Wall clock time and date at job start Tue Mar 31 2020 05:17:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09010 * 109.62648 * 2 1 4 4 C 1.51267 * 109.78771 * 239.52451 * 2 1 3 5 5 O 1.20763 * 120.85542 * 111.55569 * 4 2 1 6 6 C 1.51269 * 118.29691 * 291.53898 * 4 2 1 7 7 C 1.53245 * 108.48549 * 308.60702 * 6 4 2 8 8 C 1.52954 * 109.39502 * 54.73417 * 7 6 4 9 9 H 1.09000 * 109.41576 * 56.36871 * 8 7 6 10 10 C 1.50702 * 109.41249 * 176.22876 * 8 7 6 11 11 O 1.21280 * 119.99908 * 35.45261 * 10 8 7 12 12 N 1.34781 * 119.99820 * 215.45487 * 10 8 7 13 13 C 1.46500 * 119.99965 * 5.65373 * 12 10 8 14 14 C 1.46499 * 119.99681 * 185.65160 * 12 10 8 15 15 C 1.50694 * 109.47224 * 270.00049 * 14 12 10 16 16 H 1.07998 * 120.00371 * 0.02562 * 15 14 12 17 17 C 1.37884 * 119.99864 * 180.02562 * 15 14 12 18 18 N 1.31514 * 120.00040 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 120.00032 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47064 * 179.97438 * 19 17 15 21 21 H 1.48500 * 109.46673 * 299.99761 * 19 17 15 22 22 H 1.48500 * 109.47149 * 59.99650 * 19 17 15 23 23 C 1.52964 * 109.76189 * 296.29791 * 8 7 6 24 24 C 1.53004 * 109.48081 * 183.61383 * 23 8 7 25 25 C 1.52998 * 109.47996 * 303.64345 * 23 8 7 26 26 H 1.08999 * 109.47129 * 299.62032 * 1 2 3 27 27 H 1.09001 * 109.47275 * 59.61979 * 1 2 3 28 28 H 1.09000 * 109.47235 * 179.61960 * 1 2 3 29 29 H 1.09000 * 109.62744 * 68.36356 * 6 4 2 30 30 H 1.09008 * 109.62737 * 188.73935 * 6 4 2 31 31 H 1.09005 * 109.53729 * 294.72545 * 7 6 4 32 32 H 1.08996 * 109.42722 * 174.67729 * 7 6 4 33 33 H 1.08998 * 109.47213 * 265.53829 * 13 12 10 34 34 H 1.09002 * 109.47169 * 25.54407 * 13 12 10 35 35 H 1.08999 * 109.46555 * 145.54214 * 13 12 10 36 36 H 1.09002 * 109.46911 * 150.00087 * 14 12 10 37 37 H 1.09000 * 109.47244 * 30.00378 * 14 12 10 38 38 H 0.97004 * 120.00008 * 180.02562 * 18 17 15 39 39 H 1.08998 * 109.46950 * 55.34427 * 24 23 8 40 40 H 1.09005 * 109.46615 * 175.33463 * 24 23 8 41 41 H 1.08997 * 109.47282 * 295.33638 * 24 23 8 42 42 H 1.08995 * 109.47784 * 60.00045 * 25 23 8 43 43 H 1.09002 * 109.47192 * 180.02562 * 25 23 8 44 44 H 1.09007 * 109.47093 * 299.99784 * 25 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8961 1.0268 0.0000 4 6 2.0420 -0.7219 -1.2267 5 8 2.6101 -0.1211 -2.1069 6 6 1.8247 -2.2158 -1.3226 7 6 2.3300 -2.8643 -0.0293 8 6 1.6472 -2.2050 1.1700 9 1 0.5656 -2.2836 1.0595 10 6 2.0734 -2.9036 2.4355 11 8 3.2038 -3.3300 2.5415 12 7 1.1983 -3.0545 3.4494 13 6 -0.1996 -2.6517 3.2766 14 6 1.6451 -3.6213 4.7243 15 6 1.4806 -5.1189 4.6933 16 1 1.0834 -5.6005 3.8120 17 6 1.8373 -5.8745 5.7902 18 7 2.3214 -5.2882 6.8632 19 14 1.6340 -7.7310 5.7516 20 1 2.0868 -8.3055 7.0439 21 1 0.2043 -8.0679 5.5333 22 1 2.4499 -8.2954 4.6465 23 6 2.0447 -0.7298 1.2451 24 6 1.4310 -0.0990 2.4966 25 6 3.5689 -0.6149 1.3106 26 1 -0.3633 0.5079 0.8934 27 1 -0.3634 0.5197 -0.8865 28 1 -0.3634 -1.0276 -0.0068 29 1 0.7619 -2.4239 -1.4467 30 1 2.3773 -2.6123 -2.1744 31 1 3.4091 -2.7307 0.0479 32 1 2.0952 -3.9286 -0.0417 33 1 -0.3331 -1.6350 3.6462 34 1 -0.4610 -2.6912 2.2192 35 1 -0.8446 -3.3292 3.8360 36 1 1.0469 -3.2068 5.5357 37 1 2.6947 -3.3743 4.8838 38 1 2.5727 -5.8198 7.6348 39 1 1.7304 -0.6700 3.3754 40 1 1.7811 0.9286 2.5944 41 1 0.3443 -0.1061 2.4115 42 1 4.0060 -1.0639 0.4188 43 1 3.8521 0.4363 1.3646 44 1 3.9348 -1.1352 2.1959 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336425387.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:09 Heat of formation + Delta-G solvation = -84.554233 kcal Electronic energy + Delta-G solvation = -24046.453857 eV Core-core repulsion = 20770.546012 eV Total energy + Delta-G solvation = -3275.907845 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.17769 -39.00973 -37.00512 -34.91753 -33.17979 -32.63774 -31.44037 -28.79491 -27.29319 -27.14051 -25.73358 -24.72653 -23.34389 -22.07790 -20.63213 -18.75042 -17.53417 -16.71416 -16.56230 -16.04679 -15.75368 -15.39957 -14.87810 -14.68605 -14.24832 -14.08709 -13.77883 -13.54038 -13.02723 -12.72456 -12.58136 -12.52819 -12.21006 -12.08957 -12.05841 -11.86617 -11.77658 -11.51441 -11.46142 -11.28842 -11.18070 -10.91318 -10.71858 -10.62231 -10.55329 -10.17169 -10.10909 -9.64304 -9.38172 -8.77663 -8.44132 -7.63903 -6.05132 -4.09646 1.86059 3.30709 3.34828 3.35774 3.40860 3.86190 3.99316 4.40754 4.44572 4.55929 4.70855 4.87758 4.94215 5.03031 5.15200 5.21775 5.27529 5.29975 5.38918 5.44899 5.51909 5.59666 5.66566 5.74473 5.75686 5.81178 5.86422 5.93073 5.93905 6.03655 6.05674 6.16612 6.24195 6.29058 6.39959 6.51589 7.04079 7.38852 7.41095 7.52779 7.90982 8.22543 8.41065 8.89468 9.09443 9.55460 11.02839 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.028382 B = 0.004759 C = 0.004577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.289355 B = 5882.134067 C = 6116.542241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.128 4.128 3 H 0.095 0.905 4 C 0.371 3.629 5 O -0.462 6.462 6 C -0.169 4.169 7 C -0.101 4.101 8 C -0.111 4.111 9 H 0.095 0.905 10 C 0.514 3.486 11 O -0.535 6.535 12 N -0.600 5.600 13 C 0.078 3.922 14 C 0.247 3.753 15 C -0.525 4.525 16 H 0.056 0.944 17 C 0.061 3.939 18 N -0.896 5.896 19 Si 0.897 3.103 20 H -0.286 1.286 21 H -0.277 1.277 22 H -0.277 1.277 23 C -0.037 4.037 24 C -0.153 4.153 25 C -0.152 4.152 26 H 0.075 0.925 27 H 0.058 0.942 28 H 0.065 0.935 29 H 0.098 0.902 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.047 0.953 34 H 0.059 0.941 35 H 0.071 0.929 36 H 0.031 0.969 37 H 0.041 0.959 38 H 0.263 0.737 39 H 0.070 0.930 40 H 0.057 0.943 41 H 0.065 0.935 42 H 0.055 0.945 43 H 0.054 0.946 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.458 10.569 -12.328 17.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.147 4.147 3 H 0.114 0.886 4 C 0.247 3.753 5 O -0.336 6.336 6 C -0.207 4.207 7 C -0.139 4.139 8 C -0.132 4.132 9 H 0.113 0.887 10 C 0.300 3.700 11 O -0.412 6.412 12 N -0.332 5.332 13 C -0.066 4.066 14 C 0.128 3.872 15 C -0.563 4.563 16 H 0.074 0.926 17 C -0.141 4.141 18 N -0.535 5.535 19 Si 0.725 3.275 20 H -0.212 1.212 21 H -0.203 1.203 22 H -0.202 1.202 23 C -0.037 4.037 24 C -0.210 4.210 25 C -0.209 4.209 26 H 0.094 0.906 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.116 0.884 30 H 0.108 0.892 31 H 0.102 0.898 32 H 0.097 0.903 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.089 0.911 36 H 0.049 0.951 37 H 0.059 0.941 38 H 0.073 0.927 39 H 0.089 0.911 40 H 0.076 0.924 41 H 0.083 0.917 42 H 0.074 0.926 43 H 0.073 0.927 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.486 10.613 -12.508 17.297 hybrid contribution -0.280 -1.154 0.167 1.199 sum -5.766 9.459 -12.341 16.584 Atomic orbital electron populations 1.21879 0.92647 1.02964 1.02900 1.21990 0.97860 1.00739 0.94108 0.88628 1.24886 0.73665 0.91344 0.85400 1.90386 1.32463 1.70788 1.39945 1.22339 1.03911 0.94043 1.00379 1.21442 1.01958 1.00011 0.90480 1.21590 1.02011 0.94884 0.94706 0.88707 1.20039 0.85765 0.79927 0.84262 1.90668 1.20225 1.49432 1.80917 1.48165 1.08383 1.61225 1.15429 1.21793 0.84070 0.99759 1.00939 1.19252 0.96529 0.93225 0.78218 1.21379 1.42872 0.91915 1.00183 0.92578 1.24928 0.95015 0.98786 0.95337 1.69917 1.43183 1.35868 1.04497 0.86576 0.78396 0.85268 0.77278 1.21197 1.20291 1.20208 1.20353 0.96641 0.92619 0.94128 1.22156 1.00910 1.00815 0.97113 1.22056 0.93639 1.01544 1.03614 0.90585 0.92329 0.91569 0.88376 0.89185 0.89762 0.90259 0.93421 0.92240 0.91057 0.95094 0.94056 0.92687 0.91060 0.92393 0.91653 0.92564 0.92725 0.90446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 8.40 37.15 0.31 -0.85 16 2 C -0.13 -1.32 2.23 -91.38 -0.20 -1.52 16 3 H 0.10 0.99 8.14 -51.92 -0.42 0.56 16 4 C 0.37 4.44 5.10 -28.48 -0.15 4.29 16 5 O -0.46 -6.94 17.89 6.00 0.11 -6.83 16 6 C -0.17 -1.77 5.90 -27.48 -0.16 -1.93 16 7 C -0.10 -1.31 4.55 -26.63 -0.12 -1.44 16 8 C -0.11 -1.50 1.27 -91.81 -0.12 -1.61 16 9 H 0.10 1.07 3.84 -51.93 -0.20 0.87 16 10 C 0.51 9.81 4.95 -10.98 -0.05 9.76 16 11 O -0.54 -12.65 14.68 5.56 0.08 -12.57 16 12 N -0.60 -11.83 2.20 -182.96 -0.40 -12.23 16 13 C 0.08 1.14 9.22 59.85 0.55 1.69 16 14 C 0.25 6.23 5.14 -5.20 -0.03 6.20 16 15 C -0.52 -14.57 9.39 -34.44 -0.32 -14.89 16 16 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 17 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 18 N -0.90 -26.29 13.29 55.43 0.74 -25.55 16 19 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16 20 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 C -0.04 -0.44 0.32 -154.41 -0.05 -0.49 16 24 C -0.15 -1.76 6.64 37.16 0.25 -1.51 16 25 C -0.15 -2.09 7.54 37.16 0.28 -1.81 16 26 H 0.08 0.53 6.26 -51.93 -0.33 0.21 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.48 6.00 -51.93 -0.31 0.17 16 29 H 0.10 0.81 7.81 -51.93 -0.41 0.40 16 30 H 0.09 0.91 8.14 -51.92 -0.42 0.49 16 31 H 0.08 1.23 6.02 -51.93 -0.31 0.92 16 32 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.05 0.59 6.59 -51.93 -0.34 0.24 16 34 H 0.06 0.69 5.67 -51.93 -0.29 0.39 16 35 H 0.07 1.09 8.11 -51.93 -0.42 0.67 16 36 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 37 H 0.04 1.18 7.51 -51.93 -0.39 0.79 16 38 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 39 H 0.07 1.03 6.16 -51.93 -0.32 0.71 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.06 0.62 5.12 -51.93 -0.27 0.35 16 42 H 0.06 0.79 5.60 -51.93 -0.29 0.50 16 43 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.08 1.29 6.53 -51.92 -0.34 0.95 16 LS Contribution 329.29 15.07 4.96 4.96 Total: -1.00 -32.93 329.29 -6.16 -39.09 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -6.72 Total: -1.02 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: 0.09 Total: -2.48 kcal Atomic # 7 Polarization: -38.11 SS G_CDS: 0.33 Total: -37.78 kcal Atomic # 8 Polarization: -19.59 SS G_CDS: 0.19 Total: -19.40 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.93 -6.16 -39.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336425387.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.461 kcal (2) G-P(sol) polarization free energy of solvation -32.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds