Wall clock time and date at job start Tue Mar 31 2020 05:24:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.47627 * 2 1 4 4 C 1.50701 * 109.46964 * 119.99847 * 2 1 3 5 5 H 1.07999 * 119.99990 * 94.02523 * 4 2 1 6 6 C 1.37885 * 120.00113 * 274.01922 * 4 2 1 7 7 N 1.31509 * 119.99988 * 174.49603 * 6 4 2 8 8 Si 1.86794 * 119.99856 * 354.50499 * 6 4 2 9 9 H 1.48502 * 109.47232 * 275.14754 * 8 6 4 10 10 H 1.48502 * 109.47544 * 35.14489 * 8 6 4 11 11 H 1.48497 * 109.47534 * 155.14692 * 8 6 4 12 12 N 1.46497 * 109.47279 * 239.99743 * 2 1 3 13 13 C 1.46503 * 119.99953 * 305.98134 * 12 2 1 14 14 C 1.34771 * 120.00139 * 125.98075 * 12 2 1 15 15 O 1.21285 * 120.00269 * 185.30316 * 14 12 2 16 16 C 1.50699 * 119.99871 * 5.30629 * 14 12 2 17 17 H 1.09005 * 109.73895 * 51.52773 * 16 14 12 18 18 C 1.53577 * 109.73960 * 172.23550 * 16 14 12 19 19 C 1.52950 * 109.42215 * 191.76224 * 18 16 14 20 20 C 1.52336 * 110.22083 * 281.66960 * 19 18 16 21 21 C 1.53451 * 109.56160 * 315.59685 * 20 19 18 22 22 C 1.53909 * 108.28724 * 114.17992 * 21 20 19 23 23 C 1.51209 * 107.17397 * 290.68287 * 22 21 20 24 24 O 1.20760 * 120.12695 * 251.60376 * 23 22 21 25 25 C 1.50232 * 119.73957 * 71.62560 * 23 22 21 26 26 H 1.09000 * 109.47508 * 175.37415 * 1 2 3 27 27 H 1.09010 * 109.46923 * 295.37352 * 1 2 3 28 28 H 1.09001 * 109.47505 * 55.37057 * 1 2 3 29 29 H 0.97001 * 119.99753 * 180.02562 * 7 6 4 30 30 H 1.09001 * 109.46814 * 95.12951 * 13 12 2 31 31 H 1.08999 * 109.47065 * 215.13207 * 13 12 2 32 32 H 1.08997 * 109.47151 * 335.13477 * 13 12 2 33 33 H 1.09002 * 109.48392 * 311.74641 * 18 16 14 34 34 H 1.09002 * 109.48108 * 71.78136 * 18 16 14 35 35 H 1.09003 * 109.35000 * 161.43821 * 19 18 16 36 36 H 1.09003 * 109.22195 * 41.81955 * 19 18 16 37 37 H 1.08996 * 109.46012 * 195.56947 * 20 19 18 38 38 H 1.09000 * 109.44016 * 75.61588 * 20 19 18 39 39 H 1.09001 * 109.69934 * 354.48261 * 21 20 19 40 40 H 1.09001 * 109.73340 * 233.89744 * 21 20 19 41 41 H 1.09003 * 109.91323 * 171.26572 * 22 21 20 42 42 H 1.09004 * 109.91273 * 50.09926 * 22 21 20 43 43 H 1.09009 * 109.39825 * 127.25857 * 25 23 22 44 44 H 1.08997 * 109.40630 * 7.51862 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.2741 -1.7620 1.1860 6 6 2.1831 -0.0177 2.4132 7 7 2.5170 -0.6581 3.5122 8 14 1.9130 1.8301 2.4542 9 1 3.1635 2.5223 2.0511 10 1 0.8219 2.1920 1.5142 11 1 1.5390 2.2453 3.8301 12 7 2.0183 -0.6906 -1.1961 13 6 1.5597 -2.0493 -1.4960 14 6 2.8894 -0.0761 -2.0206 15 8 3.2197 -0.6080 -3.0594 16 6 3.4533 1.2719 -1.6518 17 1 3.8636 1.2357 -0.6426 18 6 4.5556 1.6630 -2.6471 19 6 5.3188 2.8749 -2.1103 20 6 4.5175 4.1487 -2.3465 21 6 3.9466 4.1399 -3.7709 22 6 2.4125 4.0604 -3.6757 23 6 2.0681 2.6820 -3.1581 24 8 1.5693 1.8652 -3.8945 25 6 2.3485 2.3330 -1.7241 26 1 -0.3634 -1.0243 -0.0829 27 1 -0.3633 0.4404 0.9286 28 1 -0.3634 0.5840 -0.8456 29 1 2.6228 -0.1708 4.3443 30 1 0.7171 -2.0044 -2.1859 31 1 2.3726 -2.6149 -1.9515 32 1 1.2482 -2.5395 -0.5736 33 1 5.2437 0.8273 -2.7744 34 1 4.1057 1.9133 -3.6079 35 1 6.2788 2.9522 -2.6209 36 1 5.4879 2.7477 -1.0410 37 1 5.1672 5.0149 -2.2212 38 1 3.6997 4.2014 -1.6279 39 1 4.3265 3.2743 -4.3136 40 1 4.2357 5.0543 -4.2889 41 1 1.9713 4.2078 -4.6615 42 1 2.0435 4.8191 -2.9855 43 1 1.4413 1.9431 -1.2623 44 1 2.6696 3.2271 -1.1898 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336405580.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:58 Heat of formation + Delta-G solvation = -71.599737 kcal Electronic energy + Delta-G solvation = -24496.274413 eV Core-core repulsion = 21220.928317 eV Total energy + Delta-G solvation = -3275.346096 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.74482 -38.72012 -36.83407 -35.68198 -33.22317 -32.55520 -31.25328 -30.00771 -27.05273 -26.99866 -25.32936 -24.84033 -22.31055 -21.25479 -20.39289 -19.26310 -17.92990 -17.20055 -16.59132 -16.08797 -15.53901 -15.32517 -15.08146 -14.63403 -14.19359 -13.97132 -13.82709 -13.56639 -13.30930 -12.79867 -12.65314 -12.40802 -12.24245 -11.92236 -11.83793 -11.72361 -11.55746 -11.34833 -11.28392 -11.13067 -10.98616 -10.77892 -10.60678 -10.47136 -10.28799 -10.24161 -10.01822 -9.50528 -9.24310 -8.96895 -8.69107 -7.64759 -6.27816 -4.29180 2.11909 3.07604 3.15146 3.19786 3.40658 3.86820 4.12870 4.19446 4.64215 4.73750 4.79159 4.96956 4.99948 5.05704 5.13328 5.18850 5.30890 5.44772 5.50805 5.69109 5.72604 5.75603 5.87932 5.90613 5.93569 6.02539 6.07500 6.16378 6.17422 6.20039 6.31897 6.35741 6.38578 6.44691 6.50067 6.52446 6.70008 6.93793 7.35396 7.56704 7.68351 8.08999 8.48518 8.77889 8.98698 9.32499 10.85019 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.016878 B = 0.007641 C = 0.006512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.559664 B = 3663.647058 C = 4298.738460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.218 3.782 3 H 0.055 0.945 4 C -0.529 4.529 5 H 0.080 0.920 6 C 0.079 3.921 7 N -0.888 5.888 8 Si 0.858 3.142 9 H -0.269 1.269 10 H -0.259 1.259 11 H -0.283 1.283 12 N -0.588 5.588 13 C 0.097 3.903 14 C 0.520 3.480 15 O -0.560 6.560 16 C -0.095 4.095 17 H 0.111 0.889 18 C -0.115 4.115 19 C -0.123 4.123 20 C -0.137 4.137 21 C -0.121 4.121 22 C -0.169 4.169 23 C 0.360 3.640 24 O -0.443 6.443 25 C -0.185 4.185 26 H 0.054 0.946 27 H 0.059 0.941 28 H 0.027 0.973 29 H 0.267 0.733 30 H 0.040 0.960 31 H 0.058 0.942 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.071 0.929 41 H 0.085 0.915 42 H 0.094 0.906 43 H 0.107 0.893 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.656 11.519 -9.013 14.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.116 3.884 3 H 0.072 0.928 4 C -0.567 4.567 5 H 0.098 0.902 6 C -0.125 4.125 7 N -0.525 5.525 8 Si 0.684 3.316 9 H -0.194 1.194 10 H -0.184 1.184 11 H -0.209 1.209 12 N -0.318 5.318 13 C -0.046 4.046 14 C 0.307 3.693 15 O -0.440 6.440 16 C -0.116 4.116 17 H 0.129 0.871 18 C -0.152 4.152 19 C -0.161 4.161 20 C -0.174 4.174 21 C -0.158 4.158 22 C -0.207 4.207 23 C 0.234 3.766 24 O -0.315 6.315 25 C -0.222 4.222 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.046 0.954 29 H 0.077 0.923 30 H 0.058 0.942 31 H 0.077 0.923 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.094 0.906 39 H 0.098 0.902 40 H 0.090 0.910 41 H 0.104 0.896 42 H 0.112 0.888 43 H 0.125 0.875 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 1.576 10.794 -9.718 14.610 hybrid contribution -0.194 1.009 0.578 1.179 sum 1.382 11.803 -9.140 14.992 Atomic orbital electron populations 1.22340 0.98210 1.01113 0.99664 1.19515 0.91355 0.93667 0.83833 0.92772 1.21200 1.44907 0.98562 0.92081 0.90163 1.24924 0.94240 0.97997 0.95355 1.69878 1.46820 1.36088 0.99692 0.87181 0.79578 0.86603 0.78259 1.19432 1.18365 1.20876 1.48012 1.43503 1.15482 1.24851 1.21390 0.98810 0.83724 1.00686 1.20180 0.79039 0.86780 0.83259 1.90593 1.61460 1.67375 1.24547 1.21398 0.95556 0.92130 1.02509 0.87081 1.21876 0.97133 0.98074 0.98152 1.21540 0.98572 0.94062 1.01883 1.21971 1.00522 0.98193 0.96671 1.21962 0.92787 1.03046 0.98028 1.22602 0.98301 0.96702 1.03140 1.24526 0.73317 0.88991 0.89796 1.90459 1.31647 1.50699 1.58683 1.22699 1.01689 1.01132 0.96683 0.92741 0.92211 0.95432 0.92292 0.94172 0.92303 0.90530 0.90637 0.90636 0.91668 0.91218 0.91638 0.90618 0.90202 0.91018 0.89592 0.88807 0.87515 0.88196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.12 8.67 37.15 0.32 -2.80 16 2 C 0.22 4.77 1.18 -69.09 -0.08 4.69 16 3 H 0.05 1.14 1.87 -51.93 -0.10 1.04 16 4 C -0.53 -13.62 8.70 -34.44 -0.30 -13.92 16 5 H 0.08 2.30 7.39 -52.49 -0.39 1.91 16 6 C 0.08 2.06 5.47 -17.82 -0.10 1.97 16 7 N -0.89 -25.21 13.96 55.43 0.77 -24.44 16 8 Si 0.86 18.78 26.25 -169.99 -4.46 14.31 16 9 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 10 H -0.26 -5.23 6.23 56.52 0.35 -4.88 16 11 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 12 N -0.59 -12.70 2.75 -175.26 -0.48 -13.18 16 13 C 0.10 1.93 9.09 59.85 0.54 2.48 16 14 C 0.52 11.11 6.19 -10.99 -0.07 11.04 16 15 O -0.56 -13.23 15.64 5.55 0.09 -13.14 16 16 C -0.09 -1.67 1.69 -91.29 -0.15 -1.82 16 17 H 0.11 2.00 7.45 -51.93 -0.39 1.61 16 18 C -0.11 -1.74 4.16 -26.46 -0.11 -1.85 16 19 C -0.12 -1.42 5.62 -27.10 -0.15 -1.58 16 20 C -0.14 -1.34 5.44 -26.84 -0.15 -1.49 16 21 C -0.12 -1.18 5.60 -26.02 -0.15 -1.33 16 22 C -0.17 -1.83 5.83 -27.16 -0.16 -1.99 16 23 C 0.36 5.48 4.29 -29.01 -0.12 5.36 16 24 O -0.44 -8.61 17.09 6.00 0.10 -8.51 16 25 C -0.18 -2.88 4.12 -27.93 -0.12 -3.00 16 26 H 0.05 1.06 7.20 -51.93 -0.37 0.69 16 27 H 0.06 1.20 6.89 -51.92 -0.36 0.84 16 28 H 0.03 0.50 7.87 -51.93 -0.41 0.10 16 29 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 30 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.06 1.16 7.66 -51.93 -0.40 0.77 16 32 H 0.08 1.50 6.91 -51.93 -0.36 1.14 16 33 H 0.07 1.22 7.85 -51.93 -0.41 0.82 16 34 H 0.08 1.18 3.82 -51.93 -0.20 0.98 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.07 0.82 7.82 -51.93 -0.41 0.42 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.08 0.75 4.49 -51.93 -0.23 0.52 16 39 H 0.08 0.90 5.56 -51.93 -0.29 0.61 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.09 0.80 7.97 -51.93 -0.41 0.39 16 43 H 0.11 1.85 5.16 -51.92 -0.27 1.58 16 44 H 0.10 1.26 5.20 -51.93 -0.27 0.99 16 LS Contribution 322.35 15.07 4.86 4.86 Total: -1.00 -31.38 322.35 -6.46 -37.85 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -6.55 Total: 6.47 kcal Atomic # 6 Polarization: -3.44 SS G_CDS: -0.79 Total: -4.23 kcal Atomic # 7 Polarization: -37.91 SS G_CDS: 0.29 Total: -37.62 kcal Atomic # 8 Polarization: -21.84 SS G_CDS: 0.19 Total: -21.65 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -4.46 Total: 14.31 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.38 -6.46 -37.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336405580.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.751 kcal (2) G-P(sol) polarization free energy of solvation -31.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds