Wall clock time and date at job start Tue Mar 31 2020 06:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.43431 * 114.00143 * 2 1 4 4 H 1.10158 * 110.10754 * 32.67241 * 3 2 1 5 5 C 1.60040 * 113.01340 * 266.45669 * 3 2 1 6 6 H 1.09808 * 117.73333 * 68.69561 * 5 3 2 7 7 C 1.57982 * 106.50420 * 202.31717 * 5 3 2 8 8 C 1.56990 * 110.18807 * 67.02240 * 7 5 3 9 9 H 1.10198 * 115.55793 * 124.98806 * 8 7 5 10 10 C 1.58167 * 108.73218 * 256.64842 * 8 7 5 11 11 N 1.53388 * 106.05045 * 94.53605 * 10 8 7 12 12 C 1.46877 * 110.27710 * 212.08517 * 11 10 8 13 13 C 1.52998 * 109.46907 * 176.03888 * 12 11 10 14 14 O 1.42903 * 109.47175 * 65.12564 * 13 12 11 15 15 C 1.42898 * 113.99801 * 175.13049 * 14 13 12 16 16 C 1.50709 * 109.47014 * 184.86379 * 15 14 13 17 17 H 1.08003 * 119.99602 * 4.91333 * 16 15 14 18 18 C 1.37866 * 120.00259 * 184.91153 * 16 15 14 19 19 N 1.31518 * 120.00076 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00313 * 179.97438 * 18 16 15 21 21 H 1.48510 * 109.47097 * 89.99970 * 20 18 16 22 22 H 1.48499 * 109.47482 * 209.99801 * 20 18 16 23 23 H 1.48494 * 109.47185 * 330.00368 * 20 18 16 24 24 C 1.43044 * 88.02503 * 322.98435 * 11 10 8 25 25 H 1.06858 * 85.48104 * 330.12292 * 24 11 10 26 26 C 1.59633 * 99.04571 * 359.91355 * 8 7 5 27 27 H 1.10106 * 121.31278 * 170.26031 * 26 8 7 28 28 C 1.56668 * 102.34761 * 34.19206 * 26 8 7 29 29 H 1.09004 * 109.47232 * 304.82868 * 1 2 3 30 30 H 1.09008 * 109.47124 * 64.82283 * 1 2 3 31 31 H 1.08998 * 109.47514 * 184.82831 * 1 2 3 32 32 H 1.09519 * 108.63897 * 186.16629 * 7 5 3 33 33 H 1.08641 * 110.10923 * 304.67198 * 7 5 3 34 34 H 1.09626 * 109.62633 * 211.42824 * 10 8 7 35 35 H 1.08336 * 112.27314 * 332.97298 * 10 8 7 36 36 H 1.09004 * 109.46241 * 296.03872 * 12 11 10 37 37 H 1.08998 * 109.47222 * 56.03328 * 12 11 10 38 38 H 1.09001 * 109.46857 * 185.11687 * 13 12 11 39 39 H 1.08990 * 109.47462 * 305.11924 * 13 12 11 40 40 H 1.09003 * 109.47225 * 304.86165 * 15 14 13 41 41 H 1.08994 * 109.47280 * 64.86770 * 15 14 13 42 42 H 0.96998 * 120.00331 * 180.02562 * 19 18 16 43 43 H 1.08980 * 112.29988 * 185.89846 * 28 26 8 44 44 H 1.09265 * 111.88563 * 60.48710 * 28 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0124 1.3103 0.0000 4 1 1.3710 2.0104 0.5584 5 6 2.3501 1.8448 -1.4702 6 1 1.5078 2.0827 -2.1334 7 6 3.4629 2.9532 -1.3002 8 6 4.8008 2.3048 -0.7959 9 1 5.6893 2.5044 -1.4164 10 6 4.9659 2.6151 0.7463 11 7 4.3883 1.4025 1.4870 12 6 3.7908 1.8218 2.7616 13 6 3.1344 0.6166 3.4380 14 8 4.1385 -0.3374 3.7898 15 6 3.6437 -1.4563 4.5284 16 6 4.7970 -2.3316 4.9469 17 1 5.8116 -2.0209 4.7454 18 6 4.5569 -3.5289 5.5869 19 7 3.3215 -3.9070 5.8327 20 14 5.9863 -4.6141 6.1049 21 1 6.4118 -4.2493 7.4802 22 1 5.5623 -6.0371 6.0790 23 1 7.1213 -4.4187 5.1675 24 6 3.3841 1.3228 0.4715 25 1 3.5012 2.3818 0.3911 26 6 4.3248 0.7837 -0.7076 27 1 5.0438 -0.0317 -0.5332 28 6 3.3191 0.6773 -1.9041 29 1 -0.3634 0.5869 0.8436 30 1 -0.3634 0.4372 -0.9301 31 1 -0.3634 -1.0240 0.0865 32 1 3.6421 3.4216 -2.2738 33 1 3.1240 3.7199 -0.6091 34 1 6.0307 2.6978 0.9933 35 1 4.4607 3.5281 1.0378 36 1 4.5674 2.2251 3.4115 37 1 3.0385 2.5883 2.5754 38 1 2.6134 0.9441 4.3377 39 1 2.4221 0.1583 2.7521 40 1 3.1162 -1.1023 5.4142 41 1 2.9600 -2.0305 3.9034 42 1 3.1526 -4.7492 6.2833 43 1 2.8108 -0.2863 -1.9327 44 1 3.8007 0.8917 -2.8612 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339191894.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:40 Heat of formation + Delta-G solvation = 89.270509 kcal Electronic energy + Delta-G solvation = -23448.806217 eV Core-core repulsion = 20180.435978 eV Total energy + Delta-G solvation = -3268.370239 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.27506 -37.56994 -36.71021 -35.14970 -32.62289 -30.94570 -29.23070 -28.25786 -27.19110 -26.38813 -25.68442 -24.26625 -22.23695 -21.73642 -20.33574 -19.74457 -18.74574 -16.62278 -16.45040 -16.16412 -15.83105 -15.42639 -15.25006 -14.92179 -14.24638 -14.18527 -14.00143 -13.72337 -13.35885 -12.84689 -12.49311 -12.41611 -11.87552 -11.66094 -11.45732 -11.37735 -11.19502 -11.06799 -11.05487 -10.77947 -10.70097 -10.62450 -10.50996 -10.45130 -10.23904 -9.89165 -9.44397 -9.25422 -8.98334 -8.67464 -8.19874 -7.99766 -6.00016 -4.00575 3.37488 3.41975 3.43996 3.48842 3.62774 4.19437 4.28349 4.40803 4.44447 4.51306 4.65956 4.79995 4.93302 4.99098 5.04611 5.11852 5.26217 5.30962 5.32915 5.36487 5.38776 5.50011 5.59035 5.65807 5.70500 5.72827 5.74350 5.78373 5.91996 5.96299 6.05804 6.07997 6.17178 6.21274 6.32868 6.48378 6.69557 7.19082 7.23446 7.39738 7.58771 7.91775 8.29184 8.75200 9.14380 9.63793 11.11776 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.021385 B = 0.004291 C = 0.004023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.996574 B = 6523.329257 C = 6959.090159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.362 6.362 3 C 0.141 3.859 4 H 0.064 0.936 5 C -0.128 4.128 6 H 0.111 0.889 7 C -0.112 4.112 8 C -0.107 4.107 9 H 0.098 0.902 10 C -0.004 4.004 11 N -0.394 5.394 12 C 0.022 3.978 13 C 0.074 3.926 14 O -0.380 6.380 15 C 0.195 3.805 16 C -0.508 4.508 17 H 0.066 0.934 18 C 0.055 3.945 19 N -0.901 5.901 20 Si 0.907 3.093 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.271 1.271 24 C -0.056 4.056 25 H 0.064 0.936 26 C -0.074 4.074 27 H 0.129 0.871 28 C -0.118 4.118 29 H 0.039 0.961 30 H 0.037 0.963 31 H 0.086 0.914 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.077 0.923 35 H 0.059 0.941 36 H 0.082 0.918 37 H 0.039 0.961 38 H 0.036 0.964 39 H 0.040 0.960 40 H -0.003 1.003 41 H 0.008 0.992 42 H 0.262 0.738 43 H 0.079 0.921 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.187 15.748 -16.390 23.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.280 6.280 3 C 0.082 3.918 4 H 0.082 0.918 5 C -0.147 4.147 6 H 0.129 0.871 7 C -0.150 4.150 8 C -0.126 4.126 9 H 0.116 0.884 10 C -0.131 4.131 11 N -0.116 5.116 12 C -0.107 4.107 13 C -0.004 4.004 14 O -0.299 6.299 15 C 0.120 3.880 16 C -0.547 4.547 17 H 0.084 0.916 18 C -0.145 4.145 19 N -0.540 5.540 20 Si 0.734 3.266 21 H -0.206 1.206 22 H -0.211 1.211 23 H -0.196 1.196 24 C -0.165 4.165 25 H 0.082 0.918 26 C -0.093 4.093 27 H 0.147 0.853 28 C -0.155 4.155 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.104 0.896 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.096 0.904 35 H 0.077 0.923 36 H 0.101 0.899 37 H 0.057 0.943 38 H 0.054 0.946 39 H 0.058 0.942 40 H 0.015 0.985 41 H 0.026 0.974 42 H 0.072 0.928 43 H 0.098 0.902 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.529 14.947 -16.149 22.286 hybrid contribution -0.555 0.452 0.572 0.916 sum -4.084 15.399 -15.577 22.282 Atomic orbital electron populations 1.22787 0.81889 1.02907 0.99370 1.88258 1.18897 1.26544 1.94307 1.22309 0.90377 0.85217 0.93896 0.91832 1.25516 0.96736 0.96421 0.96049 0.87064 1.23358 0.93814 0.96857 1.00954 1.25503 0.96262 0.97107 0.93715 0.88365 1.25221 1.01527 0.92584 0.93788 1.69886 1.16872 1.25922 0.98871 1.22581 0.98551 0.96470 0.93086 1.22075 0.91632 0.90124 0.96604 1.87932 1.32748 1.34017 1.75201 1.20169 0.95611 0.82755 0.89438 1.21077 0.93466 1.03290 1.36829 0.91578 1.24938 0.96162 0.97449 0.95998 1.69973 1.18919 1.22757 1.42391 0.86357 0.82129 0.79234 0.78886 1.20593 1.21143 1.19592 1.22812 0.93386 1.03835 0.96483 0.91820 1.25562 0.96541 0.94686 0.92491 0.85321 1.23483 0.96190 0.98603 0.97234 0.94247 0.94449 0.89580 0.91879 0.92360 0.90414 0.92317 0.89925 0.94263 0.94556 0.94195 0.98505 0.97444 0.92819 0.90226 0.91635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.94 101.05 1.11 1.41 16 2 O -0.36 -5.41 9.55 -35.23 -0.34 -5.75 16 3 C 0.14 1.81 3.32 -26.49 -0.09 1.72 16 4 H 0.06 0.74 7.89 -51.27 -0.40 0.34 16 5 C -0.13 -1.26 5.62 -81.28 -0.46 -1.72 16 6 H 0.11 0.88 8.21 -51.47 -0.42 0.46 16 7 C -0.11 -1.01 5.23 -21.84 -0.11 -1.13 16 8 C -0.11 -1.13 5.03 -81.89 -0.41 -1.55 16 9 H 0.10 0.89 8.24 -51.25 -0.42 0.46 16 10 C 0.00 -0.04 5.77 0.42 0.00 -0.04 16 11 N -0.39 -6.53 5.91 -281.63 -1.66 -8.19 16 12 C 0.02 0.36 5.12 -3.84 -0.02 0.34 16 13 C 0.07 1.53 6.16 37.16 0.23 1.75 16 14 O -0.38 -9.98 10.28 -35.23 -0.36 -10.35 16 15 C 0.19 5.71 5.70 36.01 0.21 5.91 16 16 C -0.51 -15.76 9.43 -34.44 -0.32 -16.09 16 17 H 0.07 2.04 7.81 -52.48 -0.41 1.63 16 18 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 19 N -0.90 -27.99 13.29 55.43 0.74 -27.25 16 20 Si 0.91 22.69 29.54 -169.99 -5.02 17.67 16 21 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 24 C -0.06 -0.81 3.15 -71.77 -0.23 -1.04 16 25 H 0.06 0.79 1.23 -138.38 -0.17 0.62 16 26 C -0.07 -1.00 5.80 -80.87 -0.47 -1.46 16 27 H 0.13 1.95 8.23 -51.30 -0.42 1.53 16 28 C -0.12 -1.32 6.15 -22.12 -0.14 -1.46 16 29 H 0.04 0.41 7.99 -51.93 -0.41 0.00 16 30 H 0.04 0.33 8.14 -51.92 -0.42 -0.09 16 31 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.06 0.47 8.19 -51.64 -0.42 0.05 16 33 H 0.06 0.50 7.02 -52.13 -0.37 0.14 16 34 H 0.08 0.94 8.19 -51.57 -0.42 0.51 16 35 H 0.06 0.63 6.93 -52.30 -0.36 0.27 16 36 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 37 H 0.04 0.54 7.73 -51.93 -0.40 0.14 16 38 H 0.04 0.71 8.12 -51.93 -0.42 0.29 16 39 H 0.04 0.85 7.76 -51.93 -0.40 0.45 16 40 H 0.00 -0.08 8.12 -51.93 -0.42 -0.50 16 41 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 42 H 0.26 7.60 8.31 -40.82 -0.34 7.27 16 43 H 0.08 1.01 7.39 -51.94 -0.38 0.63 16 44 H 0.07 0.63 8.16 -51.78 -0.42 0.21 16 LS Contribution 340.84 15.07 5.14 5.14 Total: -1.00 -34.34 340.84 -9.83 -44.17 By element: Atomic # 1 Polarization: 3.86 SS G_CDS: -7.52 Total: -3.66 kcal Atomic # 6 Polarization: -10.98 SS G_CDS: -0.80 Total: -11.79 kcal Atomic # 7 Polarization: -34.52 SS G_CDS: -0.93 Total: -35.45 kcal Atomic # 8 Polarization: -15.39 SS G_CDS: -0.70 Total: -16.09 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.67 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -34.34 -9.83 -44.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339191894.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.440 kcal (2) G-P(sol) polarization free energy of solvation -34.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds