Wall clock time and date at job start Tue Mar 31 2020 05:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42893 * 109.47237 * 2 1 4 4 C 1.42897 * 114.00085 * 179.97438 * 3 2 1 5 5 C 1.53788 * 113.61250 * 112.50335 * 4 3 2 6 6 C 1.53785 * 87.07934 * 139.98248 * 5 4 3 7 7 C 1.50699 * 113.61379 * 220.01830 * 6 5 4 8 8 O 1.21288 * 119.99756 * 102.22087 * 7 6 5 9 9 N 1.34773 * 119.99808 * 282.21430 * 7 6 5 10 10 C 1.37088 * 120.00553 * 4.43328 * 9 7 6 11 11 H 1.08007 * 120.00481 * 125.98451 * 10 9 7 12 12 C 1.38958 * 119.99830 * 305.98964 * 10 9 7 13 13 N 1.31414 * 119.99645 * 337.39120 * 12 10 9 14 14 Si 1.86799 * 120.00100 * 157.39376 * 12 10 9 15 15 H 1.48497 * 109.47004 * 89.99851 * 14 12 10 16 16 H 1.48498 * 109.47100 * 209.99961 * 14 12 10 17 17 H 1.48500 * 109.47254 * 330.00138 * 14 12 10 18 18 C 1.46508 * 119.99597 * 184.42921 * 9 7 6 19 19 C 1.54272 * 110.03058 * 237.90896 * 18 9 7 20 20 C 1.54961 * 104.16087 * 217.13851 * 19 18 9 21 21 C 1.54884 * 102.77768 * 37.88720 * 20 19 18 22 22 C 1.53876 * 110.03132 * 120.69634 * 18 9 7 23 23 C 1.53778 * 87.08315 * 334.56903 * 6 5 4 24 24 H 1.09006 * 109.46447 * 299.99609 * 1 2 3 25 25 H 1.08996 * 109.47280 * 59.99586 * 1 2 3 26 26 H 1.09001 * 109.47270 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46533 * 240.00038 * 2 1 3 28 28 H 1.08996 * 109.47280 * 120.00414 * 2 1 3 29 29 H 1.09001 * 112.91122 * 341.25973 * 4 3 2 30 30 H 1.08997 * 113.61644 * 254.53026 * 5 4 3 31 31 H 1.08999 * 113.61019 * 25.43821 * 5 4 3 32 32 H 1.09000 * 113.68600 * 89.12781 * 6 5 4 33 33 H 0.97001 * 119.99692 * 181.89328 * 13 12 10 34 34 H 1.09001 * 110.01494 * 359.29807 * 18 9 7 35 35 H 1.09002 * 110.48881 * 335.78803 * 19 18 9 36 36 H 1.08997 * 110.48263 * 98.42857 * 19 18 9 37 37 H 1.09005 * 110.72064 * 279.57937 * 20 19 18 38 38 H 1.08998 * 110.92652 * 156.30013 * 20 19 18 39 39 H 1.08997 * 110.48951 * 203.41069 * 21 20 19 40 40 H 1.09004 * 110.59898 * 80.81997 * 21 20 19 41 41 H 1.09004 * 110.02769 * 238.57002 * 22 18 9 42 42 H 1.09002 * 110.02979 * 359.94656 * 22 18 9 43 43 H 1.08993 * 113.61720 * 270.88363 * 23 6 5 44 44 H 1.09003 * 113.61462 * 139.97858 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 6 4.0029 2.0461 -1.3011 6 6 4.9900 2.8312 -0.4212 7 6 5.2280 4.2427 -0.8925 8 8 4.6848 5.1697 -0.3297 9 7 6.0444 4.4750 -1.9394 10 6 6.5865 3.4237 -2.6324 11 1 6.4623 3.3615 -3.7035 12 6 7.2957 2.4380 -1.9569 13 7 7.8304 2.6996 -0.7853 14 14 7.4891 0.7414 -2.7141 15 1 8.7190 0.7077 -3.5455 16 1 7.5931 -0.2734 -1.6349 17 1 6.3089 0.4411 -3.5638 18 6 6.3525 5.8510 -2.3368 19 6 5.9406 6.0817 -3.8055 20 6 7.0483 7.0073 -4.3690 21 6 8.3285 6.4638 -3.6873 22 6 7.8701 6.0942 -2.2614 23 6 3.9485 2.7252 0.7051 24 1 -0.3632 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 3.9289 0.5458 0.3235 30 1 4.4822 1.3046 -1.9402 31 1 3.2994 2.6801 -1.8406 32 1 5.9147 2.2930 -0.2129 33 1 8.3487 2.0202 -0.3262 34 1 5.8291 6.5529 -1.6876 35 1 5.9201 5.1370 -4.3489 36 1 4.9691 6.5733 -3.8565 37 1 6.8681 8.0434 -4.0820 38 1 7.1188 6.9149 -5.4527 39 1 9.0987 7.2343 -3.6525 40 1 8.6964 5.5812 -4.2105 41 1 8.0831 6.9147 -1.5762 42 1 8.3772 5.1886 -1.9283 43 1 3.2300 3.5448 0.7141 44 1 4.3837 2.5318 1.6856 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342278577.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:54 Heat of formation + Delta-G solvation = -67.507834 kcal Electronic energy + Delta-G solvation = -23588.317728 eV Core-core repulsion = 20313.149070 eV Total energy + Delta-G solvation = -3275.168658 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.55470 -38.19745 -36.70614 -35.14825 -34.07123 -31.43213 -30.76889 -27.89631 -27.27846 -25.18251 -24.92709 -24.16975 -22.63793 -20.37927 -20.05133 -19.18492 -18.49035 -17.20037 -15.92165 -15.67722 -15.35975 -15.15813 -14.85734 -14.51789 -14.41112 -13.71173 -13.34163 -13.08815 -12.62166 -12.59335 -12.39101 -12.26818 -11.76300 -11.62269 -11.28951 -11.23062 -11.15548 -10.94610 -10.83737 -10.66941 -10.46880 -10.45695 -10.30113 -10.25901 -10.13283 -9.86871 -9.82312 -9.58961 -8.96954 -8.71484 -8.13554 -7.23028 -6.42194 -4.20025 3.05932 3.16790 3.20154 3.99502 4.02650 4.16864 4.83375 4.89871 5.08073 5.21674 5.31463 5.37642 5.39274 5.42824 5.46177 5.53120 5.60134 5.71425 5.79752 5.97883 6.10262 6.16979 6.21174 6.24888 6.29803 6.36092 6.44870 6.47455 6.54139 6.58305 6.59946 6.68532 6.75032 6.80836 6.88722 6.99950 7.15798 7.26467 7.37380 7.45128 7.70352 8.06974 8.65594 8.93981 9.65712 10.08393 10.61721 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.017943 B = 0.005884 C = 0.005058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.128632 B = 4757.525286 C = 5534.685721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.054 3.946 3 O -0.375 6.375 4 C 0.056 3.944 5 C -0.123 4.123 6 C -0.114 4.114 7 C 0.526 3.474 8 O -0.611 6.611 9 N -0.447 5.447 10 C -0.326 4.326 11 H 0.080 0.920 12 C 0.055 3.945 13 N -0.855 5.855 14 Si 0.892 3.108 15 H -0.276 1.276 16 H -0.280 1.280 17 H -0.265 1.265 18 C 0.133 3.867 19 C -0.128 4.128 20 C -0.121 4.121 21 C -0.116 4.116 22 C -0.126 4.126 23 C -0.118 4.118 24 H 0.061 0.939 25 H 0.062 0.938 26 H 0.065 0.935 27 H 0.045 0.955 28 H 0.043 0.957 29 H 0.080 0.920 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.136 0.864 33 H 0.270 0.730 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.052 0.948 37 H 0.057 0.943 38 H 0.056 0.944 39 H 0.050 0.950 40 H 0.064 0.936 41 H 0.045 0.955 42 H 0.093 0.907 43 H 0.093 0.907 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.332 -3.546 -2.108 5.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.023 4.023 3 O -0.295 6.295 4 C -0.002 4.002 5 C -0.161 4.161 6 C -0.135 4.135 7 C 0.317 3.683 8 O -0.497 6.497 9 N -0.166 5.166 10 C -0.454 4.454 11 H 0.098 0.902 12 C -0.151 4.151 13 N -0.491 5.491 14 Si 0.718 3.282 15 H -0.202 1.202 16 H -0.205 1.205 17 H -0.189 1.189 18 C 0.029 3.971 19 C -0.166 4.166 20 C -0.159 4.159 21 C -0.154 4.154 22 C -0.164 4.164 23 C -0.156 4.156 24 H 0.080 0.920 25 H 0.081 0.919 26 H 0.084 0.916 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.098 0.902 30 H 0.085 0.915 31 H 0.101 0.899 32 H 0.153 0.847 33 H 0.080 0.920 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.083 0.917 41 H 0.064 0.936 42 H 0.112 0.888 43 H 0.111 0.889 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.607 -3.009 -1.687 5.755 hybrid contribution 0.633 -1.234 -0.350 1.430 sum -3.973 -4.243 -2.037 6.159 Atomic orbital electron populations 1.21737 0.94296 1.01699 1.03007 1.22440 0.95205 0.84969 0.99650 1.87967 1.21556 1.25238 1.94695 1.23855 0.79901 0.97995 0.98410 1.23181 0.97490 0.99298 0.96102 1.22625 0.99329 0.96043 0.95453 1.20083 0.77861 0.89609 0.80784 1.90480 1.53295 1.46151 1.59737 1.43363 1.40770 1.03710 1.28788 1.19033 1.33846 0.99610 0.92927 0.90230 1.25477 0.93727 0.99997 0.95901 1.70018 1.29488 1.34109 1.15482 0.86499 0.79178 0.83131 0.79390 1.20228 1.20500 1.18916 1.21563 0.94492 0.86760 0.94269 1.22655 0.97068 0.99690 0.97237 1.22433 0.96014 0.98586 0.98863 1.22257 0.96419 0.99668 0.97023 1.22397 0.96753 1.01957 0.95329 1.23125 0.98179 0.96752 0.97588 0.92033 0.91929 0.91597 0.93673 0.93848 0.90173 0.91450 0.89937 0.84724 0.91991 0.90601 0.90567 0.92921 0.92416 0.92534 0.93158 0.91749 0.93636 0.88795 0.88854 0.91880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 10.28 37.16 0.38 -1.28 16 2 C 0.05 0.73 6.50 37.16 0.24 0.97 16 3 O -0.38 -6.56 10.35 -35.23 -0.36 -6.93 16 4 C 0.06 1.01 4.31 -25.91 -0.11 0.90 16 5 C -0.12 -2.48 7.06 -25.91 -0.18 -2.66 16 6 C -0.11 -2.57 2.63 -90.96 -0.24 -2.81 16 7 C 0.53 13.50 6.77 -10.99 -0.07 13.42 16 8 O -0.61 -17.01 15.30 5.55 0.08 -16.92 16 9 N -0.45 -10.92 2.34 -106.53 -0.25 -11.17 16 10 C -0.33 -7.82 6.93 -14.93 -0.10 -7.92 16 11 H 0.08 1.89 6.79 -52.48 -0.36 1.54 16 12 C 0.05 1.30 3.44 -17.46 -0.06 1.24 16 13 N -0.85 -21.36 11.49 55.50 0.64 -20.72 16 14 Si 0.89 18.46 28.93 -169.99 -4.92 13.54 16 15 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 16 H -0.28 -5.76 7.11 56.52 0.40 -5.35 16 17 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 18 C 0.13 2.96 3.29 -66.80 -0.22 2.74 16 19 C -0.13 -2.43 6.42 -25.03 -0.16 -2.59 16 20 C -0.12 -1.94 6.91 -24.70 -0.17 -2.11 16 21 C -0.12 -2.00 6.83 -25.08 -0.17 -2.17 16 22 C -0.13 -2.61 6.27 -25.61 -0.16 -2.77 16 23 C -0.12 -2.42 7.21 -25.92 -0.19 -2.61 16 24 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.08 1.31 7.87 -51.93 -0.41 0.90 16 30 H 0.07 1.32 7.44 -51.93 -0.39 0.94 16 31 H 0.08 1.74 8.09 -51.93 -0.42 1.32 16 32 H 0.14 3.22 4.84 -51.93 -0.25 2.97 16 33 H 0.27 6.41 8.31 -40.82 -0.34 6.07 16 34 H 0.08 1.81 6.95 -51.93 -0.36 1.44 16 35 H 0.08 1.51 6.39 -51.93 -0.33 1.18 16 36 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.09 2.24 7.34 -51.93 -0.38 1.86 16 43 H 0.09 2.06 7.50 -51.93 -0.39 1.67 16 44 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 LS Contribution 343.80 15.07 5.18 5.18 Total: -1.00 -27.54 343.80 -8.34 -35.88 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: -7.49 Total: 8.79 kcal Atomic # 6 Polarization: -6.43 SS G_CDS: -1.22 Total: -7.65 kcal Atomic # 7 Polarization: -32.28 SS G_CDS: 0.39 Total: -31.89 kcal Atomic # 8 Polarization: -23.57 SS G_CDS: -0.28 Total: -23.85 kcal Atomic # 14 Polarization: 18.46 SS G_CDS: -4.92 Total: 13.54 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -27.54 -8.34 -35.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342278577.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.629 kcal (2) G-P(sol) polarization free energy of solvation -27.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds