Wall clock time and date at job start Tue Mar 31 2020 05:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08996 * 109.47429 * 2 1 4 4 C 1.50698 * 109.47347 * 239.99769 * 2 1 3 5 5 H 1.08000 * 120.00042 * 272.09825 * 4 2 1 6 6 C 1.37882 * 119.99991 * 92.08738 * 4 2 1 7 7 N 1.31509 * 119.99819 * 178.58197 * 6 4 2 8 8 Si 1.86800 * 119.99971 * 358.58371 * 6 4 2 9 9 H 1.48505 * 109.46995 * 86.81382 * 8 6 4 10 10 H 1.48496 * 109.47071 * 206.81749 * 8 6 4 11 11 H 1.48505 * 109.47085 * 326.81619 * 8 6 4 12 12 N 1.46503 * 109.46960 * 120.00018 * 2 1 3 13 13 C 1.46496 * 120.00276 * 59.99769 * 12 2 1 14 14 C 1.34779 * 119.99576 * 239.99529 * 12 2 1 15 15 O 1.21281 * 120.00323 * 4.36715 * 14 12 2 16 16 C 1.50709 * 119.99576 * 184.35837 * 14 12 2 17 17 H 1.08995 * 109.72994 * 333.45136 * 16 14 12 18 18 C 1.53449 * 109.69846 * 212.86858 * 16 14 12 19 19 C 1.52334 * 109.55704 * 126.13348 * 18 16 14 20 20 C 1.52901 * 110.23899 * 44.39290 * 19 18 16 21 21 C 1.53573 * 109.44034 * 78.33087 * 20 19 18 22 22 C 1.53374 * 108.07924 * 287.88817 * 21 20 19 23 23 C 1.50234 * 109.89618 * 316.59781 * 22 21 20 24 24 O 1.20760 * 120.13180 * 292.61244 * 23 22 21 25 25 C 1.51208 * 119.74180 * 112.60008 * 23 22 21 26 26 H 1.09007 * 109.47250 * 54.70387 * 1 2 3 27 27 H 1.08996 * 109.47442 * 174.70800 * 1 2 3 28 28 H 1.08999 * 109.47057 * 294.70848 * 1 2 3 29 29 H 0.96998 * 119.99784 * 180.02562 * 7 6 4 30 30 H 1.08994 * 109.47183 * 265.38956 * 13 12 2 31 31 H 1.09004 * 109.46921 * 25.39183 * 13 12 2 32 32 H 1.08997 * 109.47267 * 145.38650 * 13 12 2 33 33 H 1.09001 * 109.45116 * 246.15330 * 18 16 14 34 34 H 1.08998 * 109.45508 * 6.10580 * 18 16 14 35 35 H 1.09005 * 109.34466 * 164.60962 * 19 18 16 36 36 H 1.09002 * 109.34304 * 284.14725 * 19 18 16 37 37 H 1.09000 * 109.46730 * 318.34206 * 20 19 18 38 38 H 1.09001 * 109.48764 * 198.32149 * 20 19 18 39 39 H 1.08998 * 109.74214 * 168.25045 * 21 20 19 40 40 H 1.09002 * 109.74276 * 47.53531 * 21 20 19 41 41 H 1.08992 * 109.39965 * 196.46649 * 22 21 20 42 42 H 1.09006 * 109.39627 * 76.72727 * 22 21 20 43 43 H 1.09007 * 109.90991 * 168.94724 * 25 23 22 44 44 H 1.09000 * 109.91573 * 47.78558 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.1801 -1.7802 -1.2138 6 6 2.3032 0.0052 -2.3774 7 7 2.7680 -0.6107 -3.4423 8 14 2.0098 1.8496 -2.4187 9 1 3.2147 2.5539 -1.9112 10 1 1.7381 2.2764 -3.8148 11 1 0.8434 2.1846 -1.5627 12 7 2.0182 -0.6906 1.1962 13 6 1.6643 -2.0931 1.4281 14 6 2.7932 -0.0356 2.0833 15 8 3.0211 1.1461 1.9330 16 6 3.3763 -0.7716 3.2621 17 1 2.7428 -1.6217 3.5151 18 6 3.4758 0.1754 4.4654 19 6 2.7711 -0.4471 5.6639 20 6 3.1458 -1.9241 5.7894 21 6 4.5401 -2.0458 6.4214 22 6 5.5748 -1.5985 5.3815 23 6 5.2333 -2.1782 4.0382 24 8 5.3100 -3.3693 3.8548 25 6 4.7928 -1.2644 2.9169 26 1 -0.3634 0.5938 -0.8388 27 1 -0.3634 -1.0232 -0.0948 28 1 -0.3633 0.4296 0.9336 29 1 2.9589 -0.1072 -4.2491 30 1 0.7835 -2.1446 2.0681 31 1 1.4495 -2.5761 0.4748 32 1 2.4966 -2.6024 1.9139 33 1 4.5248 0.3444 4.7086 34 1 3.0026 1.1260 4.2194 35 1 3.0687 0.0789 6.5711 36 1 1.6924 -0.3578 5.5349 37 1 3.1538 -2.3821 4.8003 38 1 2.4157 -2.4323 6.4193 39 1 4.7269 -3.0817 6.7045 40 1 4.6025 -1.4060 7.3017 41 1 6.5639 -1.9428 5.6835 42 1 5.5758 -0.5104 5.3166 43 1 4.7757 -1.8137 1.9754 44 1 5.4728 -0.4160 2.8405 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336405581.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:59 Heat of formation + Delta-G solvation = -98.824261 kcal Electronic energy + Delta-G solvation = -23756.931058 eV Core-core repulsion = 20480.404418 eV Total energy + Delta-G solvation = -3276.526640 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.89893 -40.45666 -37.98294 -37.12002 -34.88421 -34.19586 -32.24404 -32.00899 -27.99793 -27.74518 -27.30545 -26.80871 -23.73911 -22.55204 -21.33374 -20.10452 -19.56413 -19.28338 -18.18575 -17.37236 -16.84791 -16.74042 -16.26178 -16.17046 -15.85543 -15.34303 -14.98345 -14.92266 -14.55549 -14.30421 -14.14324 -13.97270 -13.49966 -13.41054 -13.15577 -13.11192 -13.01693 -12.96706 -12.64440 -12.61390 -12.43412 -12.25399 -12.09146 -11.81665 -11.52694 -11.32466 -11.29158 -10.88251 -10.85891 -10.81577 -10.33845 -9.38490 -8.38102 -6.42980 0.85937 1.27118 1.32356 1.40337 1.71317 2.24295 2.28374 2.99222 3.07690 3.49559 3.71709 3.76574 3.93865 4.01587 4.11733 4.17732 4.24490 4.30880 4.35592 4.46959 4.51267 4.59009 4.65144 4.71065 4.77681 4.78396 4.87098 4.92122 4.94928 5.03069 5.10824 5.14202 5.18262 5.25201 5.31551 5.35137 5.45965 5.51921 5.53111 5.77944 6.13592 6.47507 6.62406 6.72114 7.20863 7.34169 8.77334 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.025339 B = 0.005022 C = 0.004817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.748741 B = 5574.139876 C = 5811.546018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.224 3.776 3 H 0.040 0.960 4 C -0.523 4.523 5 H 0.050 0.950 6 C 0.027 3.973 7 N -0.936 5.936 8 Si 0.926 3.074 9 H -0.283 1.283 10 H -0.277 1.277 11 H -0.243 1.243 12 N -0.597 5.597 13 C 0.080 3.920 14 C 0.504 3.496 15 O -0.593 6.593 16 C -0.095 4.095 17 H 0.115 0.885 18 C -0.118 4.118 19 C -0.113 4.113 20 C -0.142 4.142 21 C -0.101 4.101 22 C -0.177 4.177 23 C 0.381 3.619 24 O -0.493 6.493 25 C -0.164 4.164 26 H 0.050 0.950 27 H 0.060 0.940 28 H 0.048 0.952 29 H 0.268 0.732 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.097 0.903 34 H 0.061 0.939 35 H 0.093 0.907 36 H 0.060 0.940 37 H 0.049 0.951 38 H 0.080 0.920 39 H 0.066 0.934 40 H 0.104 0.896 41 H 0.106 0.894 42 H 0.113 0.887 43 H 0.068 0.932 44 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.942 -0.917 22.542 22.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.122 3.878 3 H 0.058 0.942 4 C -0.561 4.561 5 H 0.068 0.932 6 C -0.172 4.172 7 N -0.576 5.576 8 Si 0.751 3.249 9 H -0.209 1.209 10 H -0.203 1.203 11 H -0.167 1.167 12 N -0.326 5.326 13 C -0.062 4.062 14 C 0.293 3.707 15 O -0.475 6.475 16 C -0.116 4.116 17 H 0.132 0.868 18 C -0.156 4.156 19 C -0.150 4.150 20 C -0.179 4.179 21 C -0.139 4.139 22 C -0.214 4.214 23 C 0.259 3.741 24 O -0.369 6.369 25 C -0.203 4.203 26 H 0.069 0.931 27 H 0.080 0.920 28 H 0.067 0.933 29 H 0.077 0.923 30 H 0.096 0.904 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.116 0.884 34 H 0.080 0.920 35 H 0.112 0.888 36 H 0.079 0.921 37 H 0.068 0.932 38 H 0.099 0.901 39 H 0.085 0.915 40 H 0.122 0.878 41 H 0.124 0.876 42 H 0.132 0.868 43 H 0.087 0.913 44 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 1.112 -0.938 22.156 22.204 hybrid contribution 0.071 0.630 -1.321 1.466 sum 1.183 -0.307 20.835 20.871 Atomic orbital electron populations 1.22121 0.95957 1.01800 1.00086 1.19040 0.92575 0.93365 0.82869 0.94235 1.21371 1.44043 0.95220 0.95485 0.93157 1.25652 0.93907 1.02356 0.95304 1.69999 1.45603 1.38110 1.03847 0.86088 0.79941 0.81145 0.77754 1.20933 1.20270 1.16669 1.48239 1.49290 1.13064 1.22042 1.21815 1.00999 0.80977 1.02457 1.21169 0.78091 0.87109 0.84346 1.90592 1.62032 1.17732 1.77104 1.21738 0.95806 1.00272 0.93834 0.86780 1.21920 1.03719 0.97568 0.92350 1.21496 1.00211 0.95271 0.98006 1.22093 0.98088 0.96930 1.00772 1.21682 0.92341 1.02471 0.97380 1.22458 1.02387 1.04374 0.92196 1.24787 0.69850 0.88269 0.91212 1.90407 1.42360 1.19578 1.84531 1.22563 0.96980 1.01752 0.98988 0.93097 0.92047 0.93331 0.92275 0.90445 0.91554 0.91002 0.88449 0.91993 0.88830 0.92112 0.93243 0.90133 0.91534 0.87803 0.87574 0.86848 0.91304 0.87049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.75 8.94 71.98 0.64 -5.11 16 2 C 0.22 10.72 2.19 44.24 0.10 10.81 16 3 H 0.04 2.08 4.50 -2.39 -0.01 2.07 16 4 C -0.52 -29.25 8.70 25.60 0.22 -29.03 16 5 H 0.05 3.04 6.90 -2.91 -0.02 3.02 16 6 C 0.03 1.58 5.47 84.66 0.46 2.04 16 7 N -0.94 -57.83 13.96 21.45 0.30 -57.53 16 8 Si 0.93 45.70 26.42 68.60 1.81 47.52 16 9 H -0.28 -14.38 7.11 99.48 0.71 -13.68 16 10 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 11 H -0.24 -11.17 6.09 99.48 0.61 -10.56 16 12 N -0.60 -24.35 2.75 -826.81 -2.28 -26.62 16 13 C 0.08 2.62 8.93 127.77 1.14 3.76 16 14 C 0.50 19.53 6.65 87.66 0.58 20.11 16 15 O -0.59 -27.36 15.17 -3.03 -0.05 -27.41 16 16 C -0.10 -2.59 1.34 -11.08 -0.01 -2.60 16 17 H 0.11 2.79 3.77 -2.39 -0.01 2.78 16 18 C -0.12 -2.49 4.92 30.52 0.15 -2.34 16 19 C -0.11 -1.68 5.62 30.34 0.17 -1.51 16 20 C -0.14 -2.10 5.42 30.75 0.17 -1.93 16 21 C -0.10 -1.23 5.94 30.91 0.18 -1.05 16 22 C -0.18 -2.56 5.42 29.83 0.16 -2.40 16 23 C 0.38 8.84 4.29 29.12 0.12 8.97 16 24 O -0.49 -14.93 17.82 -1.45 -0.03 -14.95 16 25 C -0.16 -4.42 5.05 30.31 0.15 -4.27 16 26 H 0.05 2.10 6.80 -2.38 -0.02 2.09 16 27 H 0.06 2.33 7.85 -2.39 -0.02 2.31 16 28 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 30 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.07 2.42 6.63 -2.38 -0.02 2.41 16 32 H 0.07 2.11 6.48 -2.39 -0.02 2.09 16 33 H 0.10 1.65 4.50 -2.39 -0.01 1.64 16 34 H 0.06 1.63 6.92 -2.39 -0.02 1.61 16 35 H 0.09 0.98 7.83 -2.38 -0.02 0.96 16 36 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.05 0.96 3.82 -2.39 -0.01 0.95 16 38 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.10 0.76 7.89 -2.39 -0.02 0.74 16 41 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.11 1.28 5.20 -2.38 -0.01 1.27 16 43 H 0.07 2.23 8.13 -2.38 -0.02 2.21 16 44 H 0.11 2.77 7.97 -2.39 -0.02 2.76 16 Total: -1.00 -73.61 327.66 4.91 -68.69 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: 0.90 Total: 14.86 kcal Atomic # 6 Polarization: -8.79 SS G_CDS: 4.24 Total: -4.55 kcal Atomic # 7 Polarization: -82.18 SS G_CDS: -1.98 Total: -84.16 kcal Atomic # 8 Polarization: -42.29 SS G_CDS: -0.07 Total: -42.36 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 1.81 Total: 47.52 kcal Total: -73.61 4.91 -68.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336405581.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.130 kcal (2) G-P(sol) polarization free energy of solvation -73.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds