Wall clock time and date at job start Tue Mar 31 2020 05:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42895 * 109.47036 * 2 1 4 4 C 1.42901 * 113.99948 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.46847 * 29.99943 * 4 3 2 6 6 C 1.52998 * 109.47381 * 150.00341 * 4 3 2 7 7 C 1.50704 * 109.46780 * 295.00111 * 6 4 3 8 8 O 1.21280 * 120.00325 * 0.02562 * 7 6 4 9 9 N 1.34782 * 119.99510 * 179.97438 * 7 6 4 10 10 C 1.46501 * 119.99574 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.47192 * 180.02562 * 10 9 7 12 12 C 1.50693 * 109.47387 * 179.97438 * 11 10 9 13 13 H 1.08005 * 120.00307 * 359.97438 * 12 11 10 14 14 C 1.37872 * 120.00062 * 179.97438 * 12 11 10 15 15 N 1.31518 * 120.00156 * 180.02562 * 14 12 11 16 16 Si 1.86792 * 120.00196 * 0.02562 * 14 12 11 17 17 H 1.48501 * 109.47236 * 89.99848 * 16 14 12 18 18 H 1.48501 * 109.47483 * 210.00159 * 16 14 12 19 19 H 1.48498 * 109.47072 * 329.99935 * 16 14 12 20 20 C 1.50701 * 109.47007 * 270.00117 * 4 3 2 21 21 C 1.30529 * 124.44723 * 125.02229 * 20 4 3 22 22 C 1.51098 * 111.10712 * 179.97438 * 21 20 4 23 23 C 1.54636 * 104.72459 * 16.43705 * 22 21 20 24 24 C 1.51103 * 124.45176 * 304.72348 * 20 4 3 25 25 H 1.09001 * 109.47002 * 299.99477 * 1 2 3 26 26 H 1.08993 * 109.46955 * 59.99914 * 1 2 3 27 27 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46801 * 120.00369 * 2 1 3 29 29 H 1.09001 * 109.46998 * 239.99965 * 2 1 3 30 30 H 1.09003 * 109.46874 * 54.99685 * 6 4 3 31 31 H 1.08993 * 109.47083 * 174.99861 * 6 4 3 32 32 H 0.96993 * 120.00252 * 359.97438 * 9 7 6 33 33 H 1.09008 * 109.46487 * 299.99642 * 10 9 7 34 34 H 1.08993 * 109.47465 * 59.99319 * 10 9 7 35 35 H 1.08999 * 109.46814 * 299.99749 * 11 10 9 36 36 H 1.09003 * 109.46993 * 59.99366 * 11 10 9 37 37 H 0.96999 * 120.00448 * 179.97438 * 15 14 12 38 38 H 1.07999 * 124.44762 * 0.02562 * 21 20 4 39 39 H 1.09001 * 110.39227 * 135.25264 * 22 21 20 40 40 H 1.09005 * 110.38496 * 257.62743 * 22 21 20 41 41 H 1.08999 * 111.03562 * 93.40346 * 23 22 21 42 42 H 1.08997 * 111.03806 * 217.29802 * 23 22 21 43 43 H 1.08997 * 110.38316 * 282.39954 * 24 20 4 44 44 H 1.08999 * 110.38131 * 44.77339 * 24 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.8631 0.6016 -0.5147 6 6 3.8404 2.7458 -0.7217 7 6 3.4471 2.6544 -2.1737 8 8 2.8933 1.6592 -2.5905 9 7 3.7099 3.6792 -3.0087 10 6 3.3270 3.5906 -4.4200 11 6 3.7366 4.8763 -5.1413 12 6 3.3434 4.7849 -6.5931 13 1 2.8509 3.8983 -6.9645 14 6 3.6122 5.8331 -7.4474 15 7 3.2686 5.7536 -8.7144 16 14 4.4645 7.3663 -6.8054 17 1 5.9351 7.2071 -6.9374 18 1 4.0217 8.5452 -7.5924 19 1 4.1145 7.5654 -5.3761 20 6 3.9322 1.4995 1.4200 21 6 4.8280 0.6861 1.9097 22 6 5.1070 0.9947 3.3623 23 6 3.9201 1.8783 3.8114 24 6 3.4688 2.4899 2.4629 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 3.3372 3.5964 -0.2618 31 1 4.9197 2.8773 -0.6452 32 1 4.1517 4.4756 -2.6752 33 1 3.8302 2.7402 -4.8802 34 1 2.2477 3.4588 -4.4962 35 1 3.2338 5.7269 -4.6812 36 1 4.8160 5.0075 -5.0651 37 1 3.4574 6.4912 -9.3154 38 1 5.3074 -0.1033 1.3499 39 1 5.1382 0.0751 3.9467 40 1 6.0454 1.5404 3.4611 41 1 3.1289 1.2745 4.2558 42 1 4.2499 2.6558 4.5005 43 1 3.9435 3.4581 2.3044 44 1 2.3837 2.5891 2.4364 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342616911.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:38 Heat of formation + Delta-G solvation = -89.433581 kcal Electronic energy + Delta-G solvation = -21937.948330 eV Core-core repulsion = 18661.828901 eV Total energy + Delta-G solvation = -3276.119430 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.89070 -38.77155 -37.32876 -34.91539 -32.96308 -32.69012 -30.58769 -30.05647 -28.97649 -28.13691 -25.04693 -23.18155 -22.78433 -21.06580 -20.74722 -19.89269 -18.54241 -17.04795 -16.92072 -16.71863 -15.95993 -15.50832 -15.32346 -15.08280 -14.69322 -14.21832 -13.95347 -13.58425 -13.24707 -13.01337 -12.78091 -12.59435 -12.49353 -12.31277 -11.91712 -11.88387 -11.60416 -11.47296 -11.46366 -11.31934 -11.19243 -11.16355 -10.78943 -10.36921 -10.23578 -9.95131 -9.56491 -9.44246 -9.26518 -8.99459 -8.62543 -8.46883 -6.10166 -4.10136 1.88006 3.03298 3.25777 3.33465 3.34935 3.57432 3.76683 4.33241 4.38570 4.38848 4.76718 4.83255 4.90485 5.00452 5.10245 5.14842 5.22787 5.26433 5.33910 5.41070 5.43838 5.46684 5.52414 5.59062 5.65306 5.75287 5.78215 5.81558 5.95355 5.97804 6.11963 6.15899 6.24134 6.28609 6.58888 6.60380 6.81804 7.16871 7.25583 7.28618 7.68339 7.97088 8.45113 8.65645 8.94405 9.50056 11.02967 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.023081 B = 0.003175 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.808336 B = 8817.170813 C = 9628.215124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.064 3.936 3 O -0.365 6.365 4 C 0.157 3.843 5 H 0.073 0.927 6 C -0.137 4.137 7 C 0.509 3.491 8 O -0.540 6.540 9 N -0.729 5.729 10 C 0.131 3.869 11 C -0.022 4.022 12 C -0.522 4.522 13 H 0.075 0.925 14 C 0.069 3.931 15 N -0.899 5.899 16 Si 0.883 3.117 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.266 1.266 20 C -0.152 4.152 21 C -0.161 4.161 22 C -0.098 4.098 23 C -0.125 4.125 24 C -0.089 4.089 25 H 0.058 0.942 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.040 0.960 29 H 0.053 0.947 30 H 0.100 0.900 31 H 0.102 0.898 32 H 0.395 0.605 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.022 0.978 36 H 0.017 0.983 37 H 0.265 0.735 38 H 0.123 0.877 39 H 0.068 0.932 40 H 0.075 0.925 41 H 0.069 0.931 42 H 0.071 0.929 43 H 0.075 0.925 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.448 -8.255 26.185 27.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.013 4.013 3 O -0.284 6.284 4 C 0.099 3.901 5 H 0.091 0.909 6 C -0.177 4.177 7 C 0.295 3.705 8 O -0.417 6.417 9 N -0.380 5.380 10 C 0.009 3.991 11 C -0.060 4.060 12 C -0.561 4.561 13 H 0.093 0.907 14 C -0.133 4.133 15 N -0.538 5.538 16 Si 0.710 3.290 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.191 1.191 20 C -0.152 4.152 21 C -0.179 4.179 22 C -0.135 4.135 23 C -0.163 4.163 24 C -0.126 4.126 25 H 0.077 0.923 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.058 0.942 29 H 0.071 0.929 30 H 0.118 0.882 31 H 0.120 0.880 32 H 0.228 0.772 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.040 0.960 36 H 0.035 0.965 37 H 0.074 0.926 38 H 0.141 0.859 39 H 0.087 0.913 40 H 0.093 0.907 41 H 0.088 0.912 42 H 0.089 0.911 43 H 0.093 0.907 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.906 -8.715 25.680 27.186 hybrid contribution 0.917 1.056 0.247 1.420 sum 2.823 -7.659 25.928 27.182 Atomic orbital electron populations 1.21709 0.94058 1.01870 1.02967 1.22398 0.95281 0.83930 0.99659 1.87910 1.19368 1.26435 1.94658 1.20329 0.82480 0.97520 0.89782 0.90868 1.21788 1.02972 0.99716 0.93247 1.20389 0.79136 0.83411 0.87605 1.90671 1.41980 1.31178 1.77913 1.46319 1.61267 1.19052 1.11357 1.21467 0.99908 1.00254 0.77488 1.19790 0.96454 0.92788 0.96937 1.20932 1.39734 1.04324 0.91090 0.90653 1.25006 0.95219 0.98408 0.94697 1.69906 1.47363 1.32582 1.03904 0.86743 0.80041 0.82874 0.79369 1.20244 1.21277 1.19062 1.22564 0.98385 0.97846 0.96425 1.23199 0.98718 0.99281 0.96720 1.21331 0.98811 0.99724 0.93666 1.22477 0.97813 0.98987 0.97012 1.21237 1.01769 0.97578 0.92049 0.92318 0.91605 0.91468 0.94198 0.92919 0.88191 0.87956 0.77196 0.92145 0.92052 0.96021 0.96497 0.92563 0.85942 0.91297 0.90710 0.91244 0.91057 0.90684 0.90606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 10.28 37.16 0.38 -1.22 16 2 C 0.06 0.78 6.46 37.16 0.24 1.02 16 3 O -0.36 -5.10 9.19 -49.66 -0.46 -5.56 16 4 C 0.16 1.92 2.05 -27.88 -0.06 1.86 16 5 H 0.07 0.95 7.52 -51.93 -0.39 0.56 16 6 C -0.14 -1.63 5.35 -27.88 -0.15 -1.77 16 7 C 0.51 8.35 7.71 -10.98 -0.08 8.27 16 8 O -0.54 -10.88 15.42 -8.87 -0.14 -11.01 16 9 N -0.73 -12.14 5.56 -60.29 -0.33 -12.48 16 10 C 0.13 2.73 5.61 -4.04 -0.02 2.70 16 11 C -0.02 -0.51 4.15 -27.89 -0.12 -0.62 16 12 C -0.52 -14.79 9.66 -34.45 -0.33 -15.12 16 13 H 0.08 2.31 7.99 -52.48 -0.42 1.89 16 14 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 15 N -0.90 -27.55 13.96 55.43 0.77 -26.78 16 16 Si 0.88 21.16 27.47 -169.99 -4.67 16.49 16 17 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 19 H -0.27 -6.03 6.54 56.52 0.37 -5.66 16 20 C -0.15 -1.52 5.03 -100.74 -0.51 -2.02 16 21 C -0.16 -1.42 10.55 -35.70 -0.38 -1.80 16 22 C -0.10 -0.71 6.81 -26.83 -0.18 -0.90 16 23 C -0.13 -0.91 7.20 -24.93 -0.18 -1.09 16 24 C -0.09 -0.79 6.70 -26.74 -0.18 -0.97 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.05 0.70 8.08 -51.93 -0.42 0.28 16 30 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.40 5.42 8.47 -40.82 -0.35 5.08 16 33 H 0.06 1.32 8.14 -51.92 -0.42 0.90 16 34 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 35 H 0.02 0.49 7.20 -51.93 -0.37 0.12 16 36 H 0.02 0.38 7.57 -51.93 -0.39 -0.02 16 37 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 38 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 362.58 15.07 5.46 5.46 Total: -1.00 -32.89 362.58 -8.87 -41.76 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -7.85 Total: 1.90 kcal Atomic # 6 Polarization: -8.13 SS G_CDS: -1.66 Total: -9.79 kcal Atomic # 7 Polarization: -39.70 SS G_CDS: 0.44 Total: -39.26 kcal Atomic # 8 Polarization: -15.98 SS G_CDS: -0.59 Total: -16.57 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.67 Total: 16.49 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.89 -8.87 -41.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342616911.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.674 kcal (2) G-P(sol) polarization free energy of solvation -32.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds