Wall clock time and date at job start Tue Mar 31 2020 06:23:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99979 * 2 1 4 4 H 1.09001 * 110.43374 * 31.07503 * 3 2 1 5 5 C 1.55455 * 110.48352 * 153.74750 * 3 2 1 6 6 H 1.08996 * 113.25937 * 348.11155 * 5 3 2 7 7 C 1.56117 * 104.35408 * 111.73535 * 5 3 2 8 8 H 1.08996 * 116.41733 * 204.22268 * 7 5 3 9 9 C 1.56233 * 102.65930 * 332.49622 * 7 5 3 10 10 C 1.55791 * 110.48172 * 268.54410 * 3 2 1 11 11 H 1.09001 * 115.98869 * 46.01627 * 10 3 2 12 12 C 1.55991 * 104.37648 * 175.69456 * 10 3 2 13 13 C 1.54777 * 105.15092 * 70.62925 * 12 10 3 14 14 H 1.09007 * 114.25031 * 124.52548 * 13 12 10 15 15 C 1.54361 * 108.48318 * 252.41276 * 13 12 10 16 16 N 1.47212 * 106.06326 * 74.97809 * 15 13 12 17 17 C 1.46901 * 110.99854 * 135.34632 * 16 15 13 18 18 C 1.53004 * 109.47260 * 48.80972 * 17 16 15 19 19 O 1.42891 * 109.46948 * 65.00126 * 18 17 16 20 20 C 1.42901 * 114.00274 * 179.97438 * 19 18 17 21 21 C 1.50693 * 109.47761 * 180.02562 * 20 19 18 22 22 H 1.08001 * 119.99991 * 0.02562 * 21 20 19 23 23 C 1.37870 * 120.00412 * 180.02562 * 21 20 19 24 24 N 1.31510 * 120.00084 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 120.00323 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47167 * 60.00057 * 25 23 21 27 27 H 1.48502 * 109.47323 * 180.02562 * 25 23 21 28 28 H 1.48505 * 109.46972 * 300.00060 * 25 23 21 29 29 H 1.09002 * 109.47382 * 300.00227 * 1 2 3 30 30 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46926 * 60.00334 * 1 2 3 32 32 H 1.08999 * 111.98824 * 293.59375 * 9 7 5 33 33 H 1.09000 * 111.98644 * 167.18114 * 9 7 5 34 34 H 1.09004 * 110.30091 * 189.54866 * 12 10 3 35 35 H 1.08996 * 110.30452 * 311.71082 * 12 10 3 36 36 H 1.09001 * 110.13223 * 315.83230 * 15 13 12 37 37 H 1.08998 * 110.19020 * 194.16106 * 15 13 12 38 38 H 1.09002 * 109.47424 * 168.81331 * 17 16 15 39 39 H 1.09009 * 109.46988 * 288.80987 * 17 16 15 40 40 H 1.09001 * 109.46947 * 185.00133 * 18 17 16 41 41 H 1.08994 * 109.46905 * 305.00215 * 18 17 16 42 42 H 1.08997 * 109.46720 * 300.00311 * 20 19 18 43 43 H 1.09003 * 109.46503 * 59.99611 * 20 19 18 44 44 H 0.97001 * 120.00670 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3658 2.0089 0.5272 5 6 3.4246 1.2712 0.6441 6 1 3.6405 0.3352 1.1592 7 6 4.3973 1.5607 -0.5422 8 1 5.4184 1.1956 -0.4322 9 6 3.6001 1.0291 -1.7762 10 6 2.2658 1.7884 -1.4590 11 1 1.4466 1.6383 -2.1622 12 6 2.7877 3.2495 -1.2975 13 6 4.2045 3.1083 -0.6907 14 1 4.9895 3.5971 -1.2678 15 6 4.1516 3.5565 0.7855 16 7 3.4898 2.4651 1.5190 17 6 4.2009 2.1638 2.7687 18 6 4.4672 3.4639 3.5302 19 8 3.2246 4.0432 3.9326 20 6 3.3614 5.2680 4.6559 21 6 1.9965 5.7867 5.0286 22 1 1.1128 5.2359 4.7421 23 6 1.8758 6.9643 5.7353 24 7 2.9518 7.6354 6.0837 25 14 0.1838 7.6076 6.1966 26 1 -0.5117 6.6071 7.0454 27 1 0.3261 8.8810 6.9473 28 1 -0.6081 7.8465 4.9632 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 -0.8901 32 1 3.4716 -0.0528 -1.7438 33 1 4.0410 1.3552 -2.7182 34 1 2.8393 3.7421 -2.2685 35 1 2.1410 3.8096 -0.6221 36 1 3.5729 4.4755 0.8780 37 1 5.1605 3.7086 1.1689 38 1 3.5912 1.5012 3.3830 39 1 5.1486 1.6765 2.5390 40 1 5.0715 3.2511 4.4121 41 1 5.0006 4.1608 2.8837 42 1 3.9426 5.0923 5.5612 43 1 3.8721 6.0025 4.0332 44 1 2.8670 8.4641 6.5806 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339191896.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:44 Heat of formation + Delta-G solvation = -92.962885 kcal Electronic energy + Delta-G solvation = -23242.130462 eV Core-core repulsion = 19965.857990 eV Total energy + Delta-G solvation = -3276.272472 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.42854 -38.91378 -38.09987 -36.22866 -34.84102 -31.95678 -31.12280 -29.49566 -28.98244 -27.63991 -26.46974 -25.71871 -24.48630 -22.73389 -21.13416 -20.80552 -19.92399 -18.64467 -18.02630 -17.51424 -17.25552 -16.88159 -16.45884 -16.19585 -15.71245 -15.32542 -15.19627 -15.01674 -14.79832 -14.31169 -13.86674 -13.72247 -13.41715 -13.25772 -12.88149 -12.73912 -12.70771 -12.39091 -12.30194 -12.27776 -12.11232 -12.08618 -11.70564 -11.57722 -11.50884 -11.45782 -11.35294 -11.28061 -10.85461 -10.36557 -10.19246 -9.17098 -8.32698 -6.44898 1.38231 1.43161 1.51591 2.33934 2.59673 3.00835 3.10698 3.25709 3.37816 3.53862 3.56292 3.99925 4.08069 4.16235 4.18078 4.26477 4.33452 4.37073 4.40232 4.41800 4.50413 4.54750 4.57611 4.65749 4.71800 4.74847 4.81420 4.85244 4.88619 4.93480 5.02001 5.09388 5.14745 5.16229 5.17764 5.20986 5.32249 5.47293 5.53991 5.96102 6.07257 6.13625 6.35261 6.55190 6.84040 7.27269 8.79493 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.020441 B = 0.004151 C = 0.003874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.437320 B = 6744.281349 C = 7225.473330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.399 6.399 3 C 0.094 3.906 4 H 0.052 0.948 5 C 0.072 3.928 6 H 0.095 0.905 7 C -0.116 4.116 8 H 0.116 0.884 9 C -0.101 4.101 10 C -0.120 4.120 11 H 0.108 0.892 12 C -0.110 4.110 13 C -0.099 4.099 14 H 0.115 0.885 15 C 0.048 3.952 16 N -0.533 5.533 17 C 0.066 3.934 18 C 0.052 3.948 19 O -0.396 6.396 20 C 0.211 3.789 21 C -0.547 4.547 22 H 0.058 0.942 23 C 0.008 3.992 24 N -0.930 5.930 25 Si 0.981 3.019 26 H -0.266 1.266 27 H -0.273 1.273 28 H -0.266 1.266 29 H 0.031 0.969 30 H 0.101 0.899 31 H 0.050 0.950 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.049 0.951 36 H 0.052 0.948 37 H 0.053 0.947 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.047 0.953 41 H 0.044 0.956 42 H -0.017 1.017 43 H -0.017 1.017 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.027 -14.120 -17.719 22.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.318 6.318 3 C 0.036 3.964 4 H 0.070 0.930 5 C -0.036 4.036 6 H 0.113 0.887 7 C -0.136 4.136 8 H 0.134 0.866 9 C -0.138 4.138 10 C -0.138 4.138 11 H 0.126 0.874 12 C -0.147 4.147 13 C -0.117 4.117 14 H 0.133 0.867 15 C -0.080 4.080 16 N -0.257 5.257 17 C -0.062 4.062 18 C -0.025 4.025 19 O -0.316 6.316 20 C 0.136 3.864 21 C -0.585 4.585 22 H 0.076 0.924 23 C -0.190 4.190 24 N -0.570 5.570 25 Si 0.804 3.196 26 H -0.191 1.191 27 H -0.197 1.197 28 H -0.191 1.191 29 H 0.050 0.950 30 H 0.119 0.881 31 H 0.068 0.932 32 H 0.092 0.908 33 H 0.106 0.894 34 H 0.101 0.899 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.065 0.935 41 H 0.062 0.938 42 H 0.001 0.999 43 H 0.000 1.000 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.510 -14.045 -17.481 22.475 hybrid contribution 0.195 0.826 0.776 1.150 sum 1.705 -13.219 -16.704 21.370 Atomic orbital electron populations 1.22877 0.80248 1.03503 1.00111 1.87782 1.20699 1.28286 1.94997 1.23649 0.93880 0.83523 0.95389 0.92955 1.23686 0.94081 0.93023 0.92857 0.88724 1.24327 0.98941 0.95118 0.95169 0.86635 1.23201 0.93728 0.99697 0.97219 1.23941 0.98802 0.95118 0.95951 0.87377 1.22592 0.95113 0.96058 1.00981 1.23257 0.98217 0.95669 0.94593 0.86693 1.22898 0.97082 0.94484 0.93495 1.63485 1.51608 1.06288 1.04368 1.22187 0.97826 0.95224 0.90973 1.22735 0.87290 0.95025 0.97433 1.87912 1.29261 1.39597 1.74789 1.19773 0.96682 0.81110 0.88874 1.21323 0.92876 1.07894 1.36361 0.92402 1.25931 1.02159 0.96042 0.94882 1.70057 1.30750 1.16831 1.39330 0.85264 0.77904 0.77704 0.78717 1.19062 1.19747 1.19123 0.95008 0.88104 0.93175 0.90792 0.89359 0.89886 0.93215 0.92983 0.92922 0.90940 0.90951 0.93532 0.93790 0.99935 0.99956 0.92024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 10.87 113.37 1.23 1.82 16 2 O -0.40 -10.16 10.34 -148.98 -1.54 -11.70 16 3 C 0.09 2.45 2.37 32.40 0.08 2.52 16 4 H 0.05 1.68 7.35 -2.39 -0.02 1.66 16 5 C 0.07 1.83 3.54 46.60 0.16 1.99 16 6 H 0.09 2.41 7.85 -2.39 -0.02 2.39 16 7 C -0.12 -2.26 4.96 -7.31 -0.04 -2.30 16 8 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16 9 C -0.10 -1.73 6.42 33.03 0.21 -1.52 16 10 C -0.12 -2.44 4.92 -7.48 -0.04 -2.48 16 11 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 12 C -0.11 -2.38 5.77 32.24 0.19 -2.19 16 13 C -0.10 -2.09 4.28 -8.45 -0.04 -2.13 16 14 H 0.12 1.97 8.14 -2.38 -0.02 1.95 16 15 C 0.05 1.39 4.83 86.71 0.42 1.81 16 16 N -0.53 -16.65 4.50 -853.05 -3.84 -20.49 16 17 C 0.07 2.05 5.32 86.30 0.46 2.51 16 18 C 0.05 2.02 5.71 71.98 0.41 2.44 16 19 O -0.40 -20.32 10.27 -148.98 -1.53 -21.85 16 20 C 0.21 12.29 5.69 71.23 0.41 12.69 16 21 C -0.55 -33.69 9.43 25.60 0.24 -33.45 16 22 H 0.06 3.56 7.81 -2.91 -0.02 3.54 16 23 C 0.01 0.49 5.46 84.65 0.46 0.95 16 24 N -0.93 -56.92 13.29 21.44 0.28 -56.63 16 25 Si 0.98 45.37 29.54 68.60 2.03 47.40 16 26 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 27 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 28 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 29 H 0.03 0.71 8.10 -2.39 -0.02 0.69 16 30 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 32 H 0.07 1.31 8.08 -2.39 -0.02 1.29 16 33 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.05 1.36 7.21 -2.39 -0.02 1.34 16 36 H 0.05 1.83 7.80 -2.39 -0.02 1.81 16 37 H 0.05 1.46 6.29 -2.39 -0.02 1.45 16 38 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 39 H 0.07 1.79 8.08 -2.38 -0.02 1.77 16 40 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.04 1.66 5.99 -2.39 -0.01 1.64 16 42 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 43 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 44 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -69.73 341.27 0.52 -69.21 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: 0.95 Total: 11.39 kcal Atomic # 6 Polarization: -21.49 SS G_CDS: 4.16 Total: -17.33 kcal Atomic # 7 Polarization: -73.57 SS G_CDS: -3.55 Total: -77.12 kcal Atomic # 8 Polarization: -30.48 SS G_CDS: -3.07 Total: -33.55 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -69.73 0.52 -69.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339191896.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.750 kcal (2) G-P(sol) polarization free energy of solvation -69.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds