Wall clock time and date at job start Tue Mar 31 2020 05:36:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46506 * 109.47225 * 2 1 4 4 C 1.37092 * 120.00031 * 83.78139 * 3 2 1 5 5 H 1.08002 * 120.00109 * 167.26672 * 4 3 2 6 6 C 1.38953 * 119.99783 * 347.27677 * 4 3 2 7 7 N 1.31407 * 120.00219 * 5.39971 * 6 4 3 8 8 Si 1.86803 * 119.99863 * 185.40492 * 6 4 3 9 9 H 1.48502 * 109.47046 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47208 * 119.99459 * 8 6 4 11 11 H 1.48497 * 109.47246 * 239.99661 * 8 6 4 12 12 C 1.34777 * 119.99929 * 263.78773 * 3 2 1 13 13 O 1.21294 * 120.00231 * 4.84468 * 12 3 2 14 14 C 1.50703 * 119.99783 * 184.84442 * 12 3 2 15 15 H 1.08995 * 109.41344 * 338.04981 * 14 12 3 16 16 C 1.52951 * 109.41354 * 218.18511 * 14 12 3 17 17 C 1.53232 * 109.40655 * 176.29711 * 16 14 12 18 18 C 1.51271 * 108.53339 * 54.62685 * 17 16 14 19 19 O 1.20758 * 120.84354 * 128.67548 * 18 17 16 20 20 C 1.51265 * 118.30154 * 308.65195 * 18 17 16 21 21 H 1.09007 * 109.62406 * 171.25143 * 20 18 17 22 22 C 1.52999 * 109.63047 * 291.63494 * 20 18 17 23 23 C 1.53234 * 108.69235 * 51.44872 * 20 18 17 24 24 C 1.52996 * 109.48505 * 65.25375 * 23 20 18 25 25 C 1.53004 * 109.48058 * 185.29571 * 23 20 18 26 26 H 1.09001 * 109.47425 * 189.22930 * 1 2 3 27 27 H 1.09005 * 109.47094 * 309.22564 * 1 2 3 28 28 H 1.08999 * 109.47295 * 69.22376 * 1 2 3 29 29 H 1.09004 * 109.46796 * 240.00782 * 2 1 3 30 30 H 1.08997 * 109.47257 * 120.00297 * 2 1 3 31 31 H 0.97005 * 120.00052 * 180.02562 * 7 6 4 32 32 H 1.09010 * 109.48242 * 56.31709 * 16 14 12 33 33 H 1.08997 * 109.48708 * 296.27756 * 16 14 12 34 34 H 1.09003 * 109.62565 * 294.91672 * 17 16 14 35 35 H 1.08993 * 109.63061 * 174.34408 * 17 16 14 36 36 H 1.08997 * 109.46959 * 59.62122 * 22 20 18 37 37 H 1.08997 * 109.46766 * 299.62336 * 22 20 18 38 38 H 1.08991 * 109.46933 * 179.61985 * 22 20 18 39 39 H 1.08999 * 109.47263 * 59.99736 * 24 23 20 40 40 H 1.09001 * 109.46996 * 179.97438 * 24 23 20 41 41 H 1.09000 * 109.47231 * 300.00070 * 24 23 20 42 42 H 1.09001 * 109.47097 * 67.13338 * 25 23 20 43 43 H 1.09003 * 109.47215 * 187.14015 * 25 23 20 44 44 H 1.09007 * 109.46861 * 307.13354 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1256 2.0704 1.1803 5 1 2.6711 3.0020 1.2140 6 6 1.5328 1.5702 2.3331 7 7 0.9609 0.3872 2.3177 8 14 1.5486 2.5796 3.9049 9 1 2.2499 3.8655 3.6603 10 1 0.1527 2.8503 4.3334 11 1 2.2561 1.8253 4.9705 12 6 2.3621 1.9745 -1.1604 13 8 2.1849 1.3974 -2.2124 14 6 2.9667 3.3549 -1.1507 15 1 2.7009 3.8603 -0.2223 16 6 2.4270 4.1546 -2.3376 17 6 2.9694 5.5863 -2.2757 18 6 4.4790 5.5257 -2.1997 19 8 5.1635 6.1673 -2.9601 20 6 5.1091 4.6413 -1.1467 21 1 6.1845 4.5810 -1.3148 22 6 4.8380 5.2228 0.2423 23 6 4.4932 3.2419 -1.2480 24 6 4.8731 2.6130 -2.5900 25 6 5.0203 2.3686 -0.1075 26 1 -0.3634 -1.0144 0.1648 27 1 -0.3633 0.6499 0.7961 28 1 -0.3634 0.3645 -0.9608 29 1 1.8933 -0.5137 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 0.5467 0.0382 3.1225 32 1 1.3379 4.1764 -2.2962 33 1 2.7462 3.6848 -3.2679 34 1 2.5782 6.0882 -1.3907 35 1 2.6695 6.1306 -3.1711 36 1 3.7623 5.2819 0.4078 37 1 5.2712 6.2208 0.3092 38 1 5.2873 4.5801 0.9992 39 1 5.9581 2.5384 -2.6621 40 1 4.4352 1.6174 -2.6616 41 1 4.4969 3.2351 -3.4022 42 1 4.6427 2.7455 0.8430 43 1 4.6838 1.3418 -0.2507 44 1 6.1100 2.3964 -0.1024 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336348428.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:18 Heat of formation + Delta-G solvation = -71.950888 kcal Electronic energy + Delta-G solvation = -24730.190948 eV Core-core repulsion = 21454.829624 eV Total energy + Delta-G solvation = -3275.361323 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.73204 -38.66869 -36.78421 -35.08837 -32.82349 -31.48149 -31.14608 -29.87170 -27.41367 -26.70190 -24.86973 -24.36681 -22.79846 -21.45103 -20.21641 -19.14287 -17.77957 -16.70723 -16.25642 -15.62022 -15.42477 -14.74637 -14.51518 -14.27226 -14.07868 -13.72773 -13.30089 -13.16093 -12.73172 -12.51015 -12.31635 -12.16659 -12.06714 -11.77424 -11.57890 -11.47813 -11.35834 -11.28424 -11.17191 -10.99104 -10.83729 -10.76636 -10.49958 -10.34296 -10.19952 -10.10682 -9.87636 -9.55749 -9.08185 -8.82897 -8.23691 -7.75193 -6.26652 -3.93328 2.12816 3.04236 3.14804 3.16901 3.85494 4.00831 4.25718 4.68971 4.80846 4.90563 5.02487 5.16599 5.30646 5.39725 5.49536 5.57182 5.63413 5.72150 5.86077 5.95074 6.01647 6.04084 6.08006 6.14566 6.21744 6.32681 6.35905 6.44969 6.48902 6.59842 6.63780 6.69656 6.83043 6.86541 6.91532 6.95408 7.11402 7.31650 7.53328 7.65383 7.78585 7.86012 8.44278 9.04788 9.55251 9.93995 10.60126 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.018884 B = 0.007329 C = 0.006165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.361225 B = 3819.385408 C = 4540.974093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.134 3.866 3 N -0.440 5.440 4 C -0.322 4.322 5 H 0.102 0.898 6 C 0.030 3.970 7 N -0.866 5.866 8 Si 0.918 3.082 9 H -0.269 1.269 10 H -0.281 1.281 11 H -0.282 1.282 12 C 0.465 3.535 13 O -0.608 6.608 14 C -0.094 4.094 15 H 0.099 0.901 16 C -0.097 4.097 17 C -0.170 4.170 18 C 0.374 3.626 19 O -0.470 6.470 20 C -0.128 4.128 21 H 0.090 0.910 22 C -0.146 4.146 23 C -0.035 4.035 24 C -0.147 4.147 25 C -0.139 4.139 26 H 0.032 0.968 27 H 0.080 0.920 28 H 0.012 0.988 29 H 0.032 0.968 30 H 0.106 0.894 31 H 0.264 0.736 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.098 0.902 35 H 0.085 0.915 36 H 0.068 0.932 37 H 0.053 0.947 38 H 0.075 0.925 39 H 0.046 0.954 40 H 0.076 0.924 41 H 0.050 0.950 42 H 0.072 0.928 43 H 0.063 0.937 44 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.179 6.064 -0.775 7.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.012 3.988 3 N -0.157 5.157 4 C -0.450 4.450 5 H 0.120 0.880 6 C -0.173 4.173 7 N -0.506 5.506 8 Si 0.745 3.255 9 H -0.193 1.193 10 H -0.207 1.207 11 H -0.208 1.208 12 C 0.253 3.747 13 O -0.495 6.495 14 C -0.115 4.115 15 H 0.117 0.883 16 C -0.135 4.135 17 C -0.207 4.207 18 C 0.250 3.750 19 O -0.344 6.344 20 C -0.147 4.147 21 H 0.109 0.891 22 C -0.203 4.203 23 C -0.036 4.036 24 C -0.204 4.204 25 C -0.196 4.196 26 H 0.051 0.949 27 H 0.099 0.901 28 H 0.031 0.969 29 H 0.050 0.950 30 H 0.124 0.876 31 H 0.075 0.925 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.116 0.884 35 H 0.103 0.897 36 H 0.087 0.913 37 H 0.072 0.928 38 H 0.094 0.906 39 H 0.065 0.935 40 H 0.095 0.905 41 H 0.069 0.931 42 H 0.091 0.909 43 H 0.082 0.918 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 4.339 5.957 -1.502 7.522 hybrid contribution -0.198 0.395 1.046 1.135 sum 4.141 6.352 -0.456 7.596 Atomic orbital electron populations 1.21988 0.97105 1.00249 0.99125 1.21389 0.94296 0.82904 1.00258 1.43858 1.54933 1.11802 1.05151 1.19773 1.33169 1.06028 0.85995 0.88037 1.25246 0.96142 0.96383 0.99510 1.70259 1.36201 1.15942 1.28224 0.85989 0.78146 0.79684 0.81650 1.19326 1.20719 1.20796 1.19747 0.83655 0.87556 0.83767 1.90512 1.61146 1.66725 1.31113 1.21356 0.94064 0.96128 0.99964 0.88349 1.21401 1.00898 0.91649 0.99576 1.22347 0.94213 0.99892 1.04296 1.24931 0.91785 0.77072 0.81187 1.90353 1.66812 1.38349 1.38873 1.22007 1.01149 0.95665 0.95877 0.89127 1.21856 1.03101 1.00542 0.94816 1.20429 0.93729 0.92539 0.96901 1.22021 1.00084 1.02654 0.95628 1.21942 0.99259 1.00297 0.98129 0.94900 0.90137 0.96870 0.94996 0.87630 0.92456 0.90814 0.90425 0.88407 0.89669 0.91269 0.92788 0.90642 0.93466 0.90473 0.93071 0.90872 0.91775 0.93595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.90 9.22 37.16 0.34 -2.56 16 2 C 0.13 3.18 5.44 -4.04 -0.02 3.16 16 3 N -0.44 -10.19 2.43 -114.80 -0.28 -10.47 16 4 C -0.32 -7.25 8.07 -14.93 -0.12 -7.37 16 5 H 0.10 2.12 4.59 -52.49 -0.24 1.88 16 6 C 0.03 0.69 5.15 -17.47 -0.09 0.60 16 7 N -0.87 -20.58 7.34 55.50 0.41 -20.18 16 8 Si 0.92 18.05 29.56 -169.99 -5.02 13.02 16 9 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 10 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 11 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 12 C 0.46 10.26 4.95 -10.98 -0.05 10.20 16 13 O -0.61 -15.02 14.47 5.55 0.08 -14.94 16 14 C -0.09 -1.67 1.20 -91.60 -0.11 -1.78 16 15 H 0.10 1.73 4.03 -51.93 -0.21 1.52 16 16 C -0.10 -1.57 4.59 -26.64 -0.12 -1.69 16 17 C -0.17 -2.31 5.89 -27.48 -0.16 -2.47 16 18 C 0.37 5.62 5.10 -28.48 -0.15 5.48 16 19 O -0.47 -8.24 17.89 6.00 0.11 -8.14 16 20 C -0.13 -1.80 2.23 -91.37 -0.20 -2.00 16 21 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 22 C -0.15 -1.82 8.39 37.16 0.31 -1.51 16 23 C -0.04 -0.56 0.33 -154.19 -0.05 -0.61 16 24 C -0.15 -2.44 7.53 37.16 0.28 -2.16 16 25 C -0.14 -2.26 6.59 37.16 0.24 -2.01 16 26 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.08 1.97 6.05 -51.93 -0.31 1.66 16 28 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.03 0.77 7.31 -51.93 -0.38 0.39 16 30 H 0.11 2.61 6.02 -51.93 -0.31 2.30 16 31 H 0.26 6.05 8.31 -40.82 -0.34 5.71 16 32 H 0.07 1.20 8.14 -51.92 -0.42 0.78 16 33 H 0.08 1.34 6.04 -51.93 -0.31 1.03 16 34 H 0.10 1.15 7.81 -51.93 -0.41 0.75 16 35 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.07 0.87 5.97 -51.93 -0.31 0.56 16 37 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.91 6.55 -51.93 -0.34 0.57 16 39 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.08 1.47 6.46 -51.93 -0.34 1.13 16 41 H 0.05 0.85 5.60 -51.93 -0.29 0.56 16 42 H 0.07 1.20 5.18 -51.93 -0.27 0.93 16 43 H 0.06 1.21 7.30 -51.93 -0.38 0.83 16 44 H 0.04 0.64 8.14 -51.92 -0.42 0.22 16 LS Contribution 320.05 15.07 4.82 4.82 Total: -1.00 -26.52 320.05 -6.40 -32.92 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -6.62 Total: 7.68 kcal Atomic # 6 Polarization: -4.83 SS G_CDS: 0.10 Total: -4.73 kcal Atomic # 7 Polarization: -30.78 SS G_CDS: 0.13 Total: -30.65 kcal Atomic # 8 Polarization: -23.26 SS G_CDS: 0.19 Total: -23.07 kcal Atomic # 14 Polarization: 18.05 SS G_CDS: -5.02 Total: 13.02 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -26.52 -6.40 -32.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336348428.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.026 kcal (2) G-P(sol) polarization free energy of solvation -26.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds