Wall clock time and date at job start Tue Mar 31 2020 05:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47079 * 2 1 4 4 C 1.50698 * 109.47396 * 120.00030 * 2 1 3 5 5 H 1.07997 * 120.00212 * 95.23322 * 4 2 1 6 6 C 1.37875 * 119.99779 * 275.23488 * 4 2 1 7 7 N 1.31514 * 120.00168 * 355.13626 * 6 4 2 8 8 Si 1.86804 * 119.99754 * 175.13952 * 6 4 2 9 9 H 1.48492 * 109.47212 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.46956 * 239.99545 * 8 6 4 11 11 H 1.48500 * 109.46980 * 119.99930 * 8 6 4 12 12 N 1.46505 * 109.47291 * 240.00479 * 2 1 3 13 13 C 1.46500 * 119.99812 * 299.99463 * 12 2 1 14 14 C 1.34770 * 119.99982 * 119.99670 * 12 2 1 15 15 O 1.21282 * 120.00663 * 359.97438 * 14 12 2 16 16 C 1.50702 * 120.00000 * 179.97438 * 14 12 2 17 17 H 1.08998 * 109.73489 * 300.66666 * 16 14 12 18 18 C 1.53575 * 109.74269 * 179.97438 * 16 14 12 19 19 C 1.52954 * 109.43407 * 168.23446 * 18 16 14 20 20 C 1.52340 * 110.21125 * 78.33111 * 19 18 16 21 21 C 1.53451 * 109.56814 * 44.39398 * 20 19 18 22 22 C 1.53912 * 108.29409 * 245.81512 * 21 20 19 23 23 C 1.51199 * 107.17370 * 69.33138 * 22 21 20 24 24 O 1.20757 * 120.12861 * 108.37882 * 23 22 21 25 25 C 1.50233 * 119.73936 * 288.37118 * 23 22 21 26 26 H 1.08994 * 109.47425 * 295.09274 * 1 2 3 27 27 H 1.08997 * 109.47121 * 55.10315 * 1 2 3 28 28 H 1.09007 * 109.46864 * 175.09527 * 1 2 3 29 29 H 0.96995 * 120.00009 * 5.16441 * 7 6 4 30 30 H 1.08997 * 109.47087 * 89.99766 * 13 12 2 31 31 H 1.08993 * 109.47094 * 210.00405 * 13 12 2 32 32 H 1.08997 * 109.47138 * 330.00208 * 13 12 2 33 33 H 1.08989 * 109.48040 * 288.22577 * 18 16 14 34 34 H 1.09002 * 109.47287 * 48.24073 * 18 16 14 35 35 H 1.08998 * 109.34795 * 198.56220 * 19 18 16 36 36 H 1.09004 * 109.35115 * 318.10466 * 19 18 16 37 37 H 1.08997 * 109.45646 * 164.42553 * 20 19 18 38 38 H 1.09001 * 109.45723 * 284.36484 * 20 19 18 39 39 H 1.08997 * 109.70231 * 5.51460 * 21 20 19 40 40 H 1.09002 * 109.69931 * 126.11502 * 21 20 19 41 41 H 1.09002 * 109.91301 * 188.75272 * 22 21 20 42 42 H 1.09003 * 109.91199 * 309.90952 * 22 21 20 43 43 H 1.09000 * 109.40041 * 352.47487 * 25 23 22 44 44 H 1.08998 * 109.40087 * 232.73380 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.2928 -1.7573 1.1810 6 6 2.1595 -0.0237 2.4192 7 7 1.9343 1.2714 2.4579 8 14 2.6516 -0.9331 3.9750 9 1 2.8453 -2.3727 3.6667 10 1 1.5817 -0.7852 4.9942 11 1 3.9184 -0.3642 4.5011 12 7 2.0184 -0.6905 -1.1963 13 6 1.6645 -2.0931 -1.4281 14 6 2.7931 -0.0355 -2.0833 15 8 3.0857 1.1258 -1.8917 16 6 3.2960 -0.7459 -3.3136 17 1 3.8928 -1.6100 -3.0215 18 6 4.1496 0.2144 -4.1547 19 6 4.8916 -0.5762 -5.2335 20 6 3.9509 -0.9052 -6.3857 21 6 3.1217 0.3358 -6.7426 22 6 1.6469 0.0422 -6.4144 23 6 1.5301 -0.0281 -4.9085 24 8 0.9741 0.8555 -4.3018 25 6 2.1084 -1.2018 -4.1702 26 1 -0.3634 0.4358 0.9306 27 1 -0.3633 0.5879 -0.8428 28 1 -0.3633 -1.0240 -0.0879 29 1 1.6066 1.7305 1.6688 30 1 0.7377 -2.1444 -1.9994 31 1 2.4630 -2.5817 -1.9864 32 1 1.5296 -2.5968 -0.4710 33 1 3.5048 0.9558 -4.6263 34 1 4.8716 0.7174 -3.5113 35 1 5.7260 0.0175 -5.6068 36 1 5.2740 -1.5022 -4.8040 37 1 4.5337 -1.2142 -7.2534 38 1 3.2837 -1.7148 -6.0898 39 1 3.4657 1.1884 -6.1571 40 1 3.2253 0.5536 -7.8056 41 1 1.0146 0.8425 -6.7989 42 1 1.3511 -0.9100 -6.8547 43 1 2.4454 -1.9503 -4.8873 44 1 1.3438 -1.6372 -3.5268 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336405579.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:54 Heat of formation + Delta-G solvation = -101.469353 kcal Electronic energy + Delta-G solvation = -23986.512724 eV Core-core repulsion = 20709.871384 eV Total energy + Delta-G solvation = -3276.641340 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.00477 -40.24687 -38.03422 -37.25647 -35.25071 -34.08445 -32.36773 -31.11190 -28.21500 -27.59292 -27.02924 -26.51251 -24.03547 -22.64978 -21.33113 -20.72061 -19.49240 -18.78460 -18.07798 -17.34771 -17.12871 -16.63377 -16.45918 -15.69200 -15.67740 -15.35326 -15.03040 -14.93045 -14.70397 -14.39183 -14.13890 -13.62519 -13.50806 -13.39728 -13.17281 -13.08897 -12.91223 -12.85816 -12.62723 -12.47197 -12.32178 -12.11184 -11.96518 -11.90598 -11.59191 -11.25933 -11.22942 -10.94003 -10.56806 -10.46655 -10.37904 -9.32515 -8.66507 -6.41885 0.97544 1.50883 1.61147 1.75983 1.82835 2.29684 2.56761 3.08135 3.17043 3.52362 3.70300 3.76167 3.92240 4.04718 4.13146 4.15651 4.25575 4.36762 4.41504 4.44128 4.51006 4.56458 4.60464 4.66548 4.67066 4.77059 4.83312 4.91793 4.98070 5.06527 5.09010 5.12598 5.16116 5.24364 5.29237 5.40140 5.45427 5.59450 5.73681 5.87643 6.18735 6.46433 6.60150 6.78177 7.36472 7.47299 8.68797 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.029739 B = 0.004795 C = 0.004601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.297222 B = 5837.785142 C = 6083.626108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.238 3.762 3 H 0.006 0.994 4 C -0.604 4.604 5 H 0.066 0.934 6 C -0.034 4.034 7 N -0.938 5.938 8 Si 1.127 2.873 9 H -0.260 1.260 10 H -0.278 1.278 11 H -0.287 1.287 12 N -0.597 5.597 13 C 0.074 3.926 14 C 0.494 3.506 15 O -0.612 6.612 16 C -0.084 4.084 17 H 0.136 0.864 18 C -0.117 4.117 19 C -0.112 4.112 20 C -0.128 4.128 21 C -0.123 4.123 22 C -0.162 4.162 23 C 0.351 3.649 24 O -0.510 6.510 25 C -0.180 4.180 26 H 0.035 0.965 27 H 0.019 0.981 28 H 0.067 0.933 29 H 0.252 0.748 30 H 0.066 0.934 31 H 0.100 0.900 32 H 0.069 0.931 33 H 0.055 0.945 34 H 0.040 0.960 35 H 0.068 0.932 36 H 0.087 0.913 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.048 0.952 40 H 0.096 0.904 41 H 0.076 0.924 42 H 0.137 0.863 43 H 0.157 0.843 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.945 -13.894 -21.555 25.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.136 3.864 3 H 0.024 0.976 4 C -0.643 4.643 5 H 0.084 0.916 6 C -0.232 4.232 7 N -0.575 5.575 8 Si 0.948 3.052 9 H -0.184 1.184 10 H -0.204 1.204 11 H -0.214 1.214 12 N -0.327 5.327 13 C -0.067 4.067 14 C 0.284 3.716 15 O -0.494 6.494 16 C -0.105 4.105 17 H 0.154 0.846 18 C -0.155 4.155 19 C -0.150 4.150 20 C -0.165 4.165 21 C -0.160 4.160 22 C -0.199 4.199 23 C 0.230 3.770 24 O -0.387 6.387 25 C -0.217 4.217 26 H 0.054 0.946 27 H 0.038 0.962 28 H 0.086 0.914 29 H 0.062 0.938 30 H 0.084 0.916 31 H 0.118 0.882 32 H 0.088 0.912 33 H 0.074 0.926 34 H 0.059 0.941 35 H 0.087 0.913 36 H 0.106 0.894 37 H 0.111 0.889 38 H 0.111 0.889 39 H 0.067 0.933 40 H 0.115 0.885 41 H 0.095 0.905 42 H 0.155 0.845 43 H 0.175 0.825 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 3.144 -12.648 -19.549 23.495 hybrid contribution -0.666 0.983 -0.936 1.512 sum 2.477 -11.665 -20.485 23.704 Atomic orbital electron populations 1.21923 0.97599 1.00703 0.98299 1.18718 0.91137 0.92927 0.83660 0.97609 1.22432 1.48012 0.98618 0.95213 0.91595 1.27472 0.94203 0.95807 1.05707 1.70836 1.44106 1.09699 1.32845 0.82844 0.76501 0.74690 0.71212 1.18372 1.20379 1.21378 1.48141 1.49227 1.13315 1.22042 1.22044 1.01312 0.80609 1.02762 1.21551 0.78070 0.86708 0.85306 1.90601 1.60328 1.20252 1.78218 1.21469 0.97711 1.00317 0.91017 0.84616 1.21891 0.98598 0.97598 0.97391 1.21498 0.98115 1.00582 0.94772 1.21968 0.98536 0.97446 0.98517 1.21990 0.91974 0.99156 1.02895 1.22656 0.99672 1.06177 0.91418 1.25430 0.72788 0.85030 0.93753 1.90510 1.35688 1.39692 1.72786 1.22793 0.98404 0.99288 1.01227 0.94563 0.96198 0.91446 0.93774 0.91594 0.88199 0.91205 0.92622 0.94117 0.91330 0.89446 0.88888 0.88893 0.93334 0.88512 0.90501 0.84548 0.82530 0.87948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.32 9.25 71.98 0.67 -5.66 16 2 C 0.24 13.20 2.36 44.24 0.10 13.31 16 3 H 0.01 0.40 5.43 -2.38 -0.01 0.38 16 4 C -0.60 -34.25 8.13 25.60 0.21 -34.04 16 5 H 0.07 3.51 6.66 -2.91 -0.02 3.49 16 6 C -0.03 -2.00 5.45 84.65 0.46 -1.54 16 7 N -0.94 -61.11 13.63 21.45 0.29 -60.82 16 8 Si 1.13 50.91 29.91 68.60 2.05 52.96 16 9 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 10 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 11 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 12 N -0.60 -26.82 2.75 -826.81 -2.28 -29.10 16 13 C 0.07 2.31 7.79 127.77 0.99 3.31 16 14 C 0.49 22.28 6.29 87.66 0.55 22.83 16 15 O -0.61 -35.28 15.13 -3.04 -0.05 -35.32 16 16 C -0.08 -2.39 1.73 -11.22 -0.02 -2.41 16 17 H 0.14 2.93 7.12 -2.39 -0.02 2.92 16 18 C -0.12 -3.25 4.22 30.77 0.13 -3.12 16 19 C -0.11 -1.74 5.62 30.36 0.17 -1.57 16 20 C -0.13 -1.26 5.44 30.53 0.17 -1.10 16 21 C -0.12 -1.74 5.60 31.05 0.17 -1.57 16 22 C -0.16 -2.60 5.83 30.31 0.18 -2.42 16 23 C 0.35 9.35 4.29 29.11 0.12 9.48 16 24 O -0.51 -20.73 17.09 -1.44 -0.02 -20.75 16 25 C -0.18 -3.78 4.43 29.83 0.13 -3.65 16 26 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.02 0.95 8.14 -2.39 -0.02 0.94 16 28 H 0.07 2.91 7.51 -2.38 -0.02 2.89 16 29 H 0.25 17.24 6.66 -92.71 -0.62 16.62 16 30 H 0.07 1.75 6.78 -2.39 -0.02 1.73 16 31 H 0.10 2.21 6.17 -2.39 -0.01 2.19 16 32 H 0.07 2.32 6.63 -2.39 -0.02 2.30 16 33 H 0.06 1.77 3.82 -2.39 -0.01 1.76 16 34 H 0.04 1.40 7.72 -2.39 -0.02 1.38 16 35 H 0.07 1.03 8.14 -2.39 -0.02 1.02 16 36 H 0.09 1.04 7.83 -2.38 -0.02 1.03 16 37 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.09 0.58 4.50 -2.39 -0.01 0.57 16 39 H 0.05 1.02 5.56 -2.39 -0.01 1.01 16 40 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.14 1.05 7.97 -2.39 -0.02 1.03 16 43 H 0.16 1.48 5.20 -2.39 -0.01 1.47 16 44 H 0.10 2.26 4.69 -2.39 -0.01 2.25 16 Total: -1.00 -90.04 325.36 5.20 -84.84 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: 1.16 Total: 16.35 kcal Atomic # 6 Polarization: -12.20 SS G_CDS: 4.04 Total: -8.16 kcal Atomic # 7 Polarization: -87.93 SS G_CDS: -1.98 Total: -89.91 kcal Atomic # 8 Polarization: -56.00 SS G_CDS: -0.07 Total: -56.07 kcal Atomic # 14 Polarization: 50.91 SS G_CDS: 2.05 Total: 52.96 kcal Total: -90.04 5.20 -84.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336405579.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.633 kcal (2) G-P(sol) polarization free energy of solvation -90.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds