Wall clock time and date at job start Tue Mar 31 2020 05:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46505 * 109.46964 * 2 1 4 4 C 1.37101 * 119.99734 * 263.32324 * 3 2 1 5 5 H 1.07999 * 119.99428 * 194.76831 * 4 3 2 6 6 C 1.38955 * 120.00031 * 14.77040 * 4 3 2 7 7 N 1.31406 * 119.99843 * 13.03287 * 6 4 3 8 8 Si 1.86796 * 119.99813 * 193.03233 * 6 4 3 9 9 H 1.48494 * 109.47095 * 89.99995 * 8 6 4 10 10 H 1.48499 * 109.46993 * 210.00334 * 8 6 4 11 11 H 1.48507 * 109.47071 * 330.00152 * 8 6 4 12 12 C 1.34775 * 119.99863 * 83.60681 * 3 2 1 13 13 O 1.21290 * 120.00210 * 5.08764 * 12 3 2 14 14 C 1.50704 * 119.99571 * 185.09579 * 12 3 2 15 15 H 1.08999 * 109.41137 * 334.91877 * 14 12 3 16 16 C 1.52956 * 109.40835 * 215.13547 * 14 12 3 17 17 C 1.53233 * 109.40525 * 176.29532 * 16 14 12 18 18 C 1.51270 * 108.53416 * 54.62387 * 17 16 14 19 19 O 1.20768 * 120.84607 * 128.67897 * 18 17 16 20 20 C 1.51262 * 118.30282 * 308.65375 * 18 17 16 21 21 H 1.08997 * 109.78397 * 291.53993 * 20 18 17 22 22 C 1.53001 * 109.62569 * 171.06265 * 20 18 17 23 23 C 1.52958 * 109.41669 * 94.78311 * 14 12 3 24 24 C 1.52996 * 109.47984 * 303.68054 * 23 14 12 25 25 C 1.52997 * 109.48086 * 63.72115 * 23 14 12 26 26 H 1.08998 * 109.47266 * 293.03840 * 1 2 3 27 27 H 1.09004 * 109.46872 * 53.03559 * 1 2 3 28 28 H 1.08997 * 109.47384 * 173.03362 * 1 2 3 29 29 H 1.09002 * 109.47021 * 240.00183 * 2 1 3 30 30 H 1.08999 * 109.46763 * 119.99996 * 2 1 3 31 31 H 0.97003 * 119.99787 * 180.02562 * 7 6 4 32 32 H 1.09003 * 109.48583 * 296.27019 * 16 14 12 33 33 H 1.09000 * 109.48786 * 56.31270 * 16 14 12 34 34 H 1.09003 * 109.62446 * 294.91298 * 17 16 14 35 35 H 1.09004 * 109.78729 * 174.43353 * 17 16 14 36 36 H 1.08998 * 109.47078 * 300.95335 * 22 20 18 37 37 H 1.09000 * 109.46941 * 60.95585 * 22 20 18 38 38 H 1.08999 * 109.47085 * 180.95699 * 22 20 18 39 39 H 1.09007 * 109.47420 * 64.10094 * 24 23 14 40 40 H 1.09001 * 109.47442 * 184.09842 * 24 23 14 41 41 H 1.09001 * 109.47553 * 304.10114 * 24 23 14 42 42 H 1.08997 * 109.47651 * 60.00389 * 25 23 14 43 43 H 1.09001 * 109.47041 * 180.02562 * 25 23 14 44 44 H 1.09000 * 109.47096 * 300.00036 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3769 1.9815 -1.1793 5 1 2.9529 2.8950 -1.1669 6 6 1.9993 1.4146 -2.3904 7 7 1.0948 0.4617 -2.4161 8 14 2.7774 2.0071 -3.9819 9 1 3.9924 1.2028 -4.2682 10 1 1.8070 1.8515 -5.0952 11 1 3.1513 3.4380 -3.8474 12 6 2.1204 2.0599 1.1599 13 8 1.8967 1.4996 2.2121 14 6 2.5123 3.5150 1.1495 15 1 3.0848 3.7296 0.2471 16 6 3.3705 3.8191 2.3786 17 6 3.8457 5.2747 2.3203 18 6 2.6358 6.1698 2.1679 19 8 2.4638 7.1095 2.9066 20 6 1.6473 5.8580 1.0662 21 1 2.1052 6.0470 0.0953 22 6 0.4043 6.7355 1.2276 23 6 1.2518 4.3813 1.1700 24 6 0.3570 4.0082 -0.0136 25 6 0.4929 4.1470 2.4777 26 1 -0.3634 0.4022 0.9457 27 1 -0.3633 0.6180 -0.8212 28 1 -0.3634 -1.0200 -0.1246 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 0.8314 0.0657 -3.2616 32 1 2.7797 3.6656 3.2816 33 1 4.2347 3.1549 2.3920 34 1 4.5103 5.4090 1.4667 35 1 4.3746 5.5273 3.2393 36 1 -0.0477 6.5494 2.2018 37 1 0.6885 7.7852 1.1533 38 1 -0.3133 6.4969 0.4426 39 1 0.0176 2.9784 0.0980 40 1 -0.5055 4.6740 -0.0411 41 1 0.9214 4.1063 -0.9409 42 1 1.1304 4.4135 3.3206 43 1 -0.4055 4.7641 2.4919 44 1 0.2128 3.0962 2.5519 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336348429.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:20 Heat of formation + Delta-G solvation = -76.636011 kcal Electronic energy + Delta-G solvation = -24735.764188 eV Core-core repulsion = 21460.199702 eV Total energy + Delta-G solvation = -3275.564485 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.67675 -38.69439 -36.64666 -35.03671 -33.20955 -31.51070 -30.79176 -29.65653 -26.99692 -26.79708 -25.18652 -24.79235 -22.74021 -20.92959 -20.12832 -19.01809 -17.93314 -16.57618 -16.28508 -15.59695 -15.33734 -15.20192 -14.50237 -14.35276 -14.14212 -13.31350 -13.15683 -13.06681 -12.87787 -12.46293 -12.28743 -12.17078 -11.94107 -11.64367 -11.55677 -11.40194 -11.30812 -11.24704 -11.02886 -10.91568 -10.86581 -10.69427 -10.53718 -10.36235 -10.17133 -10.07431 -9.82063 -9.62288 -9.04629 -8.89423 -8.25256 -7.74289 -6.34296 -3.93157 2.16786 3.05799 3.16242 3.17416 3.85476 4.02578 4.26018 4.68943 4.88313 4.97563 5.04522 5.16851 5.39195 5.41246 5.55892 5.59700 5.67434 5.76118 5.91846 5.98712 6.05368 6.12303 6.17667 6.22874 6.28495 6.33327 6.36445 6.50440 6.60250 6.62608 6.65258 6.71967 6.79488 6.86638 6.94889 7.05391 7.12588 7.31981 7.45561 7.70654 7.74705 7.79136 8.42267 9.05196 9.54138 9.93675 10.61020 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.018682 B = 0.007063 C = 0.006296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.417867 B = 3963.184953 C = 4446.386513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.134 3.866 3 N -0.438 5.438 4 C -0.324 4.324 5 H 0.098 0.902 6 C 0.034 3.966 7 N -0.864 5.864 8 Si 0.916 3.084 9 H -0.279 1.279 10 H -0.284 1.284 11 H -0.271 1.271 12 C 0.467 3.533 13 O -0.607 6.607 14 C -0.092 4.092 15 H 0.093 0.907 16 C -0.098 4.098 17 C -0.170 4.170 18 C 0.370 3.630 19 O -0.466 6.466 20 C -0.131 4.131 21 H 0.104 0.896 22 C -0.140 4.140 23 C -0.029 4.029 24 C -0.136 4.136 25 C -0.147 4.147 26 H 0.020 0.980 27 H 0.082 0.918 28 H 0.032 0.968 29 H 0.099 0.901 30 H 0.031 0.969 31 H 0.266 0.734 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.096 0.904 35 H 0.084 0.916 36 H 0.061 0.939 37 H 0.054 0.946 38 H 0.065 0.935 39 H 0.069 0.931 40 H 0.043 0.957 41 H 0.069 0.931 42 H 0.049 0.951 43 H 0.051 0.949 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.263 6.711 1.545 7.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.011 3.989 3 N -0.156 5.156 4 C -0.452 4.452 5 H 0.116 0.884 6 C -0.170 4.170 7 N -0.503 5.503 8 Si 0.743 3.257 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.195 1.195 12 C 0.255 3.745 13 O -0.494 6.494 14 C -0.113 4.113 15 H 0.111 0.889 16 C -0.136 4.136 17 C -0.208 4.208 18 C 0.247 3.753 19 O -0.340 6.340 20 C -0.150 4.150 21 H 0.121 0.879 22 C -0.197 4.197 23 C -0.030 4.030 24 C -0.193 4.193 25 C -0.204 4.204 26 H 0.040 0.960 27 H 0.101 0.899 28 H 0.052 0.948 29 H 0.117 0.883 30 H 0.050 0.950 31 H 0.077 0.923 32 H 0.096 0.904 33 H 0.090 0.910 34 H 0.114 0.886 35 H 0.103 0.897 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.062 0.938 41 H 0.088 0.912 42 H 0.068 0.932 43 H 0.070 0.930 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.952 6.773 2.260 7.203 hybrid contribution 0.449 0.134 -1.143 1.236 sum 1.401 6.907 1.116 7.135 Atomic orbital electron populations 1.21919 0.96990 1.00097 1.00162 1.21209 0.94198 0.83288 1.00161 1.43804 1.55101 1.11264 1.05382 1.19638 1.32596 1.10098 0.82824 0.88443 1.25190 0.95670 0.96942 0.99181 1.70118 1.27624 1.26006 1.26519 0.86092 0.78894 0.79107 0.81566 1.20499 1.20999 1.19549 1.19774 0.83085 0.87662 0.83970 1.90514 1.57294 1.70300 1.31302 1.21245 0.96364 0.94501 0.99202 0.88885 1.21418 1.00011 0.92786 0.99395 1.22354 0.97425 0.96842 1.04129 1.24941 0.86435 0.81759 0.82206 1.90340 1.74584 1.27557 1.41561 1.21940 0.96622 0.97141 0.99304 0.87854 1.21745 0.96712 0.98696 1.02521 1.20265 0.95096 0.90490 0.97150 1.21929 0.98180 1.02055 0.97178 1.22066 0.99300 1.03208 0.95866 0.96041 0.89918 0.94849 0.88300 0.95016 0.92289 0.90390 0.90994 0.88573 0.89727 0.92020 0.92667 0.91655 0.91154 0.93841 0.91200 0.93243 0.93019 0.90813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.98 9.49 37.16 0.35 -2.62 16 2 C 0.13 3.15 5.27 -4.04 -0.02 3.12 16 3 N -0.44 -10.10 2.19 -114.80 -0.25 -10.36 16 4 C -0.32 -7.31 7.25 -14.93 -0.11 -7.41 16 5 H 0.10 2.08 5.66 -52.49 -0.30 1.78 16 6 C 0.03 0.77 5.12 -17.47 -0.09 0.68 16 7 N -0.86 -20.39 8.20 55.50 0.45 -19.94 16 8 Si 0.92 18.11 29.57 -169.99 -5.03 13.09 16 9 H -0.28 -5.63 7.11 56.52 0.40 -5.22 16 10 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 11 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 12 C 0.47 10.29 4.91 -10.98 -0.05 10.23 16 13 O -0.61 -14.93 14.72 5.55 0.08 -14.85 16 14 C -0.09 -1.64 1.42 -91.81 -0.13 -1.77 16 15 H 0.09 1.64 5.71 -51.93 -0.30 1.34 16 16 C -0.10 -1.57 4.55 -26.63 -0.12 -1.69 16 17 C -0.17 -2.28 6.17 -27.48 -0.17 -2.45 16 18 C 0.37 5.55 5.60 -28.48 -0.16 5.39 16 19 O -0.47 -8.03 16.88 5.99 0.10 -7.93 16 20 C -0.13 -1.88 2.26 -91.38 -0.21 -2.08 16 21 H 0.10 1.36 8.14 -51.93 -0.42 0.93 16 22 C -0.14 -1.87 7.85 37.16 0.29 -1.58 16 23 C -0.03 -0.48 0.32 -154.41 -0.05 -0.53 16 24 C -0.14 -2.38 7.01 37.16 0.26 -2.12 16 25 C -0.15 -2.50 7.04 37.16 0.26 -2.24 16 26 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.08 1.97 6.50 -51.93 -0.34 1.63 16 28 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.10 2.42 5.87 -51.93 -0.30 2.11 16 30 H 0.03 0.75 7.55 -51.93 -0.39 0.36 16 31 H 0.27 6.09 8.31 -40.82 -0.34 5.75 16 32 H 0.08 1.35 6.03 -51.93 -0.31 1.03 16 33 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.06 0.86 6.36 -51.93 -0.33 0.53 16 37 H 0.05 0.71 8.06 -51.93 -0.42 0.29 16 38 H 0.06 0.81 6.53 -51.93 -0.34 0.47 16 39 H 0.07 1.45 6.93 -51.93 -0.36 1.09 16 40 H 0.04 0.67 6.43 -51.93 -0.33 0.33 16 41 H 0.07 1.26 7.14 -51.93 -0.37 0.89 16 42 H 0.05 0.83 5.61 -51.93 -0.29 0.54 16 43 H 0.05 0.79 6.36 -51.93 -0.33 0.46 16 44 H 0.07 1.44 6.55 -51.93 -0.34 1.10 16 LS Contribution 321.59 15.07 4.85 4.85 Total: -1.00 -26.14 321.59 -6.46 -32.60 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -6.73 Total: 7.61 kcal Atomic # 6 Polarization: -5.13 SS G_CDS: 0.06 Total: -5.07 kcal Atomic # 7 Polarization: -30.49 SS G_CDS: 0.20 Total: -30.29 kcal Atomic # 8 Polarization: -22.96 SS G_CDS: 0.18 Total: -22.78 kcal Atomic # 14 Polarization: 18.11 SS G_CDS: -5.03 Total: 13.09 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -26.14 -6.46 -32.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336348429.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.032 kcal (2) G-P(sol) polarization free energy of solvation -26.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds