Wall clock time and date at job start Tue Mar 31 2020 05:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.62426 * 2 1 4 4 C 1.51273 * 109.62356 * 120.37431 * 2 1 3 5 5 O 1.20760 * 120.84643 * 248.53758 * 4 2 1 6 6 C 1.51273 * 118.29880 * 68.56222 * 4 2 1 7 7 C 1.53229 * 108.53505 * 51.34361 * 6 4 2 8 8 C 1.52951 * 109.40881 * 305.37035 * 7 6 4 9 9 H 1.09006 * 109.41662 * 303.49996 * 8 7 6 10 10 C 1.50699 * 109.41774 * 183.70476 * 8 7 6 11 11 O 1.21278 * 120.00073 * 320.85770 * 10 8 7 12 12 N 1.34775 * 120.00066 * 140.84904 * 10 8 7 13 13 C 1.46500 * 119.99953 * 4.88493 * 12 10 8 14 14 C 1.46499 * 120.00202 * 184.87556 * 12 10 8 15 15 C 1.50707 * 109.46751 * 90.00419 * 14 12 10 16 16 H 1.08004 * 119.99922 * 0.02562 * 15 14 12 17 17 C 1.37869 * 119.99793 * 179.97438 * 15 14 12 18 18 N 1.31523 * 119.99703 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 120.00481 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47113 * 89.99797 * 19 17 15 21 21 H 1.48494 * 109.47337 * 209.99823 * 19 17 15 22 22 H 1.48502 * 109.46795 * 329.99988 * 19 17 15 23 23 C 1.52967 * 109.81722 * 63.59975 * 8 7 6 24 24 C 1.52995 * 109.48311 * 176.42408 * 23 8 7 25 25 C 1.53006 * 109.47855 * 56.38081 * 23 8 7 26 26 H 1.09003 * 109.47175 * 299.62481 * 1 2 3 27 27 H 1.08999 * 109.46716 * 59.62657 * 1 2 3 28 28 H 1.09000 * 109.47095 * 179.62538 * 1 2 3 29 29 H 1.08997 * 109.62019 * 291.63196 * 6 4 2 30 30 H 1.08996 * 109.62175 * 171.05780 * 6 4 2 31 31 H 1.09000 * 109.48216 * 65.35601 * 7 6 4 32 32 H 1.09007 * 109.47816 * 185.39067 * 7 6 4 33 33 H 1.09003 * 109.47294 * 84.72346 * 13 12 10 34 34 H 1.09001 * 109.47174 * 204.72350 * 13 12 10 35 35 H 1.08996 * 109.47290 * 324.72472 * 13 12 10 36 36 H 1.08992 * 109.47652 * 210.00244 * 14 12 10 37 37 H 1.08995 * 109.47201 * 330.00971 * 14 12 10 38 38 H 0.97001 * 119.99814 * 179.97438 * 18 17 15 39 39 H 1.08999 * 109.46905 * 174.81281 * 24 23 8 40 40 H 1.08997 * 109.47134 * 294.80718 * 24 23 8 41 41 H 1.08996 * 109.47502 * 54.80843 * 24 23 8 42 42 H 1.08994 * 109.47114 * 300.06763 * 25 23 8 43 43 H 1.09001 * 109.46545 * 60.06930 * 25 23 8 44 44 H 1.09000 * 109.46797 * 180.02562 * 25 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8961 1.0267 0.0000 4 6 2.0381 -0.7205 1.2293 5 8 2.6034 -0.1185 2.1104 6 6 1.8204 -2.2143 1.3262 7 6 2.3285 -2.8654 0.0355 8 6 1.6509 -2.2065 -1.1670 9 1 0.5688 -2.2849 -1.0611 10 6 2.0811 -2.9066 -2.4302 11 8 3.2295 -3.2749 -2.5584 12 7 1.1897 -3.1236 -3.4175 13 6 -0.1687 -2.5856 -3.3092 14 6 1.5791 -3.8972 -4.5991 15 6 1.2909 -5.3571 -4.3609 16 1 0.8603 -5.6766 -3.4234 17 6 1.5759 -6.2847 -5.3403 18 7 1.3248 -7.5589 -5.1322 19 14 2.3199 -5.7321 -6.9622 20 1 3.8012 -5.7529 -6.8598 21 1 1.8856 -6.6511 -8.0447 22 1 1.8644 -4.3529 -7.2712 23 6 2.0487 -0.7314 -1.2426 24 6 1.4390 -0.1021 -2.4967 25 6 3.5732 -0.6166 -1.3031 26 1 -0.3634 0.5080 0.8933 27 1 -0.3633 0.5196 -0.8866 28 1 -0.3633 -1.0276 -0.0067 29 1 0.7573 -2.4222 1.4472 30 1 2.3731 -2.6102 2.1782 31 1 3.4080 -2.7331 -0.0378 32 1 2.0925 -3.9295 0.0479 33 1 -0.1802 -1.5543 -3.6617 34 1 -0.8464 -3.1850 -3.9171 35 1 -0.4901 -2.6174 -2.2682 36 1 1.0119 -3.5512 -5.4631 37 1 2.6444 -3.7630 -4.7863 38 1 1.5250 -8.2115 -5.8214 39 1 1.6450 0.9683 -2.5029 40 1 1.8766 -0.5613 -3.3831 41 1 0.3613 -0.2647 -2.4978 42 1 4.0071 -1.0655 -0.4097 43 1 3.9419 -1.1370 -2.1870 44 1 3.8565 0.4346 -1.3565 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336425389.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:14 Heat of formation + Delta-G solvation = -81.818244 kcal Electronic energy + Delta-G solvation = -24084.145911 eV Core-core repulsion = 20808.356707 eV Total energy + Delta-G solvation = -3275.789204 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.22020 -39.07955 -37.07519 -35.04711 -33.20702 -32.59206 -31.50328 -29.18110 -27.58379 -27.28386 -25.85458 -24.74421 -23.20332 -21.93457 -20.63662 -18.75279 -17.59400 -16.99670 -16.78691 -16.18550 -15.76736 -15.42960 -14.94392 -14.70877 -14.21227 -14.08981 -13.82653 -13.59387 -13.01970 -12.86417 -12.66266 -12.56959 -12.39159 -12.23245 -12.15381 -11.99458 -11.80554 -11.65083 -11.51747 -11.39374 -11.36207 -10.93964 -10.78636 -10.62828 -10.54771 -10.19160 -10.12432 -9.56465 -9.39721 -8.91138 -8.61852 -7.70638 -6.11968 -4.11001 1.84957 3.26816 3.27477 3.32890 3.34895 3.76278 3.95808 4.36805 4.37248 4.53265 4.65288 4.85042 4.92291 4.98218 5.12660 5.16732 5.22246 5.26750 5.35438 5.41719 5.48814 5.55006 5.62583 5.66810 5.70956 5.76675 5.79868 5.87961 5.89931 5.98975 6.01657 6.11778 6.18338 6.23956 6.31993 6.47432 6.67356 6.92785 7.30988 7.37708 7.57880 8.22208 8.43701 8.89347 8.96319 9.48544 11.01359 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.028685 B = 0.004903 C = 0.004764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.898323 B = 5708.873910 C = 5876.184300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.127 4.127 3 H 0.095 0.905 4 C 0.371 3.629 5 O -0.462 6.462 6 C -0.169 4.169 7 C -0.102 4.102 8 C -0.109 4.109 9 H 0.096 0.904 10 C 0.519 3.481 11 O -0.538 6.538 12 N -0.595 5.595 13 C 0.076 3.924 14 C 0.215 3.785 15 C -0.530 4.530 16 H 0.074 0.926 17 C 0.073 3.927 18 N -0.897 5.897 19 Si 0.876 3.124 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.266 1.266 23 C -0.038 4.038 24 C -0.151 4.151 25 C -0.152 4.152 26 H 0.058 0.942 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.099 0.901 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.050 0.950 34 H 0.075 0.925 35 H 0.060 0.940 36 H 0.029 0.971 37 H 0.037 0.963 38 H 0.265 0.735 39 H 0.058 0.942 40 H 0.065 0.935 41 H 0.067 0.933 42 H 0.056 0.944 43 H 0.077 0.923 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.170 15.785 8.429 18.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.147 4.147 3 H 0.114 0.886 4 C 0.247 3.753 5 O -0.335 6.335 6 C -0.207 4.207 7 C -0.140 4.140 8 C -0.130 4.130 9 H 0.114 0.886 10 C 0.306 3.694 11 O -0.416 6.416 12 N -0.327 5.327 13 C -0.067 4.067 14 C 0.094 3.906 15 C -0.568 4.568 16 H 0.092 0.908 17 C -0.130 4.130 18 N -0.536 5.536 19 Si 0.703 3.297 20 H -0.199 1.199 21 H -0.211 1.211 22 H -0.191 1.191 23 C -0.039 4.039 24 C -0.208 4.208 25 C -0.209 4.209 26 H 0.077 0.923 27 H 0.093 0.907 28 H 0.085 0.915 29 H 0.117 0.883 30 H 0.109 0.891 31 H 0.102 0.898 32 H 0.100 0.900 33 H 0.069 0.931 34 H 0.094 0.906 35 H 0.078 0.922 36 H 0.047 0.953 37 H 0.055 0.945 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.075 0.925 43 H 0.096 0.904 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.253 15.712 8.707 18.256 hybrid contribution 0.171 -0.062 -0.944 0.961 sum -3.082 15.650 7.763 17.740 Atomic orbital electron populations 1.21861 0.92590 1.03048 1.02870 1.22001 0.97902 1.00674 0.94082 0.88631 1.24894 0.73603 0.91366 0.85468 1.90386 1.32460 1.70694 1.40004 1.22335 1.04004 0.93925 1.00387 1.21445 1.01862 1.00241 0.90406 1.21554 1.02159 0.94744 0.94526 0.88604 1.20047 0.85708 0.79478 0.84159 1.90647 1.18798 1.51954 1.80157 1.47820 1.11166 1.52684 1.20995 1.21885 0.84747 0.98373 1.01738 1.19668 0.96640 0.91659 0.82642 1.21329 1.42608 0.89487 1.03385 0.90796 1.24856 0.94959 0.94711 0.98448 1.69899 1.48189 1.00988 1.34508 0.86852 0.80328 0.78868 0.83649 1.19908 1.21083 1.19076 1.20379 0.96687 0.92650 0.94147 1.22158 1.01262 1.00573 0.96827 1.22068 0.93600 1.01494 1.03736 0.92274 0.90740 0.91483 0.88266 0.89085 0.89785 0.89998 0.93126 0.90594 0.92150 0.95323 0.94480 0.92547 0.92294 0.91622 0.91398 0.92479 0.90390 0.92765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 8.39 37.16 0.31 -0.81 16 2 C -0.13 -1.28 2.23 -91.37 -0.20 -1.48 16 3 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 4 C 0.37 4.39 5.09 -28.47 -0.14 4.25 16 5 O -0.46 -6.88 17.89 6.00 0.11 -6.78 16 6 C -0.17 -1.79 5.90 -27.48 -0.16 -1.96 16 7 C -0.10 -1.34 4.60 -26.64 -0.12 -1.46 16 8 C -0.11 -1.46 1.26 -91.81 -0.12 -1.57 16 9 H 0.10 1.09 3.93 -51.93 -0.20 0.89 16 10 C 0.52 9.70 4.98 -10.99 -0.05 9.65 16 11 O -0.54 -12.30 14.43 5.56 0.08 -12.21 16 12 N -0.60 -11.39 2.66 -182.96 -0.49 -11.88 16 13 C 0.08 1.07 9.10 59.85 0.54 1.61 16 14 C 0.21 5.05 4.24 -5.19 -0.02 5.03 16 15 C -0.53 -14.80 9.94 -34.44 -0.34 -15.14 16 16 H 0.07 2.26 8.06 -52.48 -0.42 1.84 16 17 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 18 N -0.90 -27.27 13.96 55.43 0.77 -26.50 16 19 Si 0.88 21.24 27.47 -169.99 -4.67 16.57 16 20 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 22 H -0.27 -6.05 6.54 56.52 0.37 -5.68 16 23 C -0.04 -0.44 0.32 -154.41 -0.05 -0.49 16 24 C -0.15 -1.60 6.11 37.15 0.23 -1.37 16 25 C -0.15 -2.00 7.52 37.16 0.28 -1.72 16 26 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.07 0.49 6.55 -51.93 -0.34 0.15 16 28 H 0.07 0.48 6.00 -51.93 -0.31 0.17 16 29 H 0.10 0.84 7.82 -51.93 -0.41 0.44 16 30 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.08 1.23 6.04 -51.93 -0.31 0.91 16 32 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 33 H 0.05 0.57 5.93 -51.93 -0.31 0.27 16 34 H 0.08 1.12 8.03 -51.93 -0.42 0.70 16 35 H 0.06 0.69 5.85 -51.93 -0.30 0.39 16 36 H 0.03 0.65 7.13 -51.93 -0.37 0.27 16 37 H 0.04 0.94 6.79 -51.93 -0.35 0.59 16 38 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.85 7.11 -51.93 -0.37 0.48 16 41 H 0.07 0.60 4.75 -51.93 -0.25 0.36 16 42 H 0.06 0.78 5.60 -51.93 -0.29 0.48 16 43 H 0.08 1.23 6.40 -51.93 -0.33 0.89 16 44 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 325.45 15.07 4.90 4.90 Total: -1.00 -33.71 325.45 -5.94 -39.65 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -6.69 Total: -0.27 kcal Atomic # 6 Polarization: -3.53 SS G_CDS: 0.05 Total: -3.49 kcal Atomic # 7 Polarization: -38.66 SS G_CDS: 0.29 Total: -38.38 kcal Atomic # 8 Polarization: -19.18 SS G_CDS: 0.19 Total: -18.99 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.67 Total: 16.57 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -33.71 -5.94 -39.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336425389.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.169 kcal (2) G-P(sol) polarization free energy of solvation -33.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds