.02 2.19 16 10 C -0.54 -28.91 8.56 25.60 0.22 -28.70 16 11 H 0.05 2.54 7.74 -2.91 -0.02 2.52 16 12 C 0.02 1.06 5.30 84.66 0.45 1.51 16 13 N -0.91 -50.59 11.30 21.45 0.24 -50.35 16 14 Si 0.95 42.77 29.54 68.60 2.03 44.80 16 15 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 16 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 17 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 18 C -0.11 -4.77 5.15 30.67 0.16 -4.61 16 19 C 0.11 3.92 5.60 86.36 0.48 4.40 16 20 C -0.14 -3.41 5.78 31.69 0.18 -3.23 16 21 C -0.11 -1.95 6.91 31.91 0.22 -1.73 16 22 C -0.12 -2.05 6.83 31.67 0.22 -1.84 16 23 C -0.11 -2.61 5.10 31.32 0.16 -2.45 16 24 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 25 H 0.06 1.49 6.38 -2.38 -0.02 1.48 16 26 H 0.02 0.76 6.73 -2.39 -0.02 0.75 16 27 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 28 H 0.08 2.92 7.04 -2.39 -0.02 2.90 16 29 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 30 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 32 H 0.26 13.90 8.31 -92.71 -0.77 13.13 16 33 H 0.03 1.47 7.47 -2.39 -0.02 1.45 16 34 H 0.08 3.85 6.03 -2.38 -0.01 3.84 16 35 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.11 3.79 3.97 -2.39 -0.01 3.78 16 37 H 0.08 2.14 6.77 -2.39 -0.02 2.12 16 38 H 0.08 1.80 6.09 -2.39 -0.01 1.78 16 39 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.10 2.11 7.73 -2.39 -0.02 2.10 16 44 H 0.07 1.69 7.67 -2.38 -0.02 1.67 16 Total: -1.00 -61.20 329.13 4.08 -57.12 By element: Atomic # 1 Polarization: 18.09 SS G_CDS: 0.98 Total: 19.07 kcal Atomic # 6 Polarization: -16.35 SS G_CDS: 4.32 Total: -12.03 kcal Atomic # 7 Polarization: -72.17 SS G_CDS: -2.06 Total: -74.23 kcal Atomic # 8 Polarization: -33.54 SS G_CDS: -1.19 Total: -34.73 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Total: -61.20 4.08 -57.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335746480.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.792 kcal (2) G-P(sol) polarization free energy of solvation -61.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds