Wall clock time and date at job start Tue Mar 31 2020 05:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46505 * 109.46964 * 2 1 4 4 C 1.37101 * 119.99734 * 263.32324 * 3 2 1 5 5 H 1.07999 * 119.99428 * 194.76831 * 4 3 2 6 6 C 1.38955 * 120.00031 * 14.77040 * 4 3 2 7 7 N 1.31406 * 119.99843 * 13.03287 * 6 4 3 8 8 Si 1.86796 * 119.99813 * 193.03233 * 6 4 3 9 9 H 1.48494 * 109.47095 * 89.99995 * 8 6 4 10 10 H 1.48499 * 109.46993 * 210.00334 * 8 6 4 11 11 H 1.48507 * 109.47071 * 330.00152 * 8 6 4 12 12 C 1.34775 * 119.99863 * 83.60681 * 3 2 1 13 13 O 1.21290 * 120.00210 * 5.08764 * 12 3 2 14 14 C 1.50704 * 119.99571 * 185.09579 * 12 3 2 15 15 H 1.08999 * 109.41137 * 334.91877 * 14 12 3 16 16 C 1.52956 * 109.40835 * 215.13547 * 14 12 3 17 17 C 1.53233 * 109.40525 * 176.29532 * 16 14 12 18 18 C 1.51270 * 108.53416 * 54.62387 * 17 16 14 19 19 O 1.20768 * 120.84607 * 128.67897 * 18 17 16 20 20 C 1.51262 * 118.30282 * 308.65375 * 18 17 16 21 21 H 1.08997 * 109.78397 * 291.53993 * 20 18 17 22 22 C 1.53001 * 109.62569 * 171.06265 * 20 18 17 23 23 C 1.52958 * 109.41669 * 94.78311 * 14 12 3 24 24 C 1.52996 * 109.47984 * 303.68054 * 23 14 12 25 25 C 1.52997 * 109.48086 * 63.72115 * 23 14 12 26 26 H 1.08998 * 109.47266 * 293.03840 * 1 2 3 27 27 H 1.09004 * 109.46872 * 53.03559 * 1 2 3 28 28 H 1.08997 * 109.47384 * 173.03362 * 1 2 3 29 29 H 1.09002 * 109.47021 * 240.00183 * 2 1 3 30 30 H 1.08999 * 109.46763 * 119.99996 * 2 1 3 31 31 H 0.97003 * 119.99787 * 180.02562 * 7 6 4 32 32 H 1.09003 * 109.48583 * 296.27019 * 16 14 12 33 33 H 1.09000 * 109.48786 * 56.31270 * 16 14 12 34 34 H 1.09003 * 109.62446 * 294.91298 * 17 16 14 35 35 H 1.09004 * 109.78729 * 174.43353 * 17 16 14 36 36 H 1.08998 * 109.47078 * 300.95335 * 22 20 18 37 37 H 1.09000 * 109.46941 * 60.95585 * 22 20 18 38 38 H 1.08999 * 109.47085 * 180.95699 * 22 20 18 39 39 H 1.09007 * 109.47420 * 64.10094 * 24 23 14 40 40 H 1.09001 * 109.47442 * 184.09842 * 24 23 14 41 41 H 1.09001 * 109.47553 * 304.10114 * 24 23 14 42 42 H 1.08997 * 109.47651 * 60.00389 * 25 23 14 43 43 H 1.09001 * 109.47041 * 180.02562 * 25 23 14 44 44 H 1.09000 * 109.47096 * 300.00036 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3769 1.9815 -1.1793 5 1 2.9529 2.8950 -1.1669 6 6 1.9993 1.4146 -2.3904 7 7 1.0948 0.4617 -2.4161 8 14 2.7774 2.0071 -3.9819 9 1 3.9924 1.2028 -4.2682 10 1 1.8070 1.8515 -5.0952 11 1 3.1513 3.4380 -3.8474 12 6 2.1204 2.0599 1.1599 13 8 1.8967 1.4996 2.2121 14 6 2.5123 3.5150 1.1495 15 1 3.0848 3.7296 0.2471 16 6 3.3705 3.8191 2.3786 17 6 3.8457 5.2747 2.3203 18 6 2.6358 6.1698 2.1679 19 8 2.4638 7.1095 2.9066 20 6 1.6473 5.8580 1.0662 21 1 2.1052 6.0470 0.0953 22 6 0.4043 6.7355 1.2276 23 6 1.2518 4.3813 1.1700 24 6 0.3570 4.0082 -0.0136 25 6 0.4929 4.1470 2.4777 26 1 -0.3634 0.4022 0.9457 27 1 -0.3633 0.6180 -0.8212 28 1 -0.3634 -1.0200 -0.1246 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 0.8314 0.0657 -3.2616 32 1 2.7797 3.6656 3.2816 33 1 4.2347 3.1549 2.3920 34 1 4.5103 5.4090 1.4667 35 1 4.3746 5.5273 3.2393 36 1 -0.0477 6.5494 2.2018 37 1 0.6885 7.7852 1.1533 38 1 -0.3133 6.4969 0.4426 39 1 0.0176 2.9784 0.0980 40 1 -0.5055 4.6740 -0.0411 41 1 0.9214 4.1063 -0.9409 42 1 1.1304 4.4135 3.3206 43 1 -0.4055 4.7641 2.4919 44 1 0.2128 3.0962 2.5519 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336348429.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:20 Heat of formation + Delta-G solvation = -89.111255 kcal Electronic energy + Delta-G solvation = -24736.305155 eV Core-core repulsion = 21460.199702 eV Total energy + Delta-G solvation = -3276.105453 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.03913 -40.23452 -38.09501 -36.81807 -34.46651 -33.29371 -32.24911 -31.25170 -28.39729 -28.18084 -26.60821 -26.33403 -24.38639 -22.39915 -21.48431 -20.69964 -19.28573 -18.16248 -17.95133 -16.86507 -16.64406 -16.54850 -16.08976 -15.94466 -15.61486 -14.88792 -14.76700 -14.39448 -14.25331 -14.16668 -13.70231 -13.46270 -13.42989 -13.09520 -12.92597 -12.81200 -12.80869 -12.75700 -12.58652 -12.37608 -12.28395 -12.15685 -12.11914 -11.91473 -11.64790 -11.55442 -11.40391 -11.09192 -10.69128 -10.25535 -10.00852 -9.56480 -8.09041 -5.72666 0.99236 1.49493 1.56893 1.64132 2.15633 2.38105 3.02539 3.16429 3.26053 3.68117 3.75212 3.86714 4.09523 4.22784 4.28401 4.34799 4.45021 4.48931 4.55867 4.62425 4.77942 4.81983 4.86157 4.90918 4.93218 4.98723 5.00778 5.04388 5.06275 5.13582 5.19645 5.20606 5.21015 5.34685 5.41158 5.52801 5.56551 5.60085 5.68132 5.88017 6.00059 6.54406 6.62270 7.28362 7.77652 8.17544 8.87088 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.018682 B = 0.007063 C = 0.006296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.417867 B = 3963.184953 C = 4446.386513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.136 3.864 3 N -0.448 5.448 4 C -0.331 4.331 5 H 0.113 0.887 6 C -0.004 4.004 7 N -0.887 5.887 8 Si 0.977 3.023 9 H -0.284 1.284 10 H -0.292 1.292 11 H -0.254 1.254 12 C 0.460 3.540 13 O -0.639 6.639 14 C -0.087 4.087 15 H 0.102 0.898 16 C -0.093 4.093 17 C -0.161 4.161 18 C 0.373 3.627 19 O -0.488 6.488 20 C -0.127 4.127 21 H 0.125 0.875 22 C -0.138 4.138 23 C -0.023 4.023 24 C -0.127 4.127 25 C -0.141 4.141 26 H 0.009 0.991 27 H 0.068 0.932 28 H 0.047 0.953 29 H 0.089 0.911 30 H 0.019 0.981 31 H 0.265 0.735 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.124 0.876 35 H 0.097 0.903 36 H 0.052 0.948 37 H 0.063 0.937 38 H 0.075 0.925 39 H 0.032 0.968 40 H 0.064 0.936 41 H 0.066 0.934 42 H 0.048 0.952 43 H 0.067 0.933 44 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.207 8.836 0.590 9.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.013 3.987 3 N -0.165 5.165 4 C -0.459 4.459 5 H 0.131 0.869 6 C -0.205 4.205 7 N -0.527 5.527 8 Si 0.802 3.198 9 H -0.210 1.210 10 H -0.218 1.218 11 H -0.178 1.178 12 C 0.250 3.750 13 O -0.528 6.528 14 C -0.108 4.108 15 H 0.120 0.880 16 C -0.131 4.131 17 C -0.199 4.199 18 C 0.251 3.749 19 O -0.364 6.364 20 C -0.146 4.146 21 H 0.143 0.857 22 C -0.195 4.195 23 C -0.024 4.024 24 C -0.184 4.184 25 C -0.198 4.198 26 H 0.028 0.972 27 H 0.087 0.913 28 H 0.066 0.934 29 H 0.107 0.893 30 H 0.037 0.963 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.090 0.910 34 H 0.142 0.858 35 H 0.115 0.885 36 H 0.071 0.929 37 H 0.082 0.918 38 H 0.094 0.906 39 H 0.051 0.949 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.067 0.933 43 H 0.086 0.914 44 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 1.903 8.908 1.306 9.202 hybrid contribution 0.115 -0.604 -0.806 1.014 sum 2.018 8.304 0.500 8.560 Atomic orbital electron populations 1.21721 0.96303 1.00525 0.98787 1.21106 0.94709 0.84047 0.98882 1.43987 1.55262 1.11090 1.06170 1.19959 1.32699 1.10608 0.82613 0.86938 1.25892 0.95853 0.97101 1.01653 1.70217 1.28529 1.26962 1.26962 0.85147 0.77418 0.79376 0.77818 1.21046 1.21807 1.17809 1.20511 0.82168 0.89267 0.83082 1.90487 1.58527 1.71442 1.32374 1.21258 0.97458 0.91564 1.00503 0.87989 1.21334 0.99378 0.94816 0.97591 1.22327 0.97258 0.94135 1.06131 1.25144 0.86719 0.81398 0.81670 1.90346 1.75087 1.28748 1.42218 1.21934 0.97223 0.95106 1.00295 0.85703 1.21740 0.96394 0.98952 1.02437 1.20189 0.94092 0.91914 0.96210 1.21812 0.99086 1.00206 0.97339 1.21983 1.00146 1.01271 0.96370 0.97151 0.91296 0.93446 0.89298 0.96268 0.92498 0.92153 0.90996 0.85764 0.88466 0.92880 0.91840 0.90581 0.94915 0.91765 0.91497 0.93318 0.91397 0.94144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.27 9.49 71.98 0.68 -4.59 16 2 C 0.14 6.53 5.27 86.38 0.46 6.99 16 3 N -0.45 -20.85 2.19 -635.52 -1.39 -22.24 16 4 C -0.33 -14.68 7.25 84.04 0.61 -14.07 16 5 H 0.11 4.55 5.66 -2.91 -0.02 4.53 16 6 C 0.00 -0.16 5.12 84.93 0.44 0.27 16 7 N -0.89 -42.03 8.20 21.66 0.18 -41.86 16 8 Si 0.98 36.01 29.57 68.60 2.03 38.04 16 9 H -0.28 -10.68 7.11 99.48 0.71 -9.97 16 10 H -0.29 -11.07 7.11 99.48 0.71 -10.37 16 11 H -0.25 -8.65 7.11 99.48 0.71 -7.95 16 12 C 0.46 20.43 4.91 87.66 0.43 20.86 16 13 O -0.64 -32.30 14.72 -3.06 -0.05 -32.35 16 14 C -0.09 -2.99 1.42 -11.57 -0.02 -3.01 16 15 H 0.10 3.33 5.71 -2.39 -0.01 3.32 16 16 C -0.09 -2.84 4.55 30.66 0.14 -2.70 16 17 C -0.16 -3.82 6.17 30.11 0.19 -3.64 16 18 C 0.37 10.08 5.60 29.46 0.17 10.24 16 19 O -0.49 -15.57 16.88 -1.47 -0.02 -15.59 16 20 C -0.13 -3.24 2.26 -11.28 -0.03 -3.27 16 21 H 0.13 2.73 8.14 -2.39 -0.02 2.71 16 22 C -0.14 -3.29 7.85 71.98 0.56 -2.73 16 23 C -0.02 -0.73 0.32 -52.12 -0.02 -0.74 16 24 C -0.13 -4.29 7.01 71.98 0.50 -3.78 16 25 C -0.14 -4.71 7.04 71.98 0.51 -4.21 16 26 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 27 H 0.07 3.35 6.50 -2.39 -0.02 3.34 16 28 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.09 4.45 5.87 -2.39 -0.01 4.43 16 30 H 0.02 0.94 7.55 -2.39 -0.02 0.92 16 31 H 0.26 12.15 8.31 -92.71 -0.77 11.38 16 32 H 0.06 2.05 6.03 -2.39 -0.01 2.04 16 33 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.12 2.32 8.14 -2.39 -0.02 2.30 16 35 H 0.10 2.13 8.14 -2.38 -0.02 2.11 16 36 H 0.05 1.35 6.36 -2.39 -0.02 1.33 16 37 H 0.06 1.43 8.06 -2.39 -0.02 1.41 16 38 H 0.08 1.63 6.53 -2.39 -0.02 1.62 16 39 H 0.03 1.34 6.93 -2.38 -0.02 1.32 16 40 H 0.06 1.85 6.43 -2.39 -0.02 1.83 16 41 H 0.07 2.28 7.14 -2.39 -0.02 2.26 16 42 H 0.05 1.61 5.61 -2.39 -0.01 1.60 16 43 H 0.07 2.01 6.36 -2.39 -0.02 1.99 16 44 H 0.04 1.61 6.55 -2.39 -0.02 1.60 16 Total: -1.00 -56.43 321.59 6.36 -50.07 By element: Atomic # 1 Polarization: 27.30 SS G_CDS: 1.00 Total: 28.30 kcal Atomic # 6 Polarization: -8.99 SS G_CDS: 4.62 Total: -4.37 kcal Atomic # 7 Polarization: -62.88 SS G_CDS: -1.21 Total: -64.10 kcal Atomic # 8 Polarization: -47.87 SS G_CDS: -0.07 Total: -47.94 kcal Atomic # 14 Polarization: 36.01 SS G_CDS: 2.03 Total: 38.04 kcal Total: -56.43 6.36 -50.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336348429.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.043 kcal (2) G-P(sol) polarization free energy of solvation -56.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds