Wall clock time and date at job start Tue Mar 31 2020 05:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47658 * 2 1 4 4 C 1.50700 * 109.47473 * 239.99532 * 2 1 3 5 5 H 1.07997 * 120.00534 * 240.00193 * 4 2 1 6 6 C 1.37877 * 119.99948 * 60.00255 * 4 2 1 7 7 N 1.31512 * 120.00390 * 179.97438 * 6 4 2 8 8 Si 1.86806 * 119.99948 * 359.97438 * 6 4 2 9 9 H 1.48498 * 109.47143 * 270.00307 * 8 6 4 10 10 H 1.48506 * 109.46629 * 30.00400 * 8 6 4 11 11 H 1.48497 * 109.46964 * 149.99702 * 8 6 4 12 12 N 1.46505 * 109.47234 * 119.99577 * 2 1 3 13 13 C 1.34772 * 119.99852 * 275.00646 * 12 2 1 14 14 O 1.21280 * 120.00301 * 359.97438 * 13 12 2 15 15 C 1.50700 * 119.99652 * 179.97438 * 13 12 2 16 16 H 1.08995 * 109.41647 * 27.46809 * 15 13 12 17 17 C 1.52966 * 109.41393 * 147.32262 * 15 13 12 18 18 C 1.53225 * 109.40514 * 183.70302 * 17 15 13 19 19 C 1.51272 * 108.53978 * 305.37183 * 18 17 15 20 20 O 1.20753 * 120.85293 * 231.32423 * 19 18 17 21 21 C 1.51265 * 118.29662 * 51.34855 * 19 18 17 22 22 H 1.08996 * 109.62991 * 188.93916 * 21 19 18 23 23 C 1.53008 * 109.62890 * 68.55947 * 21 19 18 24 24 C 1.52959 * 109.41477 * 267.67441 * 15 13 12 25 25 C 1.52995 * 109.48272 * 296.27633 * 24 15 13 26 26 C 1.52999 * 109.48104 * 56.31983 * 24 15 13 27 27 H 1.08993 * 109.47308 * 300.00665 * 1 2 3 28 28 H 1.08998 * 109.46966 * 60.00488 * 1 2 3 29 29 H 1.08996 * 109.47014 * 179.97438 * 1 2 3 30 30 H 0.97000 * 120.00294 * 179.97438 * 7 6 4 31 31 H 0.96998 * 119.99578 * 94.99816 * 12 2 1 32 32 H 1.08999 * 109.48109 * 303.68312 * 17 15 13 33 33 H 1.08997 * 109.47720 * 63.71111 * 17 15 13 34 34 H 1.08997 * 109.62745 * 65.09083 * 18 17 15 35 35 H 1.09002 * 109.62671 * 185.65676 * 18 17 15 36 36 H 1.08995 * 109.46904 * 59.99351 * 23 21 19 37 37 H 1.09001 * 109.47017 * 180.02562 * 23 21 19 38 38 H 1.08999 * 109.46492 * 299.99979 * 23 21 19 39 39 H 1.08998 * 109.47452 * 59.99884 * 25 24 15 40 40 H 1.09002 * 109.47038 * 180.02562 * 25 24 15 41 41 H 1.09001 * 109.47512 * 299.99590 * 25 24 15 42 42 H 1.09000 * 109.47017 * 55.65446 * 26 24 15 43 43 H 1.09000 * 109.47090 * 175.65600 * 26 24 15 44 44 H 1.09006 * 109.46844 * 295.65436 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1313 6 6 1.6994 -0.2395 -2.4827 7 7 2.1382 -0.8592 -3.5565 8 14 0.6248 1.2789 -2.6542 9 1 -0.8027 0.8725 -2.6999 10 1 0.8471 2.1764 -1.4921 11 1 0.9761 1.9949 -3.9069 12 7 2.0183 -0.6905 1.1963 13 6 2.1469 -0.0181 2.3571 14 8 1.8588 1.1587 2.4115 15 6 2.6487 -0.7286 3.5878 16 1 3.2896 -1.5587 3.2909 17 6 3.4501 0.2496 4.4484 18 6 4.0376 -0.4946 5.6521 19 6 2.9114 -1.1904 6.3839 20 8 2.7662 -1.0496 7.5744 21 6 1.9720 -2.0676 5.5863 22 1 1.1313 -2.3676 6.2119 23 6 2.7190 -3.3108 5.0988 24 6 1.4592 -1.2664 4.3850 25 6 0.6052 -0.0969 4.8787 26 6 0.6134 -2.1741 3.4897 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.9036 -0.5280 -4.4375 31 1 2.2490 -1.6317 1.1527 32 1 4.2585 0.6775 3.8555 33 1 2.7945 1.0470 4.7984 34 1 4.7620 -1.2328 5.3081 35 1 4.5243 0.2161 6.3200 36 1 3.0945 -3.8686 5.9566 37 1 2.0400 -3.9407 4.5242 38 1 3.5549 -3.0082 4.4681 39 1 0.2416 0.4737 4.0241 40 1 -0.2421 -0.4803 5.4471 41 1 1.2079 0.5492 5.5170 42 1 1.2409 -2.9640 3.0768 43 1 -0.1898 -2.6181 4.0777 44 1 0.1866 -1.5868 2.6766 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343918161.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:32 Heat of formation + Delta-G solvation = -93.914337 kcal Electronic energy + Delta-G solvation = -23867.365642 eV Core-core repulsion = 20591.051912 eV Total energy + Delta-G solvation = -3276.313730 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.19459 -39.09068 -37.19421 -35.06025 -33.24841 -32.43183 -31.56572 -30.07173 -27.89144 -27.19629 -25.22189 -24.79283 -23.05785 -21.48448 -20.40487 -19.62492 -18.06540 -17.27084 -16.27757 -16.08745 -15.78340 -15.44848 -15.12028 -14.76552 -14.37414 -14.02998 -13.74998 -13.46451 -13.14589 -12.90394 -12.81578 -12.59060 -12.49555 -12.24189 -12.10056 -11.96873 -11.81330 -11.75063 -11.51876 -11.40219 -11.26089 -10.85261 -10.82089 -10.66363 -10.33461 -10.21326 -9.71741 -9.44432 -9.25764 -9.03602 -8.77841 -8.15794 -6.23537 -4.26064 1.80716 3.16874 3.21505 3.33595 3.37566 3.81465 3.95395 4.29199 4.34944 4.47272 4.64829 4.85016 4.87529 4.98771 5.10564 5.11684 5.20401 5.29598 5.34235 5.47162 5.50224 5.55320 5.65832 5.71741 5.74863 5.84365 5.85992 5.96752 5.98803 6.08995 6.18044 6.27677 6.28744 6.35132 6.40483 6.54186 6.83243 7.16637 7.27503 7.33459 7.49890 8.13025 8.50894 8.73617 8.92358 9.37673 10.88619 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.031064 B = 0.004613 C = 0.004544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.149872 B = 6068.775966 C = 6161.033812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.236 3.764 3 H 0.048 0.952 4 C -0.534 4.534 5 H 0.080 0.920 6 C 0.079 3.921 7 N -0.893 5.893 8 Si 0.885 3.115 9 H -0.277 1.277 10 H -0.262 1.262 11 H -0.295 1.295 12 N -0.699 5.699 13 C 0.513 3.487 14 O -0.553 6.553 15 C -0.106 4.106 16 H 0.094 0.906 17 C -0.099 4.099 18 C -0.170 4.170 19 C 0.371 3.629 20 O -0.462 6.462 21 C -0.127 4.127 22 H 0.096 0.904 23 C -0.147 4.147 24 C -0.039 4.039 25 C -0.151 4.151 26 C -0.152 4.152 27 H 0.035 0.965 28 H 0.046 0.954 29 H 0.052 0.948 30 H 0.267 0.733 31 H 0.394 0.606 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.100 0.900 35 H 0.090 0.910 36 H 0.058 0.942 37 H 0.075 0.925 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.055 0.945 41 H 0.056 0.944 42 H 0.064 0.936 43 H 0.059 0.941 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.661 -4.095 16.264 16.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.133 3.867 3 H 0.065 0.935 4 C -0.572 4.572 5 H 0.098 0.902 6 C -0.125 4.125 7 N -0.529 5.529 8 Si 0.715 3.285 9 H -0.203 1.203 10 H -0.187 1.187 11 H -0.222 1.222 12 N -0.347 5.347 13 C 0.298 3.702 14 O -0.432 6.432 15 C -0.127 4.127 16 H 0.112 0.888 17 C -0.137 4.137 18 C -0.207 4.207 19 C 0.246 3.754 20 O -0.335 6.335 21 C -0.147 4.147 22 H 0.114 0.886 23 C -0.204 4.204 24 C -0.040 4.040 25 C -0.208 4.208 26 C -0.209 4.209 27 H 0.054 0.946 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.228 0.772 32 H 0.098 0.902 33 H 0.102 0.898 34 H 0.118 0.882 35 H 0.109 0.891 36 H 0.077 0.923 37 H 0.094 0.906 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.083 0.917 43 H 0.078 0.922 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.379 -3.178 16.690 16.995 hybrid contribution -0.472 0.221 -0.463 0.697 sum -0.093 -2.957 16.227 16.495 Atomic orbital electron populations 1.22446 0.99397 1.00766 0.99254 1.19084 0.90052 0.94668 0.82929 0.93459 1.21034 1.33245 1.14390 0.88549 0.90238 1.24828 0.95475 0.96641 0.95555 1.69864 1.44893 1.40129 0.98056 0.86886 0.80539 0.83668 0.77435 1.20348 1.18697 1.22196 1.46279 1.64972 1.13709 1.09749 1.20222 0.78302 0.87298 0.84385 1.90646 1.51273 1.16077 1.85162 1.21484 0.97481 0.99268 0.94492 0.88814 1.21420 1.00065 0.97737 0.94508 1.22340 0.98064 1.01254 0.99076 1.24895 0.84420 0.77740 0.88326 1.90387 1.70010 1.55605 1.17510 1.22001 0.98975 0.96184 0.97496 0.88595 1.21869 1.00969 0.95960 1.01636 1.20386 0.94557 0.95481 0.93528 1.22045 0.99232 0.97321 1.02199 1.22073 0.99626 0.99541 0.99702 0.94604 0.93549 0.92850 0.92293 0.77231 0.90170 0.89795 0.88208 0.89142 0.92308 0.90590 0.91431 0.90705 0.92604 0.92520 0.91658 0.92199 0.91079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.43 8.96 37.16 0.33 -3.10 16 2 C 0.24 5.37 2.15 -69.08 -0.15 5.22 16 3 H 0.05 1.20 6.64 -51.93 -0.34 0.86 16 4 C -0.53 -13.93 9.31 -34.44 -0.32 -14.25 16 5 H 0.08 2.18 7.98 -52.49 -0.42 1.76 16 6 C 0.08 2.16 5.45 -17.82 -0.10 2.06 16 7 N -0.89 -25.93 13.96 55.43 0.77 -25.15 16 8 Si 0.88 21.39 24.37 -169.99 -4.14 17.24 16 9 H -0.28 -6.48 6.87 56.52 0.39 -6.09 16 10 H -0.26 -6.31 6.53 56.52 0.37 -5.94 16 11 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 12 N -0.70 -12.73 4.28 -54.93 -0.23 -12.97 16 13 C 0.51 8.69 5.11 -10.99 -0.06 8.64 16 14 O -0.55 -11.39 14.85 5.56 0.08 -11.31 16 15 C -0.11 -1.29 1.61 -91.81 -0.15 -1.43 16 16 H 0.09 0.95 6.40 -51.93 -0.33 0.62 16 17 C -0.10 -1.15 4.51 -26.63 -0.12 -1.27 16 18 C -0.17 -1.63 5.90 -27.49 -0.16 -1.79 16 19 C 0.37 4.17 5.09 -28.48 -0.14 4.02 16 20 O -0.46 -6.65 17.89 6.00 0.11 -6.55 16 21 C -0.13 -1.24 2.23 -91.37 -0.20 -1.44 16 22 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 23 C -0.15 -1.14 8.39 37.16 0.31 -0.83 16 24 C -0.04 -0.43 0.32 -154.41 -0.05 -0.48 16 25 C -0.15 -1.88 7.57 37.15 0.28 -1.60 16 26 C -0.15 -1.64 7.25 37.16 0.27 -1.37 16 27 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.05 1.04 3.27 -51.93 -0.17 0.87 16 29 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 31 H 0.39 6.30 8.53 -40.82 -0.35 5.95 16 32 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.08 1.09 6.03 -51.93 -0.31 0.78 16 34 H 0.10 0.75 7.82 -51.93 -0.41 0.35 16 35 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.08 0.53 6.53 -51.93 -0.34 0.20 16 38 H 0.07 0.48 6.00 -51.93 -0.31 0.17 16 39 H 0.07 1.11 6.64 -51.93 -0.35 0.76 16 40 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.06 0.72 5.61 -51.93 -0.29 0.43 16 42 H 0.06 0.61 6.66 -51.93 -0.35 0.27 16 43 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 44 H 0.07 0.93 6.87 -51.93 -0.36 0.58 16 LS Contribution 328.13 15.07 4.94 4.94 Total: -1.00 -31.27 328.13 -5.61 -36.88 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -6.89 Total: 4.53 kcal Atomic # 6 Polarization: -7.36 SS G_CDS: -0.26 Total: -7.62 kcal Atomic # 7 Polarization: -38.66 SS G_CDS: 0.54 Total: -38.12 kcal Atomic # 8 Polarization: -18.05 SS G_CDS: 0.19 Total: -17.86 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.14 Total: 17.24 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.27 -5.61 -36.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343918161.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.035 kcal (2) G-P(sol) polarization free energy of solvation -31.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds