Wall clock time and date at job start Tue Mar 31 2020 05:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42898 * 109.47653 * 2 1 4 4 C 1.42896 * 114.00462 * 184.27189 * 3 2 1 5 5 C 1.50705 * 110.01122 * 303.36258 * 4 3 2 6 6 O 1.21279 * 119.99862 * 142.34600 * 5 4 3 7 7 N 1.34775 * 119.99952 * 322.33419 * 5 4 3 8 8 C 1.46500 * 119.99807 * 184.18688 * 7 5 4 9 9 C 1.53004 * 109.47220 * 184.80871 * 8 7 5 10 10 C 1.50702 * 115.54738 * 273.45908 * 9 8 7 11 11 H 1.07999 * 119.99611 * 115.42110 * 10 9 8 12 12 C 1.37876 * 120.00354 * 295.42140 * 10 9 8 13 13 N 1.31516 * 119.99586 * 353.23973 * 12 10 9 14 14 Si 1.86792 * 120.00150 * 173.24126 * 12 10 9 15 15 H 1.48499 * 109.47155 * 89.99996 * 14 12 10 16 16 H 1.48507 * 109.47282 * 209.99857 * 14 12 10 17 17 H 1.48496 * 109.47210 * 329.99810 * 14 12 10 18 18 C 1.52999 * 117.50077 * 127.74969 * 9 8 7 19 19 C 1.52999 * 117.49753 * 59.12604 * 9 8 7 20 20 C 1.54262 * 110.03015 * 64.74991 * 4 3 2 21 21 C 1.54963 * 104.16045 * 95.75929 * 20 4 3 22 22 C 1.54893 * 102.77677 * 37.88537 * 21 20 4 23 23 C 1.53874 * 110.03317 * 181.96883 * 4 3 2 24 24 H 1.08997 * 109.47716 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.47298 * 300.00595 * 1 2 3 26 26 H 1.09006 * 109.46623 * 59.99999 * 1 2 3 27 27 H 1.08992 * 109.47298 * 239.99405 * 2 1 3 28 28 H 1.09006 * 109.46623 * 120.00001 * 2 1 3 29 29 H 0.96996 * 120.00251 * 4.18900 * 7 5 4 30 30 H 1.09003 * 109.47460 * 64.80874 * 8 7 5 31 31 H 1.08996 * 109.47347 * 304.80843 * 8 7 5 32 32 H 0.97005 * 119.99762 * 185.03125 * 13 12 10 33 33 H 1.08999 * 117.49873 * 0.02562 * 18 9 8 34 34 H 1.09000 * 117.49586 * 145.02207 * 18 9 8 35 35 H 1.08998 * 117.49610 * 214.98246 * 19 9 8 36 36 H 1.09000 * 117.49782 * 359.97438 * 19 9 8 37 37 H 1.09007 * 110.48295 * 214.40731 * 20 4 3 38 38 H 1.09001 * 110.48864 * 337.04626 * 20 4 3 39 39 H 1.08997 * 110.71975 * 279.57040 * 21 20 4 40 40 H 1.08997 * 110.92474 * 156.29408 * 21 20 4 41 41 H 1.08998 * 110.48622 * 203.40541 * 22 21 20 42 42 H 1.09000 * 110.48505 * 80.76254 * 22 21 20 43 43 H 1.08995 * 110.03010 * 359.95298 * 23 4 3 44 44 H 1.09006 * 110.02943 * 121.37995 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4275 1.4612 -0.0972 5 6 4.0841 0.6970 1.0235 6 8 5.1134 0.0884 0.8209 7 7 3.5276 0.6900 2.2509 8 6 4.2123 0.0244 3.3619 9 6 3.3202 0.0579 4.6045 10 6 3.4389 1.2953 5.4565 11 1 2.5940 1.9593 5.5648 12 6 4.6258 1.5797 6.0977 13 7 5.6103 0.7079 6.0757 14 14 4.8357 3.2031 6.9976 15 1 4.3985 3.0472 8.4082 16 1 6.2645 3.6067 6.9639 17 1 4.0111 4.2459 6.3361 18 6 3.0525 -1.2687 5.3181 19 6 1.9430 -0.6008 4.5033 20 6 3.9091 0.9199 -1.4591 21 6 4.0198 2.1822 -2.3512 22 6 4.5632 3.2493 -1.3687 23 6 3.8427 2.9418 -0.0398 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8901 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8901 29 1 2.6737 1.1257 2.3988 30 1 5.1489 0.5404 3.5730 31 1 4.4208 -1.0109 3.0922 32 1 6.4177 0.8751 6.5868 33 1 3.5123 -2.1654 4.9026 34 1 2.9623 -1.2467 6.4041 35 1 1.1229 -0.1394 5.0534 36 1 1.6724 -1.0577 3.5515 37 1 4.8820 0.4392 -1.3561 38 1 3.1799 0.2227 -1.8720 39 1 3.0408 2.4715 -2.7331 40 1 4.7197 2.0195 -3.1707 41 1 4.3113 4.2512 -1.7163 42 1 5.6418 3.1453 -1.2509 43 1 2.9602 3.5733 0.0614 44 1 4.5192 3.1076 0.7987 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000341656526.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:21 Heat of formation + Delta-G solvation = -74.943871 kcal Electronic energy + Delta-G solvation = -23569.526444 eV Core-core repulsion = 20294.035335 eV Total energy + Delta-G solvation = -3275.491109 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.40179 -37.77568 -36.67838 -35.91355 -33.20760 -32.07027 -31.22109 -28.80470 -28.21273 -26.22609 -25.10272 -22.95783 -21.70137 -21.12619 -20.53323 -19.45558 -19.12106 -17.78404 -16.45387 -15.91457 -15.58996 -15.11618 -15.02237 -14.68275 -14.26544 -14.19184 -13.65663 -13.45093 -13.03653 -12.83450 -12.57200 -12.41785 -11.85305 -11.69210 -11.63113 -11.48929 -11.37282 -11.14415 -11.02096 -10.99827 -10.92194 -10.79622 -10.55265 -10.54296 -10.32932 -9.92129 -9.61251 -9.06895 -8.96109 -8.62991 -8.22819 -8.14388 -6.10157 -4.16868 3.03337 3.25037 3.33250 3.35643 3.53440 3.85122 4.34249 4.54125 4.61780 4.95391 5.05225 5.09646 5.20740 5.26493 5.37501 5.41301 5.43606 5.46615 5.62748 5.66263 5.71093 5.82801 5.88370 5.92979 5.98096 6.03675 6.07527 6.15822 6.24582 6.28072 6.36486 6.43219 6.59086 6.62656 6.87395 7.01948 7.13662 7.27247 7.39150 7.48473 7.82354 8.24361 8.32542 8.76743 8.85453 9.48144 10.97631 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.016962 B = 0.005679 C = 0.004919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.318799 B = 4929.460408 C = 5690.690940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.043 3.957 3 O -0.366 6.366 4 C 0.101 3.899 5 C 0.485 3.515 6 O -0.549 6.549 7 N -0.700 5.700 8 C 0.161 3.839 9 C 0.035 3.965 10 C -0.498 4.498 11 H 0.061 0.939 12 C 0.072 3.928 13 N -0.876 5.876 14 Si 0.891 3.109 15 H -0.280 1.280 16 H -0.285 1.285 17 H -0.272 1.272 18 C -0.166 4.166 19 C -0.207 4.207 20 C -0.143 4.143 21 C -0.118 4.118 22 C -0.121 4.121 23 C -0.107 4.107 24 H 0.069 0.931 25 H 0.066 0.934 26 H 0.060 0.940 27 H 0.051 0.949 28 H 0.057 0.943 29 H 0.402 0.598 30 H 0.082 0.918 31 H 0.040 0.960 32 H 0.263 0.737 33 H 0.064 0.936 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.066 0.934 37 H 0.095 0.905 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.070 0.930 42 H 0.069 0.931 43 H 0.087 0.913 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.680 1.577 -13.905 15.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.033 4.033 3 O -0.286 6.286 4 C 0.058 3.942 5 C 0.269 3.731 6 O -0.428 6.428 7 N -0.349 5.349 8 C 0.038 3.962 9 C 0.034 3.966 10 C -0.536 4.536 11 H 0.079 0.921 12 C -0.132 4.132 13 N -0.512 5.512 14 Si 0.718 3.282 15 H -0.206 1.206 16 H -0.211 1.211 17 H -0.197 1.197 18 C -0.205 4.205 19 C -0.244 4.244 20 C -0.180 4.180 21 C -0.155 4.155 22 C -0.159 4.159 23 C -0.145 4.145 24 H 0.088 0.912 25 H 0.085 0.915 26 H 0.079 0.921 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.237 0.763 30 H 0.100 0.900 31 H 0.059 0.941 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.100 0.900 35 H 0.097 0.903 36 H 0.084 0.916 37 H 0.113 0.887 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.105 0.895 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.831 1.305 -13.972 15.196 hybrid contribution -0.060 0.662 0.823 1.058 sum -5.891 1.967 -13.149 14.542 Atomic orbital electron populations 1.21709 0.93453 1.02198 1.03051 1.22649 0.95621 0.84146 1.00931 1.87979 1.19557 1.26588 1.94468 1.22442 0.81168 0.97004 0.93575 1.21020 0.85733 0.81657 0.84654 1.90647 1.24675 1.44281 1.83192 1.46227 1.24605 1.55476 1.08590 1.21072 0.96656 0.94927 0.83502 1.19070 0.90679 0.93099 0.93708 1.20438 0.97579 1.06062 1.29486 0.92069 1.24990 0.95613 0.96644 0.95980 1.69965 1.06411 1.34785 1.40017 0.86610 0.77463 0.84173 0.79942 1.20633 1.21101 1.19723 1.22726 1.02406 0.97090 0.98233 1.22869 0.93759 1.07343 1.00438 1.22918 1.03391 0.98319 0.93420 1.22436 1.01034 0.94691 0.97384 1.22350 1.00253 0.98972 0.94323 1.22107 1.01250 0.92092 0.99004 0.91223 0.91511 0.92107 0.93123 0.92493 0.76297 0.90028 0.94147 0.92749 0.91698 0.89981 0.90320 0.91574 0.88701 0.90893 0.91315 0.91371 0.91144 0.91178 0.89461 0.90188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 10.28 37.16 0.38 -1.18 16 2 C 0.04 0.56 5.94 37.16 0.22 0.78 16 3 O -0.37 -5.32 9.33 -35.23 -0.33 -5.65 16 4 C 0.10 1.54 0.95 -90.65 -0.09 1.45 16 5 C 0.49 9.31 5.35 -10.98 -0.06 9.25 16 6 O -0.55 -12.28 15.50 5.56 0.09 -12.20 16 7 N -0.70 -13.94 4.52 -60.29 -0.27 -14.21 16 8 C 0.16 3.76 5.52 -4.04 -0.02 3.74 16 9 C 0.04 0.83 1.36 -155.66 -0.21 0.62 16 10 C -0.50 -13.00 8.83 -34.44 -0.30 -13.31 16 11 H 0.06 1.59 7.82 -52.49 -0.41 1.17 16 12 C 0.07 1.91 5.22 -17.82 -0.09 1.82 16 13 N -0.88 -24.43 12.52 55.43 0.69 -23.74 16 14 Si 0.89 20.69 29.55 -169.99 -5.02 15.67 16 15 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 16 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 17 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 18 C -0.17 -3.75 9.88 -26.73 -0.26 -4.01 16 19 C -0.21 -4.23 9.68 -26.73 -0.26 -4.49 16 20 C -0.14 -1.93 5.81 -25.03 -0.15 -2.07 16 21 C -0.12 -1.29 6.91 -24.70 -0.17 -1.46 16 22 C -0.12 -1.39 6.83 -25.07 -0.17 -1.56 16 23 C -0.11 -1.48 6.26 -25.62 -0.16 -1.64 16 24 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.05 0.62 6.18 -51.93 -0.32 0.30 16 28 H 0.06 0.85 6.63 -51.93 -0.34 0.50 16 29 H 0.40 7.58 7.78 -40.82 -0.32 7.26 16 30 H 0.08 2.19 7.18 -51.93 -0.37 1.82 16 31 H 0.04 0.96 7.86 -51.93 -0.41 0.55 16 32 H 0.26 7.04 8.32 -40.82 -0.34 6.70 16 33 H 0.06 1.40 8.05 -51.93 -0.42 0.98 16 34 H 0.08 1.92 8.14 -51.93 -0.42 1.50 16 35 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 36 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.09 1.45 6.78 -51.92 -0.35 1.10 16 38 H 0.07 0.91 6.08 -51.93 -0.32 0.59 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.09 1.12 7.95 -51.93 -0.41 0.71 16 44 H 0.08 1.23 7.67 -51.93 -0.40 0.83 16 LS Contribution 351.28 15.07 5.29 5.29 Total: -1.00 -28.90 351.28 -8.33 -37.23 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: -7.43 Total: 9.66 kcal Atomic # 6 Polarization: -10.71 SS G_CDS: -1.34 Total: -12.06 kcal Atomic # 7 Polarization: -38.37 SS G_CDS: 0.42 Total: -37.95 kcal Atomic # 8 Polarization: -17.60 SS G_CDS: -0.24 Total: -17.84 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -28.90 -8.33 -37.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341656526.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.714 kcal (2) G-P(sol) polarization free energy of solvation -28.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds