Wall clock time and date at job start Tue Mar 31 2020 06:22:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42896 * 114.00317 * 2 1 4 4 H 1.08996 * 109.47175 * 29.99974 * 3 2 1 5 5 C 1.52998 * 109.47092 * 269.99992 * 3 2 1 6 6 C 1.52998 * 109.47185 * 179.97438 * 5 3 2 7 7 C 1.52998 * 109.46876 * 60.00334 * 6 5 3 8 8 C 1.53004 * 109.47064 * 299.99524 * 7 6 5 9 9 H 1.08996 * 109.47272 * 300.00279 * 8 7 6 10 10 C 1.50701 * 109.47187 * 179.97438 * 8 7 6 11 11 O 1.21281 * 120.00412 * 273.68976 * 10 8 7 12 12 N 1.34774 * 119.99721 * 93.69073 * 10 8 7 13 13 C 1.46505 * 120.00235 * 185.03857 * 12 10 8 14 14 C 1.52998 * 109.47332 * 185.18379 * 13 12 10 15 15 C 1.50709 * 115.54542 * 276.53941 * 14 13 12 16 16 H 1.08001 * 119.99595 * 93.47277 * 15 14 13 17 17 C 1.37873 * 120.00067 * 273.46888 * 15 14 13 18 18 N 1.31516 * 119.99828 * 8.47420 * 17 15 14 19 19 Si 1.86793 * 119.99957 * 188.47625 * 17 15 14 20 20 H 1.48497 * 109.47455 * 359.97438 * 19 17 15 21 21 H 1.48508 * 109.47008 * 119.99713 * 19 17 15 22 22 H 1.48503 * 109.47104 * 239.99660 * 19 17 15 23 23 C 1.52995 * 117.50126 * 130.83159 * 14 13 12 24 24 C 1.52995 * 60.00172 * 252.50811 * 23 14 13 25 25 C 1.52998 * 109.47125 * 150.00231 * 3 2 1 26 26 H 1.09005 * 109.46632 * 300.00247 * 1 2 3 27 27 H 1.09002 * 109.46654 * 59.99523 * 1 2 3 28 28 H 1.08995 * 109.47194 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47096 * 300.00031 * 5 3 2 30 30 H 1.09004 * 109.47180 * 59.99955 * 5 3 2 31 31 H 1.09006 * 109.47346 * 179.97438 * 6 5 3 32 32 H 1.08996 * 109.47331 * 300.00134 * 6 5 3 33 33 H 1.09007 * 109.47129 * 180.02562 * 7 6 5 34 34 H 1.08996 * 109.47303 * 59.99784 * 7 6 5 35 35 H 0.97008 * 120.00222 * 5.03510 * 12 10 8 36 36 H 1.08996 * 109.46594 * 305.18411 * 13 12 10 37 37 H 1.08997 * 109.46800 * 65.17559 * 13 12 10 38 38 H 0.97006 * 119.99816 * 185.01279 * 18 17 15 39 39 H 1.08995 * 117.49830 * 0.02562 * 23 14 13 40 40 H 1.09003 * 117.50013 * 145.01790 * 23 14 13 41 41 H 1.08997 * 117.49806 * 252.50939 * 24 23 14 42 42 H 1.08996 * 117.49859 * 107.48643 * 24 23 14 43 43 H 1.09006 * 109.46820 * 299.99976 * 25 3 2 44 44 H 1.08996 * 109.47303 * 59.99822 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3452 1.9993 0.5138 5 6 2.2178 1.7713 -1.4425 6 6 2.8396 3.1692 -1.4425 7 6 4.1882 3.1275 -0.7211 8 6 3.9808 2.6616 0.7214 9 1 3.3152 3.3553 1.2351 10 6 5.3092 2.6199 1.4318 11 8 6.0051 1.6293 1.3588 12 7 5.7239 3.6835 2.1482 13 6 7.0609 3.6871 2.7471 14 6 7.2315 4.9413 3.6066 15 6 7.6383 6.1878 2.8637 16 1 6.8848 6.8773 2.5126 17 6 8.9723 6.4481 2.6324 18 7 9.8779 5.5353 2.9090 19 14 9.4935 8.0970 1.9264 20 1 8.2928 8.9422 1.7043 21 1 10.4084 8.7764 2.8787 22 1 10.1936 7.8833 0.6343 23 6 7.7707 4.7567 5.0264 24 6 6.2977 5.1073 4.8072 25 6 3.3590 1.2631 0.7212 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 2.8830 1.0773 -1.9563 30 1 1.2570 1.8014 -1.9563 31 1 2.9878 3.5010 -2.4702 32 1 2.1741 3.8629 -0.9288 33 1 4.6310 4.1235 -0.7207 34 1 4.8537 2.4338 -1.2348 35 1 5.1371 4.4467 2.2674 36 1 7.1825 2.8007 3.3696 37 1 7.8125 3.6824 1.9577 38 1 10.8207 5.7435 2.8152 39 1 8.0044 3.7419 5.3481 40 1 8.4200 5.5370 5.4236 41 1 5.9779 6.1182 5.0600 42 1 5.5619 4.3231 4.9847 43 1 3.2112 0.9311 1.7489 44 1 4.0242 0.5692 0.2074 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352645848.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:47 Heat of formation + Delta-G solvation = -86.383617 kcal Electronic energy + Delta-G solvation = -22535.435767 eV Core-core repulsion = 19259.448594 eV Total energy + Delta-G solvation = -3275.987173 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.98699 -38.52524 -36.84770 -36.04954 -33.28155 -31.97363 -31.07441 -30.14721 -26.63039 -26.53201 -25.26942 -23.06509 -22.45352 -21.26339 -20.24491 -19.59061 -19.15655 -17.23735 -16.26141 -16.10024 -15.63259 -15.27770 -14.89955 -14.79349 -14.54504 -14.41577 -13.93401 -13.58643 -13.48844 -13.12166 -12.65900 -12.45735 -12.30323 -11.90773 -11.69098 -11.52284 -11.41489 -11.14269 -11.09483 -10.90316 -10.76178 -10.59755 -10.55314 -10.53354 -10.30033 -9.74255 -9.66595 -9.19288 -8.95263 -8.48900 -8.22796 -8.17260 -6.10913 -4.18221 3.13937 3.24238 3.33655 3.35794 3.47703 3.93236 4.35229 4.60886 4.65163 4.83838 4.96209 5.02749 5.14778 5.15953 5.18449 5.21642 5.27317 5.34178 5.34996 5.44578 5.47758 5.59842 5.81174 5.89071 5.94891 6.01975 6.09148 6.11506 6.24395 6.32995 6.33911 6.42513 6.61191 6.65359 6.86569 7.06288 7.06930 7.24873 7.42055 7.49252 7.79810 8.25739 8.32723 8.81291 8.87654 9.48919 10.97951 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.025004 B = 0.003733 C = 0.003477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.534384 B = 7498.331670 C = 8050.507726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.091 3.909 4 H 0.060 0.940 5 C -0.141 4.141 6 C -0.113 4.113 7 C -0.111 4.111 8 C -0.100 4.100 9 H 0.086 0.914 10 C 0.509 3.491 11 O -0.553 6.553 12 N -0.708 5.708 13 C 0.162 3.838 14 C 0.028 3.972 15 C -0.499 4.499 16 H 0.061 0.939 17 C 0.073 3.927 18 N -0.873 5.873 19 Si 0.888 3.112 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.284 1.284 23 C -0.148 4.148 24 C -0.210 4.210 25 C -0.098 4.098 26 H 0.040 0.960 27 H 0.039 0.961 28 H 0.083 0.917 29 H 0.073 0.927 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.398 0.602 36 H 0.041 0.959 37 H 0.071 0.929 38 H 0.261 0.739 39 H 0.065 0.935 40 H 0.083 0.917 41 H 0.078 0.922 42 H 0.065 0.935 43 H 0.070 0.930 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.039 -4.889 -5.827 18.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.303 6.303 3 C 0.033 3.967 4 H 0.078 0.922 5 C -0.179 4.179 6 C -0.151 4.151 7 C -0.149 4.149 8 C -0.122 4.122 9 H 0.104 0.896 10 C 0.294 3.706 11 O -0.431 6.431 12 N -0.357 5.357 13 C 0.039 3.961 14 C 0.027 3.973 15 C -0.537 4.537 16 H 0.079 0.921 17 C -0.131 4.131 18 N -0.509 5.509 19 Si 0.715 3.285 20 H -0.197 1.197 21 H -0.209 1.209 22 H -0.210 1.210 23 C -0.186 4.186 24 C -0.247 4.247 25 C -0.136 4.136 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.102 0.898 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.231 0.769 36 H 0.059 0.941 37 H 0.090 0.910 38 H 0.071 0.929 39 H 0.083 0.917 40 H 0.101 0.899 41 H 0.097 0.903 42 H 0.084 0.916 43 H 0.088 0.912 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -16.182 -5.812 -5.942 18.192 hybrid contribution -0.025 1.536 -0.191 1.548 sum -16.208 -4.276 -6.133 17.849 Atomic orbital electron populations 1.22768 0.81460 1.02537 0.99792 1.87932 1.19287 1.28040 1.95053 1.22154 0.94855 0.84162 0.95503 0.92188 1.22053 1.01221 0.97517 0.97118 1.21476 0.96442 0.96292 1.00880 1.21502 0.97710 1.02415 0.93238 1.21218 0.95293 0.98327 0.97360 0.89560 1.20388 0.87626 0.83286 0.79320 1.90663 1.57317 1.32402 1.62738 1.46170 1.18522 1.18877 1.52115 1.21128 0.81543 0.96689 0.96747 1.19070 0.97892 0.94019 0.86277 1.20425 0.91859 1.04796 1.36602 0.92127 1.24974 0.96771 0.96393 0.94996 1.70045 1.00879 1.32044 1.47884 0.86618 0.78714 0.84326 0.78832 1.19712 1.20930 1.21030 1.22510 0.94177 0.99726 1.02235 1.22976 0.93142 1.00156 1.08438 1.21396 0.94730 0.96152 1.01341 0.94124 0.94226 0.89821 0.90864 0.92034 0.91225 0.91727 0.90762 0.90887 0.76877 0.94052 0.91046 0.92918 0.91662 0.89873 0.90297 0.91635 0.91158 0.89736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.82 101.05 1.09 1.35 16 2 O -0.38 -4.53 10.35 -35.23 -0.36 -4.90 16 3 C 0.09 0.99 2.61 -26.73 -0.07 0.92 16 4 H 0.06 0.57 7.79 -51.93 -0.40 0.17 16 5 C -0.14 -1.38 5.54 -26.73 -0.15 -1.53 16 6 C -0.11 -1.06 5.92 -26.73 -0.16 -1.22 16 7 C -0.11 -1.34 5.19 -26.73 -0.14 -1.47 16 8 C -0.10 -1.33 2.53 -91.74 -0.23 -1.56 16 9 H 0.09 0.96 8.10 -51.93 -0.42 0.54 16 10 C 0.51 9.19 6.84 -10.99 -0.08 9.12 16 11 O -0.55 -12.21 16.22 5.56 0.09 -12.12 16 12 N -0.71 -13.24 5.47 -60.29 -0.33 -13.57 16 13 C 0.16 3.67 5.63 -4.04 -0.02 3.65 16 14 C 0.03 0.66 1.38 -155.66 -0.21 0.44 16 15 C -0.50 -12.84 8.81 -34.44 -0.30 -13.14 16 16 H 0.06 1.54 7.83 -52.49 -0.41 1.13 16 17 C 0.07 1.92 5.37 -17.82 -0.10 1.83 16 18 N -0.87 -24.20 12.93 55.43 0.72 -23.48 16 19 Si 0.89 20.44 29.55 -169.99 -5.02 15.41 16 20 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 C -0.15 -3.37 9.36 -26.74 -0.25 -3.62 16 24 C -0.21 -4.27 9.83 -26.73 -0.26 -4.53 16 25 C -0.10 -1.29 4.50 -26.71 -0.12 -1.41 16 26 H 0.04 0.29 8.09 -51.93 -0.42 -0.13 16 27 H 0.04 0.28 7.87 -51.93 -0.41 -0.13 16 28 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.06 0.52 7.87 -51.93 -0.41 0.11 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.40 6.59 8.41 -40.82 -0.34 6.25 16 36 H 0.04 0.96 7.87 -51.93 -0.41 0.56 16 37 H 0.07 1.86 8.10 -51.93 -0.42 1.44 16 38 H 0.26 6.94 8.32 -40.82 -0.34 6.60 16 39 H 0.06 1.42 8.06 -51.93 -0.42 1.01 16 40 H 0.08 2.00 8.14 -51.93 -0.42 1.58 16 41 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 42 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 43 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.08 1.28 7.85 -51.93 -0.41 0.87 16 LS Contribution 357.73 15.07 5.39 5.39 Total: -1.00 -29.87 357.73 -8.35 -38.22 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: -7.84 Total: 6.22 kcal Atomic # 6 Polarization: -10.19 SS G_CDS: -1.00 Total: -11.19 kcal Atomic # 7 Polarization: -37.44 SS G_CDS: 0.39 Total: -37.05 kcal Atomic # 8 Polarization: -16.74 SS G_CDS: -0.27 Total: -17.01 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.87 -8.35 -38.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352645848.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.162 kcal (2) G-P(sol) polarization free energy of solvation -29.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds