Wall clock time and date at job start Tue Mar 31 2020 05:25:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08996 * 109.47429 * 2 1 4 4 C 1.50698 * 109.47347 * 239.99769 * 2 1 3 5 5 H 1.08000 * 120.00042 * 272.09825 * 4 2 1 6 6 C 1.37882 * 119.99991 * 92.08738 * 4 2 1 7 7 N 1.31509 * 119.99819 * 178.58197 * 6 4 2 8 8 Si 1.86800 * 119.99971 * 358.58371 * 6 4 2 9 9 H 1.48505 * 109.46995 * 86.81382 * 8 6 4 10 10 H 1.48496 * 109.47071 * 206.81749 * 8 6 4 11 11 H 1.48505 * 109.47085 * 326.81619 * 8 6 4 12 12 N 1.46503 * 109.46960 * 120.00018 * 2 1 3 13 13 C 1.46496 * 120.00276 * 59.99769 * 12 2 1 14 14 C 1.34779 * 119.99576 * 239.99529 * 12 2 1 15 15 O 1.21281 * 120.00323 * 4.36715 * 14 12 2 16 16 C 1.50709 * 119.99576 * 184.35837 * 14 12 2 17 17 H 1.08995 * 109.72994 * 333.45136 * 16 14 12 18 18 C 1.53449 * 109.69846 * 212.86858 * 16 14 12 19 19 C 1.52334 * 109.55704 * 126.13348 * 18 16 14 20 20 C 1.52901 * 110.23899 * 44.39290 * 19 18 16 21 21 C 1.53573 * 109.44034 * 78.33087 * 20 19 18 22 22 C 1.53374 * 108.07924 * 287.88817 * 21 20 19 23 23 C 1.50234 * 109.89618 * 316.59781 * 22 21 20 24 24 O 1.20760 * 120.13180 * 292.61244 * 23 22 21 25 25 C 1.51208 * 119.74180 * 112.60008 * 23 22 21 26 26 H 1.09007 * 109.47250 * 54.70387 * 1 2 3 27 27 H 1.08996 * 109.47442 * 174.70800 * 1 2 3 28 28 H 1.08999 * 109.47057 * 294.70848 * 1 2 3 29 29 H 0.96998 * 119.99784 * 180.02562 * 7 6 4 30 30 H 1.08994 * 109.47183 * 265.38956 * 13 12 2 31 31 H 1.09004 * 109.46921 * 25.39183 * 13 12 2 32 32 H 1.08997 * 109.47267 * 145.38650 * 13 12 2 33 33 H 1.09001 * 109.45116 * 246.15330 * 18 16 14 34 34 H 1.08998 * 109.45508 * 6.10580 * 18 16 14 35 35 H 1.09005 * 109.34466 * 164.60962 * 19 18 16 36 36 H 1.09002 * 109.34304 * 284.14725 * 19 18 16 37 37 H 1.09000 * 109.46730 * 318.34206 * 20 19 18 38 38 H 1.09001 * 109.48764 * 198.32149 * 20 19 18 39 39 H 1.08998 * 109.74214 * 168.25045 * 21 20 19 40 40 H 1.09002 * 109.74276 * 47.53531 * 21 20 19 41 41 H 1.08992 * 109.39965 * 196.46649 * 22 21 20 42 42 H 1.09006 * 109.39627 * 76.72727 * 22 21 20 43 43 H 1.09007 * 109.90991 * 168.94724 * 25 23 22 44 44 H 1.09000 * 109.91573 * 47.78558 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.1801 -1.7802 -1.2138 6 6 2.3032 0.0052 -2.3774 7 7 2.7680 -0.6107 -3.4423 8 14 2.0098 1.8496 -2.4187 9 1 3.2147 2.5539 -1.9112 10 1 1.7381 2.2764 -3.8148 11 1 0.8434 2.1846 -1.5627 12 7 2.0182 -0.6906 1.1962 13 6 1.6643 -2.0931 1.4281 14 6 2.7932 -0.0356 2.0833 15 8 3.0211 1.1461 1.9330 16 6 3.3763 -0.7716 3.2621 17 1 2.7428 -1.6217 3.5151 18 6 3.4758 0.1754 4.4654 19 6 2.7711 -0.4471 5.6639 20 6 3.1458 -1.9241 5.7894 21 6 4.5401 -2.0458 6.4214 22 6 5.5748 -1.5985 5.3815 23 6 5.2333 -2.1782 4.0382 24 8 5.3100 -3.3693 3.8548 25 6 4.7928 -1.2644 2.9169 26 1 -0.3634 0.5938 -0.8388 27 1 -0.3634 -1.0232 -0.0948 28 1 -0.3633 0.4296 0.9336 29 1 2.9589 -0.1072 -4.2491 30 1 0.7835 -2.1446 2.0681 31 1 1.4495 -2.5761 0.4748 32 1 2.4966 -2.6024 1.9139 33 1 4.5248 0.3444 4.7086 34 1 3.0026 1.1260 4.2194 35 1 3.0687 0.0789 6.5711 36 1 1.6924 -0.3578 5.5349 37 1 3.1538 -2.3821 4.8003 38 1 2.4157 -2.4323 6.4193 39 1 4.7269 -3.0817 6.7045 40 1 4.6025 -1.4060 7.3017 41 1 6.5639 -1.9428 5.6835 42 1 5.5758 -0.5104 5.3166 43 1 4.7757 -1.8137 1.9754 44 1 5.4728 -0.4160 2.8405 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336405581.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:00 Heat of formation + Delta-G solvation = -78.018275 kcal Electronic energy + Delta-G solvation = -23756.028843 eV Core-core repulsion = 20480.404418 eV Total energy + Delta-G solvation = -3275.624425 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.77464 -39.04727 -36.92500 -35.45779 -33.46761 -32.51919 -31.33409 -30.28542 -27.15547 -26.29166 -25.74964 -25.19613 -22.59963 -21.40755 -20.08320 -19.04643 -18.22368 -17.43624 -16.57992 -15.89779 -15.78454 -15.63772 -15.07094 -14.85857 -14.40042 -14.17179 -13.77712 -13.48870 -13.18959 -12.70915 -12.57353 -12.44404 -12.35745 -12.20909 -12.06571 -11.84650 -11.73264 -11.61250 -11.43339 -11.16300 -11.09843 -10.74167 -10.67801 -10.41727 -10.38904 -10.10240 -9.81894 -9.69412 -9.27598 -8.92148 -8.65133 -7.70278 -6.17905 -4.20324 1.87095 3.20883 3.29285 3.36363 3.41515 3.75875 4.02554 4.36456 4.51351 4.59939 4.69596 4.82077 4.91141 4.99588 5.05496 5.16274 5.21228 5.29249 5.42233 5.48287 5.51289 5.67278 5.70021 5.79075 5.81879 5.86165 5.91536 5.93462 6.04364 6.14828 6.22334 6.26861 6.35205 6.35545 6.39647 6.57186 6.91020 7.06109 7.44812 7.45919 7.61263 8.11736 8.48006 8.82582 8.89921 9.44162 10.94044 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.025339 B = 0.005022 C = 0.004817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.748741 B = 5574.139876 C = 5811.546018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.225 3.775 3 H 0.062 0.938 4 C -0.527 4.527 5 H 0.079 0.921 6 C 0.080 3.920 7 N -0.892 5.892 8 Si 0.872 3.128 9 H -0.272 1.272 10 H -0.287 1.287 11 H -0.261 1.261 12 N -0.585 5.585 13 C 0.080 3.920 14 C 0.512 3.488 15 O -0.554 6.554 16 C -0.108 4.108 17 H 0.101 0.899 18 C -0.122 4.122 19 C -0.120 4.120 20 C -0.141 4.141 21 C -0.104 4.104 22 C -0.182 4.182 23 C 0.370 3.630 24 O -0.458 6.458 25 C -0.160 4.160 26 H 0.055 0.945 27 H 0.049 0.951 28 H 0.026 0.974 29 H 0.266 0.734 30 H 0.043 0.957 31 H 0.085 0.915 32 H 0.056 0.944 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.075 0.925 41 H 0.090 0.910 42 H 0.097 0.903 43 H 0.097 0.903 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.362 -1.461 19.242 19.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.124 3.876 3 H 0.080 0.920 4 C -0.565 4.565 5 H 0.097 0.903 6 C -0.124 4.124 7 N -0.528 5.528 8 Si 0.699 3.301 9 H -0.197 1.197 10 H -0.213 1.213 11 H -0.186 1.186 12 N -0.315 5.315 13 C -0.064 4.064 14 C 0.298 3.702 15 O -0.433 6.433 16 C -0.129 4.129 17 H 0.119 0.881 18 C -0.159 4.159 19 C -0.157 4.157 20 C -0.178 4.178 21 C -0.142 4.142 22 C -0.219 4.219 23 C 0.245 3.755 24 O -0.331 6.331 25 C -0.198 4.198 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.045 0.955 29 H 0.076 0.924 30 H 0.062 0.938 31 H 0.103 0.897 32 H 0.075 0.925 33 H 0.097 0.903 34 H 0.102 0.898 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.094 0.906 41 H 0.108 0.892 42 H 0.115 0.885 43 H 0.116 0.884 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 1.553 -1.465 18.829 18.950 hybrid contribution -0.095 0.874 -0.313 0.933 sum 1.458 -0.591 18.516 18.583 Atomic orbital electron populations 1.22269 0.98448 1.00913 0.99153 1.19251 0.90735 0.94789 0.82853 0.91987 1.21134 1.45065 0.96278 0.94039 0.90342 1.24931 0.93656 0.98352 0.95470 1.69886 1.43442 1.36467 1.03050 0.86945 0.79967 0.86012 0.77145 1.19744 1.21305 1.18581 1.48240 1.48835 1.11690 1.22780 1.21677 0.98985 0.83083 1.02648 1.20261 0.79117 0.87292 0.83482 1.90622 1.60983 1.15836 1.75892 1.21739 0.95965 0.99870 0.95332 0.88104 1.21893 1.02249 0.99180 0.92580 1.21525 1.00668 0.95145 0.98382 1.22100 0.96858 0.97250 1.01625 1.21629 0.93683 1.01869 0.97019 1.22421 1.01226 1.03642 0.94610 1.24552 0.71271 0.89238 0.90402 1.90408 1.40540 1.18226 1.83955 1.22519 0.96761 1.01326 0.99195 0.92562 0.93147 0.95529 0.92387 0.93807 0.89677 0.92495 0.90345 0.89848 0.91405 0.91828 0.91031 0.91483 0.91319 0.90631 0.89176 0.88450 0.88431 0.87854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.14 8.94 37.15 0.33 -2.81 16 2 C 0.22 5.36 2.19 -69.08 -0.15 5.20 16 3 H 0.06 1.62 4.50 -51.93 -0.23 1.39 16 4 C -0.53 -14.36 8.70 -34.44 -0.30 -14.66 16 5 H 0.08 2.27 6.90 -52.49 -0.36 1.91 16 6 C 0.08 2.27 5.47 -17.82 -0.10 2.17 16 7 N -0.89 -26.71 13.96 55.43 0.77 -25.93 16 8 Si 0.87 21.83 26.42 -169.99 -4.49 17.33 16 9 H -0.27 -6.96 7.11 56.52 0.40 -6.56 16 10 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 11 H -0.26 -6.25 6.09 56.52 0.34 -5.90 16 12 N -0.59 -11.97 2.75 -175.27 -0.48 -12.45 16 13 C 0.08 1.33 8.93 59.84 0.53 1.86 16 14 C 0.51 9.96 6.65 -10.98 -0.07 9.89 16 15 O -0.55 -12.70 15.17 5.56 0.08 -12.61 16 16 C -0.11 -1.52 1.34 -91.06 -0.12 -1.65 16 17 H 0.10 1.32 3.77 -51.93 -0.20 1.12 16 18 C -0.12 -1.43 4.92 -26.84 -0.13 -1.56 16 19 C -0.12 -1.11 5.62 -27.12 -0.15 -1.27 16 20 C -0.14 -1.30 5.42 -26.48 -0.14 -1.44 16 21 C -0.10 -0.85 5.94 -26.24 -0.16 -1.01 16 22 C -0.18 -1.63 5.42 -27.91 -0.15 -1.78 16 23 C 0.37 4.58 4.29 -29.01 -0.12 4.46 16 24 O -0.46 -7.11 17.82 6.00 0.11 -7.00 16 25 C -0.16 -2.19 5.05 -27.16 -0.14 -2.32 16 26 H 0.06 1.20 6.80 -51.93 -0.35 0.85 16 27 H 0.05 0.99 7.85 -51.93 -0.41 0.58 16 28 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 30 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.08 1.54 6.63 -51.93 -0.34 1.19 16 32 H 0.06 0.85 6.48 -51.93 -0.34 0.51 16 33 H 0.08 0.79 4.50 -51.93 -0.23 0.56 16 34 H 0.08 1.16 6.92 -51.93 -0.36 0.80 16 35 H 0.07 0.53 7.83 -51.93 -0.41 0.12 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.79 3.82 -51.93 -0.20 0.59 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.08 0.49 7.89 -51.93 -0.41 0.08 16 41 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.10 0.76 5.20 -51.93 -0.27 0.49 16 43 H 0.10 1.53 8.13 -51.92 -0.42 1.11 16 44 H 0.10 1.32 7.97 -51.93 -0.41 0.90 16 LS Contribution 327.66 15.07 4.94 4.94 Total: -1.00 -32.69 327.66 -6.62 -39.31 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -6.68 Total: 1.33 kcal Atomic # 6 Polarization: -4.04 SS G_CDS: -0.87 Total: -4.91 kcal Atomic # 7 Polarization: -38.67 SS G_CDS: 0.29 Total: -38.38 kcal Atomic # 8 Polarization: -19.80 SS G_CDS: 0.19 Total: -19.61 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.49 Total: 17.33 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.69 -6.62 -39.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336405581.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.707 kcal (2) G-P(sol) polarization free energy of solvation -32.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds