Wall clock time and date at job start Tue Mar 31 2020 05:48:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42905 * 109.47152 * 2 1 4 4 C 1.42895 * 113.99841 * 175.08004 * 3 2 1 5 5 H 1.08996 * 109.47314 * 34.32103 * 4 3 2 6 6 C 1.52997 * 109.47186 * 274.32342 * 4 3 2 7 7 C 1.50706 * 109.47208 * 173.81907 * 6 4 3 8 8 O 1.21283 * 119.99852 * 354.15335 * 7 6 4 9 9 N 1.34769 * 120.00129 * 173.88380 * 7 6 4 10 10 C 1.46500 * 120.00402 * 180.26964 * 9 7 6 11 11 C 1.53002 * 109.47400 * 179.97438 * 10 9 7 12 12 C 1.50700 * 109.46950 * 179.97438 * 11 10 9 13 13 H 1.08002 * 120.00338 * 0.02562 * 12 11 10 14 14 C 1.37873 * 119.99816 * 179.97438 * 12 11 10 15 15 N 1.31512 * 120.00381 * 0.02562 * 14 12 11 16 16 Si 1.86807 * 119.99920 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47036 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.47027 * 120.00574 * 16 14 12 19 19 H 1.48499 * 109.46927 * 240.00193 * 16 14 12 20 20 C 1.50697 * 109.47124 * 154.32176 * 4 3 2 21 21 C 1.30533 * 124.44973 * 235.02563 * 20 4 3 22 22 C 1.51095 * 111.10440 * 179.97438 * 21 20 4 23 23 C 1.54634 * 104.72910 * 16.43591 * 22 21 20 24 24 C 1.51108 * 124.44689 * 54.72280 * 20 4 3 25 25 H 1.08998 * 109.47177 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47208 * 300.00999 * 1 2 3 27 27 H 1.09002 * 109.46808 * 60.00445 * 1 2 3 28 28 H 1.08991 * 109.47136 * 239.99288 * 2 1 3 29 29 H 1.09002 * 109.46808 * 119.99555 * 2 1 3 30 30 H 1.08998 * 109.47095 * 53.81309 * 6 4 3 31 31 H 1.09005 * 109.46930 * 293.81353 * 6 4 3 32 32 H 0.97005 * 119.99818 * 0.26940 * 9 7 6 33 33 H 1.08994 * 109.47226 * 300.00289 * 10 9 7 34 34 H 1.09004 * 109.46698 * 59.99705 * 10 9 7 35 35 H 1.08996 * 109.47026 * 300.00248 * 11 10 9 36 36 H 1.08996 * 109.46882 * 60.00240 * 11 10 9 37 37 H 0.96997 * 120.00555 * 179.97438 * 15 14 12 38 38 H 1.08002 * 124.44666 * 359.95586 * 21 20 4 39 39 H 1.08999 * 110.38938 * 135.24538 * 22 21 20 40 40 H 1.09004 * 110.39058 * 257.62285 * 22 21 20 41 41 H 1.09007 * 111.03919 * 93.39568 * 23 22 21 42 42 H 1.09000 * 111.04411 * 217.33421 * 23 22 21 43 43 H 1.09001 * 110.38312 * 282.39678 * 24 20 4 44 44 H 1.08998 * 110.38883 * 44.77619 * 24 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4263 1.4617 0.1120 5 1 3.9000 0.6286 -0.4072 6 6 3.8253 1.4353 1.5888 7 6 5.3276 1.4029 1.7028 8 8 6.0093 1.2940 0.7056 9 7 5.9139 1.5003 2.9124 10 6 7.3745 1.4747 3.0228 11 6 7.7772 1.6013 4.4934 12 6 9.2797 1.5744 4.6069 13 1 9.8867 1.4771 3.7189 14 6 9.8794 1.6750 5.8443 15 7 9.1404 1.7940 6.9256 16 14 11.7419 1.6423 5.9849 17 1 12.3380 1.5021 4.6321 18 1 12.2137 2.9066 6.6048 19 1 12.1544 0.4927 6.8297 20 6 3.8760 2.7601 -0.5067 21 6 4.7755 2.8573 -1.4477 22 6 4.9937 4.2986 -1.8451 23 6 4.3740 5.1223 -0.6924 24 6 3.3402 4.1202 -0.1238 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5140 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.8933 -0.5139 -0.8898 29 1 1.8933 -0.5138 0.8901 30 1 3.4056 0.5480 2.0627 31 1 3.4425 2.3274 2.0845 32 1 5.3687 1.5873 3.7100 33 1 7.7527 0.5344 2.6218 34 1 7.7961 2.3062 2.4580 35 1 7.3990 2.5418 4.8940 36 1 7.3556 0.7701 5.0584 37 1 9.5623 1.8644 7.7961 38 1 5.2956 2.0176 -1.8846 39 1 6.0591 4.5111 -1.9333 40 1 4.4834 4.5153 -2.7836 41 1 5.1263 5.3794 0.0533 42 1 3.8802 6.0168 -1.0721 43 1 2.3615 4.2834 -0.5751 44 1 3.2796 4.2129 0.9605 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342616909.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:36 Heat of formation + Delta-G solvation = -91.922034 kcal Electronic energy + Delta-G solvation = -22119.968251 eV Core-core repulsion = 18843.740913 eV Total energy + Delta-G solvation = -3276.227337 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.90047 -38.45639 -37.56915 -34.85581 -32.87170 -32.66508 -30.68526 -29.71012 -28.65301 -27.82250 -24.90634 -23.45900 -22.70635 -21.05826 -20.72739 -19.94236 -18.15037 -17.26059 -16.43048 -16.17389 -16.10497 -15.67386 -15.32688 -14.92797 -14.82254 -14.43742 -13.74999 -13.50309 -13.19932 -12.82731 -12.69589 -12.61379 -12.30951 -12.23669 -11.84762 -11.66765 -11.57987 -11.37575 -11.20234 -11.11344 -11.05525 -11.02688 -10.63582 -10.58709 -10.33469 -9.80247 -9.75788 -9.43915 -9.16180 -8.62425 -8.51434 -8.33592 -6.10396 -4.13196 2.25104 3.04884 3.27399 3.34791 3.39039 3.44606 3.93987 4.41373 4.60553 4.64295 4.81957 4.92833 4.97226 5.06220 5.09792 5.16195 5.18439 5.26710 5.27428 5.50671 5.52934 5.56919 5.67500 5.70588 5.80480 5.83642 5.90158 5.95679 5.98011 6.08575 6.26848 6.34762 6.35403 6.69665 6.74068 6.93473 6.95128 7.17758 7.51297 7.61109 7.88007 8.03398 8.27228 8.68042 8.93174 9.51776 11.01241 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.019415 B = 0.003408 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.834008 B = 8213.487104 C = 9121.883617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.053 3.947 3 O -0.377 6.377 4 C 0.160 3.840 5 H 0.074 0.926 6 C -0.165 4.165 7 C 0.509 3.491 8 O -0.545 6.545 9 N -0.723 5.723 10 C 0.123 3.877 11 C 0.012 3.988 12 C -0.521 4.521 13 H 0.059 0.941 14 C 0.058 3.942 15 N -0.894 5.894 16 Si 0.896 3.104 17 H -0.271 1.271 18 H -0.283 1.283 19 H -0.283 1.283 20 C -0.135 4.135 21 C -0.127 4.127 22 C -0.099 4.099 23 C -0.126 4.126 24 C -0.083 4.083 25 H 0.069 0.931 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.048 0.952 29 H 0.049 0.951 30 H 0.093 0.907 31 H 0.097 0.903 32 H 0.397 0.603 33 H 0.054 0.946 34 H 0.055 0.945 35 H 0.022 0.978 36 H 0.022 0.978 37 H 0.261 0.739 38 H 0.124 0.876 39 H 0.070 0.930 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.069 0.931 43 H 0.074 0.926 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.761 0.703 -13.844 21.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.024 4.024 3 O -0.297 6.297 4 C 0.102 3.898 5 H 0.092 0.908 6 C -0.205 4.205 7 C 0.294 3.706 8 O -0.423 6.423 9 N -0.373 5.373 10 C 0.001 3.999 11 C -0.025 4.025 12 C -0.559 4.559 13 H 0.078 0.922 14 C -0.143 4.143 15 N -0.533 5.533 16 Si 0.724 3.276 17 H -0.196 1.196 18 H -0.209 1.209 19 H -0.209 1.209 20 C -0.135 4.135 21 C -0.145 4.145 22 C -0.136 4.136 23 C -0.164 4.164 24 C -0.120 4.120 25 H 0.088 0.912 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.111 0.889 31 H 0.116 0.884 32 H 0.230 0.770 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.040 0.960 36 H 0.040 0.960 37 H 0.071 0.929 38 H 0.142 0.858 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.087 0.913 43 H 0.092 0.908 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -16.358 0.808 -14.381 21.795 hybrid contribution 0.963 -0.313 0.832 1.310 sum -15.395 0.495 -13.549 20.514 Atomic orbital electron populations 1.21735 0.93790 1.02117 1.03059 1.22517 0.95472 0.84158 1.00213 1.87948 1.21185 1.26189 1.94362 1.20303 0.80677 0.95827 0.92953 0.90770 1.22145 0.94265 1.04830 0.99258 1.20281 0.89638 0.76822 0.83819 1.90665 1.65564 1.49851 1.36218 1.46335 1.09619 1.73372 1.08018 1.21686 0.76552 1.00639 1.01032 1.19325 0.97049 0.97732 0.88419 1.21093 0.91189 1.50648 0.93015 0.92233 1.24999 0.98536 0.95002 0.95776 1.69962 1.35216 1.50012 0.98113 0.86466 0.85279 0.77636 0.78245 1.19580 1.20920 1.20926 1.21457 0.99321 0.94076 0.98624 1.23068 0.97193 0.97540 0.96660 1.21333 1.01183 0.92649 0.98414 1.22483 0.98373 0.97526 0.97969 1.21182 0.98570 0.91461 1.00831 0.91234 0.91847 0.91939 0.93365 0.93292 0.88863 0.88425 0.76989 0.92712 0.92667 0.95969 0.96003 0.92898 0.85837 0.91159 0.90902 0.91062 0.91252 0.90803 0.91611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 10.28 37.16 0.38 -0.76 16 2 C 0.05 0.50 6.45 37.16 0.24 0.74 16 3 O -0.38 -4.55 9.97 -35.23 -0.35 -4.90 16 4 C 0.16 2.08 2.24 -27.89 -0.06 2.01 16 5 H 0.07 1.02 7.49 -51.93 -0.39 0.63 16 6 C -0.16 -2.09 5.44 -27.88 -0.15 -2.24 16 7 C 0.51 8.48 7.52 -10.99 -0.08 8.39 16 8 O -0.54 -10.69 14.41 5.55 0.08 -10.61 16 9 N -0.72 -12.60 5.56 -60.29 -0.33 -12.93 16 10 C 0.12 2.63 5.61 -4.04 -0.02 2.61 16 11 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 12 C -0.52 -14.50 9.11 -34.44 -0.31 -14.81 16 13 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 14 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 15 N -0.89 -26.15 13.29 55.43 0.74 -25.42 16 16 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 17 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 C -0.13 -1.81 4.24 -100.74 -0.43 -2.24 16 21 C -0.13 -1.71 9.56 -35.70 -0.34 -2.05 16 22 C -0.10 -1.14 6.81 -26.83 -0.18 -1.32 16 23 C -0.13 -1.41 7.20 -24.92 -0.18 -1.59 16 24 C -0.08 -1.00 6.68 -26.73 -0.18 -1.17 16 25 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.43 7.37 -51.93 -0.38 0.05 16 30 H 0.09 1.01 7.38 -51.93 -0.38 0.63 16 31 H 0.10 1.14 7.37 -51.93 -0.38 0.76 16 32 H 0.40 6.02 8.47 -40.82 -0.35 5.67 16 33 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 38 H 0.12 1.72 8.06 -52.49 -0.42 1.29 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.07 0.78 7.42 -51.93 -0.39 0.40 16 LS Contribution 361.21 15.07 5.44 5.44 Total: -1.00 -31.30 361.21 -8.74 -40.03 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -7.73 Total: 2.72 kcal Atomic # 6 Polarization: -9.16 SS G_CDS: -1.56 Total: -10.72 kcal Atomic # 7 Polarization: -38.75 SS G_CDS: 0.40 Total: -38.35 kcal Atomic # 8 Polarization: -15.24 SS G_CDS: -0.27 Total: -15.51 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.30 -8.74 -40.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342616909.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.888 kcal (2) G-P(sol) polarization free energy of solvation -31.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds