Wall clock time and date at job start Tue Mar 31 2020 05:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47629 * 2 1 4 4 C 1.50704 * 109.47199 * 240.00094 * 2 1 3 5 5 H 1.08001 * 119.99621 * 239.99975 * 4 2 1 6 6 C 1.37871 * 119.99832 * 59.99637 * 4 2 1 7 7 N 1.31511 * 120.00387 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99614 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.47332 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47085 * 120.00653 * 8 6 4 11 11 H 1.48508 * 109.47150 * 240.00043 * 8 6 4 12 12 N 1.46499 * 109.47206 * 119.99860 * 2 1 3 13 13 C 1.34780 * 119.99896 * 275.00092 * 12 2 1 14 14 O 1.21279 * 120.00036 * 359.97438 * 13 12 2 15 15 C 1.50699 * 119.99782 * 179.97438 * 13 12 2 16 16 H 1.09001 * 109.41227 * 333.36958 * 15 13 12 17 17 C 1.52959 * 109.41461 * 213.58133 * 15 13 12 18 18 C 1.53229 * 109.40665 * 176.29681 * 17 15 13 19 19 C 1.51267 * 108.53818 * 54.62407 * 18 17 15 20 20 O 1.20760 * 120.84913 * 128.67502 * 19 18 17 21 21 C 1.51267 * 118.30066 * 308.65673 * 19 18 17 22 22 H 1.08995 * 109.62814 * 171.06124 * 21 19 18 23 23 C 1.53010 * 109.78277 * 291.53840 * 21 19 18 24 24 C 1.52958 * 109.41678 * 93.22670 * 15 13 12 25 25 C 1.53004 * 109.47876 * 303.68371 * 24 15 13 26 26 C 1.53001 * 109.48197 * 63.70849 * 24 15 13 27 27 H 1.09007 * 109.47070 * 59.99766 * 1 2 3 28 28 H 1.09003 * 109.46958 * 300.00681 * 1 2 3 29 29 H 1.08995 * 109.47369 * 180.02562 * 1 2 3 30 30 H 0.97004 * 120.00333 * 179.97438 * 7 6 4 31 31 H 0.96996 * 119.99906 * 94.99975 * 12 2 1 32 32 H 1.08999 * 109.47917 * 296.27425 * 17 15 13 33 33 H 1.09004 * 109.48354 * 56.31165 * 17 15 13 34 34 H 1.09004 * 109.62317 * 294.90979 * 18 17 15 35 35 H 1.09004 * 109.62562 * 174.34367 * 18 17 15 36 36 H 1.09000 * 109.46879 * 179.14360 * 23 21 19 37 37 H 1.08998 * 109.46460 * 299.14260 * 23 21 19 38 38 H 1.08995 * 109.47033 * 59.14148 * 23 21 19 39 39 H 1.08998 * 109.47342 * 66.47784 * 25 24 15 40 40 H 1.09007 * 109.46874 * 186.47335 * 25 24 15 41 41 H 1.08990 * 109.47155 * 306.47043 * 25 24 15 42 42 H 1.09003 * 109.46642 * 60.00207 * 26 24 15 43 43 H 1.08995 * 109.47293 * 180.02562 * 26 24 15 44 44 H 1.09005 * 109.47007 * 300.00626 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3213 -1.1204 -4.0079 9 1 3.1454 -2.2877 -3.6037 10 1 1.1660 -1.5867 -4.8161 11 1 3.1466 -0.1874 -4.8165 12 7 2.0183 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3571 14 8 1.8590 1.1587 2.4115 15 6 2.6488 -0.7287 3.5877 16 1 2.4119 -1.7902 3.5151 17 6 1.9701 -0.1414 4.8263 18 6 2.4101 -0.9246 6.0676 19 6 3.9216 -0.9240 6.1259 20 8 4.5024 -0.5914 7.1311 21 6 4.6870 -1.3509 4.8930 22 1 5.7488 -1.1486 5.0329 23 6 4.4772 -2.8461 4.6451 24 6 4.1645 -0.5522 3.6943 25 6 4.8287 -1.0611 2.4133 26 6 4.4934 0.9297 3.8856 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5140 0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 0.7094 1.1618 -3.4844 31 1 2.2490 -1.6317 1.1526 32 1 2.2564 0.9046 4.9360 33 1 0.8880 -0.2126 4.7160 34 1 2.0466 -1.9501 6.0012 35 1 2.0089 -0.4483 6.9622 36 1 5.0183 -3.1450 3.7474 37 1 4.8497 -3.4117 5.4991 38 1 3.4141 -3.0467 4.5122 39 1 4.5449 -0.4211 1.5779 40 1 5.9119 -1.0426 2.5337 41 1 4.5026 -2.0822 2.2159 42 1 4.0205 1.2919 4.7985 43 1 5.5735 1.0553 3.9611 44 1 4.1205 1.4976 3.0332 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343918160.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:30 Heat of formation + Delta-G solvation = -102.346394 kcal Electronic energy + Delta-G solvation = -23774.239239 eV Core-core repulsion = 20497.559867 eV Total energy + Delta-G solvation = -3276.679371 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.09777 -38.94609 -37.06878 -34.82570 -33.18986 -32.40140 -31.45928 -29.30071 -27.59820 -27.09240 -25.27462 -24.72620 -22.92509 -21.36891 -20.36676 -19.41611 -17.98852 -17.12500 -16.08181 -15.89583 -15.71225 -15.33301 -14.85985 -14.69851 -14.25487 -14.03227 -13.59344 -13.46388 -12.90893 -12.79786 -12.50432 -12.41943 -12.37873 -12.02798 -11.85695 -11.75070 -11.64278 -11.49804 -11.28900 -11.09205 -10.98144 -10.79449 -10.71649 -10.54758 -10.34451 -10.26313 -10.22265 -9.38964 -9.05966 -8.90070 -8.56714 -7.90202 -6.14558 -4.23785 1.85575 3.21398 3.29496 3.31438 3.35157 3.91332 4.06263 4.34400 4.43795 4.54898 4.74067 4.93476 4.93711 5.07173 5.17725 5.18609 5.25982 5.37570 5.42696 5.54925 5.58095 5.62880 5.73703 5.80528 5.83059 5.92796 5.96172 6.05084 6.06072 6.18285 6.28347 6.44948 6.50186 6.80630 6.94683 7.13737 7.38354 7.45187 7.54833 7.67764 7.89738 8.13392 8.66273 8.76919 9.12858 9.44356 10.91346 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.028206 B = 0.004598 C = 0.004291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.468955 B = 6088.499702 C = 6523.019792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.264 3.736 3 H 0.048 0.952 4 C -0.532 4.532 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.900 3.100 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.707 5.707 13 C 0.511 3.489 14 O -0.552 6.552 15 C -0.106 4.106 16 H 0.090 0.910 17 C -0.099 4.099 18 C -0.169 4.169 19 C 0.371 3.629 20 O -0.463 6.463 21 C -0.128 4.128 22 H 0.095 0.905 23 C -0.146 4.146 24 C -0.038 4.038 25 C -0.150 4.150 26 C -0.151 4.151 27 H 0.089 0.911 28 H 0.014 0.986 29 H 0.025 0.975 30 H 0.263 0.737 31 H 0.387 0.613 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.099 0.901 35 H 0.089 0.911 36 H 0.075 0.925 37 H 0.057 0.943 38 H 0.066 0.934 39 H 0.073 0.927 40 H 0.057 0.943 41 H 0.062 0.938 42 H 0.055 0.945 43 H 0.054 0.946 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.832 -7.255 12.911 15.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.162 3.838 3 H 0.066 0.934 4 C -0.570 4.570 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.727 3.273 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.354 5.354 13 C 0.295 3.705 14 O -0.431 6.431 15 C -0.127 4.127 16 H 0.108 0.892 17 C -0.137 4.137 18 C -0.207 4.207 19 C 0.247 3.753 20 O -0.336 6.336 21 C -0.147 4.147 22 H 0.114 0.886 23 C -0.203 4.203 24 C -0.039 4.039 25 C -0.207 4.207 26 C -0.208 4.208 27 H 0.108 0.892 28 H 0.033 0.967 29 H 0.044 0.956 30 H 0.073 0.927 31 H 0.220 0.780 32 H 0.102 0.898 33 H 0.097 0.903 34 H 0.117 0.883 35 H 0.108 0.892 36 H 0.094 0.906 37 H 0.076 0.924 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.077 0.923 41 H 0.081 0.919 42 H 0.074 0.926 43 H 0.073 0.927 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 4.835 -6.102 13.294 15.406 hybrid contribution 0.303 -0.976 -1.016 1.441 sum 5.138 -7.078 12.278 15.075 Atomic orbital electron populations 1.22074 0.98597 0.99021 1.00850 1.18721 0.90928 0.93965 0.80139 0.93448 1.21243 1.32320 1.13148 0.90312 0.92066 1.24880 0.94818 0.94933 0.99048 1.69910 1.35942 1.22463 1.23748 0.86426 0.78611 0.79543 0.82700 1.19745 1.20917 1.20906 1.46603 1.64845 1.13453 1.10542 1.20154 0.78348 0.87470 0.84485 1.90649 1.51229 1.16045 1.85159 1.21492 0.95396 1.01127 0.94720 0.89182 1.21420 1.00936 1.00568 0.90798 1.22339 0.94373 1.03188 1.00810 1.24894 0.92059 0.70957 0.87416 1.90386 1.73268 1.36090 1.33851 1.22007 1.01135 0.97313 0.94245 0.88632 1.21859 1.02976 0.92824 1.02682 1.20383 0.93015 0.95989 0.94517 1.22043 1.00273 1.01872 0.96541 1.22049 1.01035 0.94520 1.03195 0.89241 0.96711 0.95551 0.92652 0.78039 0.89770 0.90337 0.88331 0.89211 0.90600 0.92406 0.91537 0.90776 0.92347 0.91906 0.92642 0.92677 0.90486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.55 9.26 37.16 0.34 -3.20 16 2 C 0.26 6.42 2.56 -69.08 -0.18 6.25 16 3 H 0.05 1.35 7.58 -51.93 -0.39 0.95 16 4 C -0.53 -13.53 8.73 -34.44 -0.30 -13.83 16 5 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 6 C 0.07 1.74 5.30 -17.82 -0.09 1.64 16 7 N -0.88 -24.39 11.32 55.43 0.63 -23.76 16 8 Si 0.90 20.15 29.54 -169.99 -5.02 15.13 16 9 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 10 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 12 N -0.71 -13.56 4.41 -54.93 -0.24 -13.81 16 13 C 0.51 9.22 5.11 -10.98 -0.06 9.17 16 14 O -0.55 -12.20 14.81 5.56 0.08 -12.12 16 15 C -0.11 -1.37 1.61 -91.81 -0.15 -1.52 16 16 H 0.09 0.96 6.41 -51.93 -0.33 0.63 16 17 C -0.10 -1.21 4.53 -26.63 -0.12 -1.33 16 18 C -0.17 -1.70 5.90 -27.49 -0.16 -1.86 16 19 C 0.37 4.39 5.10 -28.48 -0.15 4.24 16 20 O -0.46 -6.91 17.89 6.00 0.11 -6.80 16 21 C -0.13 -1.33 2.23 -91.37 -0.20 -1.54 16 22 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 23 C -0.15 -1.21 8.41 37.16 0.31 -0.89 16 24 C -0.04 -0.46 0.32 -154.41 -0.05 -0.51 16 25 C -0.15 -1.82 7.12 37.16 0.26 -1.55 16 26 C -0.15 -2.07 7.56 37.16 0.28 -1.79 16 27 H 0.09 2.37 6.07 -51.93 -0.32 2.06 16 28 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 31 H 0.39 6.42 8.53 -40.82 -0.35 6.07 16 32 H 0.08 1.16 6.03 -51.93 -0.31 0.85 16 33 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.10 0.78 7.81 -51.93 -0.41 0.37 16 35 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.08 0.58 6.51 -51.93 -0.34 0.24 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.50 6.00 -51.93 -0.31 0.19 16 39 H 0.07 1.13 7.05 -51.93 -0.37 0.76 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.06 0.66 6.75 -51.93 -0.35 0.31 16 42 H 0.05 0.76 5.61 -51.93 -0.29 0.47 16 43 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.08 1.27 6.61 -51.93 -0.34 0.92 16 LS Contribution 335.14 15.07 5.05 5.05 Total: -1.00 -30.24 335.14 -6.68 -36.92 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -7.03 Total: 6.11 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: -0.26 Total: -6.72 kcal Atomic # 7 Polarization: -37.95 SS G_CDS: 0.39 Total: -37.57 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: 0.19 Total: -18.92 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.24 -6.68 -36.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343918160.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.425 kcal (2) G-P(sol) polarization free energy of solvation -30.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds