Wall clock time and date at job start Tue Mar 31 2020 05:24:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.47627 * 2 1 4 4 C 1.50701 * 109.46964 * 119.99847 * 2 1 3 5 5 H 1.07999 * 119.99990 * 94.02523 * 4 2 1 6 6 C 1.37885 * 120.00113 * 274.01922 * 4 2 1 7 7 N 1.31509 * 119.99988 * 174.49603 * 6 4 2 8 8 Si 1.86794 * 119.99856 * 354.50499 * 6 4 2 9 9 H 1.48502 * 109.47232 * 275.14754 * 8 6 4 10 10 H 1.48502 * 109.47544 * 35.14489 * 8 6 4 11 11 H 1.48497 * 109.47534 * 155.14692 * 8 6 4 12 12 N 1.46497 * 109.47279 * 239.99743 * 2 1 3 13 13 C 1.46503 * 119.99953 * 305.98134 * 12 2 1 14 14 C 1.34771 * 120.00139 * 125.98075 * 12 2 1 15 15 O 1.21285 * 120.00269 * 185.30316 * 14 12 2 16 16 C 1.50699 * 119.99871 * 5.30629 * 14 12 2 17 17 H 1.09005 * 109.73895 * 51.52773 * 16 14 12 18 18 C 1.53577 * 109.73960 * 172.23550 * 16 14 12 19 19 C 1.52950 * 109.42215 * 191.76224 * 18 16 14 20 20 C 1.52336 * 110.22083 * 281.66960 * 19 18 16 21 21 C 1.53451 * 109.56160 * 315.59685 * 20 19 18 22 22 C 1.53909 * 108.28724 * 114.17992 * 21 20 19 23 23 C 1.51209 * 107.17397 * 290.68287 * 22 21 20 24 24 O 1.20760 * 120.12695 * 251.60376 * 23 22 21 25 25 C 1.50232 * 119.73957 * 71.62560 * 23 22 21 26 26 H 1.09000 * 109.47508 * 175.37415 * 1 2 3 27 27 H 1.09010 * 109.46923 * 295.37352 * 1 2 3 28 28 H 1.09001 * 109.47505 * 55.37057 * 1 2 3 29 29 H 0.97001 * 119.99753 * 180.02562 * 7 6 4 30 30 H 1.09001 * 109.46814 * 95.12951 * 13 12 2 31 31 H 1.08999 * 109.47065 * 215.13207 * 13 12 2 32 32 H 1.08997 * 109.47151 * 335.13477 * 13 12 2 33 33 H 1.09002 * 109.48392 * 311.74641 * 18 16 14 34 34 H 1.09002 * 109.48108 * 71.78136 * 18 16 14 35 35 H 1.09003 * 109.35000 * 161.43821 * 19 18 16 36 36 H 1.09003 * 109.22195 * 41.81955 * 19 18 16 37 37 H 1.08996 * 109.46012 * 195.56947 * 20 19 18 38 38 H 1.09000 * 109.44016 * 75.61588 * 20 19 18 39 39 H 1.09001 * 109.69934 * 354.48261 * 21 20 19 40 40 H 1.09001 * 109.73340 * 233.89744 * 21 20 19 41 41 H 1.09003 * 109.91323 * 171.26572 * 22 21 20 42 42 H 1.09004 * 109.91273 * 50.09926 * 22 21 20 43 43 H 1.09009 * 109.39825 * 127.25857 * 25 23 22 44 44 H 1.08997 * 109.40630 * 7.51862 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.2741 -1.7620 1.1860 6 6 2.1831 -0.0177 2.4132 7 7 2.5170 -0.6581 3.5122 8 14 1.9130 1.8301 2.4542 9 1 3.1635 2.5223 2.0511 10 1 0.8219 2.1920 1.5142 11 1 1.5390 2.2453 3.8301 12 7 2.0183 -0.6906 -1.1961 13 6 1.5597 -2.0493 -1.4960 14 6 2.8894 -0.0761 -2.0206 15 8 3.2197 -0.6080 -3.0594 16 6 3.4533 1.2719 -1.6518 17 1 3.8636 1.2357 -0.6426 18 6 4.5556 1.6630 -2.6471 19 6 5.3188 2.8749 -2.1103 20 6 4.5175 4.1487 -2.3465 21 6 3.9466 4.1399 -3.7709 22 6 2.4125 4.0604 -3.6757 23 6 2.0681 2.6820 -3.1581 24 8 1.5693 1.8652 -3.8945 25 6 2.3485 2.3330 -1.7241 26 1 -0.3634 -1.0243 -0.0829 27 1 -0.3633 0.4404 0.9286 28 1 -0.3634 0.5840 -0.8456 29 1 2.6228 -0.1708 4.3443 30 1 0.7171 -2.0044 -2.1859 31 1 2.3726 -2.6149 -1.9515 32 1 1.2482 -2.5395 -0.5736 33 1 5.2437 0.8273 -2.7744 34 1 4.1057 1.9133 -3.6079 35 1 6.2788 2.9522 -2.6209 36 1 5.4879 2.7477 -1.0410 37 1 5.1672 5.0149 -2.2212 38 1 3.6997 4.2014 -1.6279 39 1 4.3265 3.2743 -4.3136 40 1 4.2357 5.0543 -4.2889 41 1 1.9713 4.2078 -4.6615 42 1 2.0435 4.8191 -2.9855 43 1 1.4413 1.9431 -1.2623 44 1 2.6696 3.2271 -1.1898 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336405580.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:57 Heat of formation + Delta-G solvation = -91.629711 kcal Electronic energy + Delta-G solvation = -24497.142978 eV Core-core repulsion = 21220.928317 eV Total energy + Delta-G solvation = -3276.214661 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.05060 -40.23347 -37.96232 -37.44141 -34.52899 -34.34056 -32.32526 -31.78256 -28.54030 -28.06138 -27.22390 -26.02222 -23.60575 -22.80508 -21.39907 -20.55770 -19.40085 -19.06525 -18.09419 -17.29201 -17.05084 -16.64388 -16.41406 -16.20321 -15.48681 -15.39965 -15.04279 -14.74415 -14.58286 -14.46176 -14.13774 -14.03053 -13.49436 -13.41449 -13.21204 -13.01623 -12.89855 -12.82398 -12.67697 -12.56169 -12.35318 -12.11682 -11.96222 -11.76306 -11.59136 -11.38512 -11.28110 -11.22633 -10.76534 -10.51990 -10.36588 -9.41899 -8.29527 -6.37964 0.95416 1.37810 1.40688 1.50552 1.75441 2.26485 2.35603 3.01626 3.09130 3.50557 3.68029 3.76969 3.92251 4.02590 4.12421 4.17314 4.23011 4.33529 4.39518 4.46723 4.52804 4.54301 4.60652 4.68855 4.72227 4.74772 4.83121 4.87296 4.93811 5.00210 5.04467 5.07397 5.13532 5.26871 5.29041 5.39524 5.44736 5.50771 5.58666 5.80736 6.12171 6.56132 6.65179 6.72088 7.24090 7.33798 8.86704 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.016878 B = 0.007641 C = 0.006512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.559664 B = 3663.647058 C = 4298.738460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.224 3.776 3 H 0.073 0.927 4 C -0.534 4.534 5 H 0.032 0.968 6 C 0.022 3.978 7 N -0.941 5.941 8 Si 0.916 3.084 9 H -0.243 1.243 10 H -0.227 1.227 11 H -0.288 1.288 12 N -0.598 5.598 13 C 0.097 3.903 14 C 0.509 3.491 15 O -0.590 6.590 16 C -0.096 4.096 17 H 0.107 0.893 18 C -0.110 4.110 19 C -0.119 4.119 20 C -0.134 4.134 21 C -0.119 4.119 22 C -0.161 4.161 23 C 0.361 3.639 24 O -0.495 6.495 25 C -0.190 4.190 26 H 0.051 0.949 27 H 0.062 0.938 28 H 0.047 0.953 29 H 0.268 0.732 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.072 0.928 33 H 0.052 0.948 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.069 0.931 37 H 0.092 0.908 38 H 0.079 0.921 39 H 0.059 0.941 40 H 0.101 0.899 41 H 0.089 0.911 42 H 0.128 0.872 43 H 0.091 0.909 44 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.636 15.916 -9.606 18.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.122 3.878 3 H 0.091 0.909 4 C -0.572 4.572 5 H 0.050 0.950 6 C -0.177 4.177 7 N -0.580 5.580 8 Si 0.737 3.263 9 H -0.167 1.167 10 H -0.150 1.150 11 H -0.214 1.214 12 N -0.328 5.328 13 C -0.046 4.046 14 C 0.298 3.702 15 O -0.472 6.472 16 C -0.117 4.117 17 H 0.125 0.875 18 C -0.148 4.148 19 C -0.156 4.156 20 C -0.171 4.171 21 C -0.156 4.156 22 C -0.199 4.199 23 C 0.239 3.761 24 O -0.371 6.371 25 C -0.227 4.227 26 H 0.070 0.930 27 H 0.081 0.919 28 H 0.066 0.934 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.090 0.910 33 H 0.071 0.929 34 H 0.088 0.912 35 H 0.098 0.902 36 H 0.088 0.912 37 H 0.111 0.889 38 H 0.098 0.902 39 H 0.078 0.922 40 H 0.120 0.880 41 H 0.108 0.892 42 H 0.146 0.854 43 H 0.109 0.891 44 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 1.558 15.198 -10.327 18.440 hybrid contribution -0.155 -0.539 0.747 0.935 sum 1.403 14.659 -9.579 17.567 Atomic orbital electron populations 1.22267 0.96641 1.01518 1.00645 1.19461 0.92403 0.93917 0.82043 0.90946 1.21328 1.44976 0.96784 0.94157 0.94954 1.25843 0.93640 1.03785 0.94448 1.70049 1.48754 1.38564 1.00600 0.86232 0.81655 0.79650 0.78813 1.16669 1.14956 1.21379 1.48156 1.43859 1.15924 1.24871 1.21393 0.99039 0.83491 1.00673 1.20991 0.78370 0.88132 0.82691 1.90563 1.62308 1.68510 1.25866 1.21457 0.96959 0.90541 1.02725 0.87495 1.21872 0.96218 0.99126 0.97583 1.21537 0.99064 0.93278 1.01764 1.21994 1.00816 0.97806 0.96496 1.21973 0.91700 1.03639 0.98260 1.22656 0.99129 0.94073 1.04030 1.25142 0.71406 0.90437 0.89114 1.90454 1.34219 1.52700 1.59708 1.22831 1.00152 1.01811 0.97876 0.93021 0.91859 0.93443 0.92269 0.92827 0.92905 0.90975 0.92929 0.91162 0.90204 0.91207 0.88897 0.90234 0.92229 0.88028 0.89195 0.85363 0.89061 0.84240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.93 8.67 71.98 0.62 -5.31 16 2 C 0.22 9.66 1.18 44.24 0.05 9.71 16 3 H 0.07 2.88 1.87 -2.38 0.00 2.87 16 4 C -0.53 -28.15 8.70 25.60 0.22 -27.93 16 5 H 0.03 1.96 7.39 -2.91 -0.02 1.94 16 6 C 0.02 1.15 5.47 84.66 0.46 1.62 16 7 N -0.94 -54.87 13.96 21.45 0.30 -54.57 16 8 Si 0.92 36.81 26.25 68.60 1.80 38.61 16 9 H -0.24 -8.77 7.11 99.48 0.71 -8.06 16 10 H -0.23 -7.91 6.23 99.48 0.62 -7.29 16 11 H -0.29 -11.83 7.11 99.48 0.71 -11.12 16 12 N -0.60 -26.23 2.75 -826.81 -2.28 -28.51 16 13 C 0.10 4.02 9.09 127.77 1.16 5.18 16 14 C 0.51 22.05 6.19 87.66 0.54 22.59 16 15 O -0.59 -28.78 15.64 -3.04 -0.05 -28.83 16 16 C -0.10 -3.26 1.69 -11.23 -0.02 -3.28 16 17 H 0.11 3.70 7.45 -2.38 -0.02 3.68 16 18 C -0.11 -3.23 4.16 30.77 0.13 -3.10 16 19 C -0.12 -2.37 5.62 30.36 0.17 -2.20 16 20 C -0.13 -1.94 5.44 30.53 0.17 -1.77 16 21 C -0.12 -1.79 5.60 31.05 0.17 -1.62 16 22 C -0.16 -2.78 5.83 30.32 0.18 -2.61 16 23 C 0.36 10.15 4.29 29.12 0.12 10.27 16 24 O -0.50 -18.95 17.09 -1.45 -0.02 -18.98 16 25 C -0.19 -5.36 4.12 29.82 0.12 -5.23 16 26 H 0.05 2.00 7.20 -2.39 -0.02 1.99 16 27 H 0.06 2.41 6.89 -2.38 -0.02 2.39 16 28 H 0.05 1.65 7.87 -2.39 -0.02 1.63 16 29 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 30 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.05 2.20 7.66 -2.39 -0.02 2.18 16 32 H 0.07 2.99 6.91 -2.39 -0.02 2.97 16 33 H 0.05 1.73 7.85 -2.39 -0.02 1.71 16 34 H 0.07 2.14 3.82 -2.39 -0.01 2.13 16 35 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.07 1.41 7.82 -2.39 -0.02 1.39 16 37 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.08 1.09 4.49 -2.39 -0.01 1.08 16 39 H 0.06 1.18 5.56 -2.39 -0.01 1.16 16 40 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.13 1.39 7.97 -2.38 -0.02 1.37 16 43 H 0.09 2.89 5.16 -2.38 -0.01 2.87 16 44 H 0.14 2.79 5.20 -2.39 -0.01 2.78 16 Total: -1.00 -72.42 322.35 4.78 -67.63 By element: Atomic # 1 Polarization: 27.38 SS G_CDS: 0.92 Total: 28.30 kcal Atomic # 6 Polarization: -7.78 SS G_CDS: 4.11 Total: -3.67 kcal Atomic # 7 Polarization: -81.10 SS G_CDS: -1.98 Total: -83.08 kcal Atomic # 8 Polarization: -47.73 SS G_CDS: -0.07 Total: -47.80 kcal Atomic # 14 Polarization: 36.81 SS G_CDS: 1.80 Total: 38.61 kcal Total: -72.42 4.78 -67.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336405580.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.995 kcal (2) G-P(sol) polarization free energy of solvation -72.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds