Wall clock time and date at job start Tue Mar 31 2020 06:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42896 * 114.00317 * 2 1 4 4 H 1.08996 * 109.47175 * 29.99974 * 3 2 1 5 5 C 1.52998 * 109.47092 * 269.99992 * 3 2 1 6 6 C 1.52998 * 109.47185 * 179.97438 * 5 3 2 7 7 C 1.52998 * 109.46876 * 60.00334 * 6 5 3 8 8 C 1.53004 * 109.47064 * 299.99524 * 7 6 5 9 9 H 1.08996 * 109.47272 * 300.00279 * 8 7 6 10 10 C 1.50701 * 109.47187 * 179.97438 * 8 7 6 11 11 O 1.21281 * 120.00412 * 273.68976 * 10 8 7 12 12 N 1.34774 * 119.99721 * 93.69073 * 10 8 7 13 13 C 1.46505 * 120.00235 * 185.03857 * 12 10 8 14 14 C 1.52998 * 109.47332 * 185.18379 * 13 12 10 15 15 C 1.50709 * 115.54542 * 276.53941 * 14 13 12 16 16 H 1.08001 * 119.99595 * 93.47277 * 15 14 13 17 17 C 1.37873 * 120.00067 * 273.46888 * 15 14 13 18 18 N 1.31516 * 119.99828 * 8.47420 * 17 15 14 19 19 Si 1.86793 * 119.99957 * 188.47625 * 17 15 14 20 20 H 1.48497 * 109.47455 * 359.97438 * 19 17 15 21 21 H 1.48508 * 109.47008 * 119.99713 * 19 17 15 22 22 H 1.48503 * 109.47104 * 239.99660 * 19 17 15 23 23 C 1.52995 * 117.50126 * 130.83159 * 14 13 12 24 24 C 1.52995 * 60.00172 * 252.50811 * 23 14 13 25 25 C 1.52998 * 109.47125 * 150.00231 * 3 2 1 26 26 H 1.09005 * 109.46632 * 300.00247 * 1 2 3 27 27 H 1.09002 * 109.46654 * 59.99523 * 1 2 3 28 28 H 1.08995 * 109.47194 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47096 * 300.00031 * 5 3 2 30 30 H 1.09004 * 109.47180 * 59.99955 * 5 3 2 31 31 H 1.09006 * 109.47346 * 179.97438 * 6 5 3 32 32 H 1.08996 * 109.47331 * 300.00134 * 6 5 3 33 33 H 1.09007 * 109.47129 * 180.02562 * 7 6 5 34 34 H 1.08996 * 109.47303 * 59.99784 * 7 6 5 35 35 H 0.97008 * 120.00222 * 5.03510 * 12 10 8 36 36 H 1.08996 * 109.46594 * 305.18411 * 13 12 10 37 37 H 1.08997 * 109.46800 * 65.17559 * 13 12 10 38 38 H 0.97006 * 119.99816 * 185.01279 * 18 17 15 39 39 H 1.08995 * 117.49830 * 0.02562 * 23 14 13 40 40 H 1.09003 * 117.50013 * 145.01790 * 23 14 13 41 41 H 1.08997 * 117.49806 * 252.50939 * 24 23 14 42 42 H 1.08996 * 117.49859 * 107.48643 * 24 23 14 43 43 H 1.09006 * 109.46820 * 299.99976 * 25 3 2 44 44 H 1.08996 * 109.47303 * 59.99822 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3452 1.9993 0.5138 5 6 2.2178 1.7713 -1.4425 6 6 2.8396 3.1692 -1.4425 7 6 4.1882 3.1275 -0.7211 8 6 3.9808 2.6616 0.7214 9 1 3.3152 3.3553 1.2351 10 6 5.3092 2.6199 1.4318 11 8 6.0051 1.6293 1.3588 12 7 5.7239 3.6835 2.1482 13 6 7.0609 3.6871 2.7471 14 6 7.2315 4.9413 3.6066 15 6 7.6383 6.1878 2.8637 16 1 6.8848 6.8773 2.5126 17 6 8.9723 6.4481 2.6324 18 7 9.8779 5.5353 2.9090 19 14 9.4935 8.0970 1.9264 20 1 8.2928 8.9422 1.7043 21 1 10.4084 8.7764 2.8787 22 1 10.1936 7.8833 0.6343 23 6 7.7707 4.7567 5.0264 24 6 6.2977 5.1073 4.8072 25 6 3.3590 1.2631 0.7212 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 2.8830 1.0773 -1.9563 30 1 1.2570 1.8014 -1.9563 31 1 2.9878 3.5010 -2.4702 32 1 2.1741 3.8629 -0.9288 33 1 4.6310 4.1235 -0.7207 34 1 4.8537 2.4338 -1.2348 35 1 5.1371 4.4467 2.2674 36 1 7.1825 2.8007 3.3696 37 1 7.8125 3.6824 1.9577 38 1 10.8207 5.7435 2.8152 39 1 8.0044 3.7419 5.3481 40 1 8.4200 5.5370 5.4236 41 1 5.9779 6.1182 5.0600 42 1 5.5619 4.3231 4.9847 43 1 3.2112 0.9311 1.7489 44 1 4.0242 0.5692 0.2074 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352645848.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:46 Heat of formation + Delta-G solvation = -104.862105 kcal Electronic energy + Delta-G solvation = -22536.237054 eV Core-core repulsion = 19259.448594 eV Total energy + Delta-G solvation = -3276.788461 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.24325 -39.66960 -38.50614 -37.08395 -34.95750 -33.94963 -32.07246 -31.04996 -28.28353 -27.29442 -27.15069 -24.24100 -23.33107 -22.99232 -21.34499 -21.24029 -20.62040 -18.58393 -17.86686 -17.28858 -16.67836 -16.63218 -16.32276 -16.14774 -15.96993 -15.43003 -15.39866 -14.92644 -14.64433 -14.33473 -14.11416 -13.69730 -13.48225 -13.39669 -13.03479 -13.01355 -12.79904 -12.61533 -12.39697 -12.31686 -12.05280 -12.01234 -11.67791 -11.53497 -11.46571 -11.45808 -10.87786 -10.79379 -10.47654 -10.35858 -10.00001 -9.89167 -8.12160 -6.24235 1.41601 1.45318 1.54896 1.68786 2.27678 2.43399 2.88758 3.17803 3.46844 3.66832 3.71570 3.91044 4.11603 4.14912 4.21476 4.28622 4.36425 4.44547 4.45488 4.55508 4.57653 4.59442 4.61542 4.64204 4.75377 4.88840 4.95718 4.97578 5.02833 5.06510 5.13317 5.18187 5.22333 5.25213 5.28803 5.44443 5.56792 5.61301 5.67284 5.77856 6.34066 6.36007 6.75296 6.84746 7.38040 7.45830 8.96832 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.025004 B = 0.003733 C = 0.003477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.534384 B = 7498.331670 C = 8050.507726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.413 6.413 3 C 0.095 3.905 4 H 0.084 0.916 5 C -0.139 4.139 6 C -0.104 4.104 7 C -0.111 4.111 8 C -0.088 4.088 9 H 0.121 0.879 10 C 0.505 3.495 11 O -0.599 6.599 12 N -0.701 5.701 13 C 0.179 3.821 14 C 0.006 3.994 15 C -0.505 4.505 16 H 0.064 0.936 17 C 0.023 3.977 18 N -0.908 5.908 19 Si 0.949 3.051 20 H -0.260 1.260 21 H -0.283 1.283 22 H -0.289 1.289 23 C -0.162 4.162 24 C -0.171 4.171 25 C -0.096 4.096 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.092 0.908 29 H 0.055 0.945 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.073 0.927 34 H 0.049 0.951 35 H 0.411 0.589 36 H 0.028 0.972 37 H 0.027 0.973 38 H 0.259 0.741 39 H 0.067 0.933 40 H 0.064 0.936 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.061 0.939 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.213 -3.336 -6.293 21.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.332 6.332 3 C 0.037 3.963 4 H 0.102 0.898 5 C -0.176 4.176 6 C -0.142 4.142 7 C -0.149 4.149 8 C -0.109 4.109 9 H 0.139 0.861 10 C 0.293 3.707 11 O -0.480 6.480 12 N -0.350 5.350 13 C 0.055 3.945 14 C 0.005 3.995 15 C -0.542 4.542 16 H 0.083 0.917 17 C -0.178 4.178 18 N -0.546 5.546 19 Si 0.775 3.225 20 H -0.184 1.184 21 H -0.209 1.209 22 H -0.215 1.215 23 C -0.200 4.200 24 C -0.208 4.208 25 C -0.134 4.134 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.110 0.890 29 H 0.074 0.926 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.106 0.894 33 H 0.092 0.908 34 H 0.068 0.932 35 H 0.248 0.752 36 H 0.047 0.953 37 H 0.046 0.954 38 H 0.068 0.932 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.080 0.920 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -19.404 -4.231 -6.410 20.869 hybrid contribution 0.953 0.974 -0.035 1.364 sum -18.451 -3.256 -6.445 19.814 Atomic orbital electron populations 1.22977 0.79535 1.03640 1.01012 1.87897 1.21464 1.28629 1.95240 1.22120 0.93567 0.84546 0.96027 0.89820 1.22036 1.01941 0.97268 0.96394 1.21448 0.94699 0.96533 1.01482 1.21524 0.99390 1.01563 0.92384 1.21222 0.92540 0.99374 0.97752 0.86055 1.21335 0.88982 0.82036 0.78377 1.90642 1.59164 1.34158 1.64060 1.46020 1.17172 1.19758 1.52056 1.20608 0.82631 0.96078 0.95173 1.19058 1.00301 0.93424 0.86711 1.20761 0.91940 1.05401 1.36125 0.91738 1.25717 0.97090 0.99377 0.95605 1.70169 1.00944 1.33761 1.49686 0.85650 0.78493 0.80690 0.77661 1.18398 1.20922 1.21528 1.22453 0.96103 0.99351 1.02143 1.22969 0.91935 1.01475 1.04446 1.21342 0.95939 0.95262 1.00880 0.93061 0.92737 0.88976 0.92620 0.89883 0.89917 0.89428 0.90789 0.93174 0.75242 0.95334 0.95406 0.93232 0.91449 0.91763 0.89178 0.89192 0.92039 0.92801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 10.82 113.37 1.23 1.56 16 2 O -0.41 -9.05 10.35 -148.98 -1.54 -10.59 16 3 C 0.09 1.84 2.61 30.59 0.08 1.92 16 4 H 0.08 1.24 7.79 -2.39 -0.02 1.23 16 5 C -0.14 -2.34 5.54 30.59 0.17 -2.17 16 6 C -0.10 -1.61 5.92 30.59 0.18 -1.43 16 7 C -0.11 -2.51 5.19 30.59 0.16 -2.35 16 8 C -0.09 -2.19 2.53 -11.52 -0.03 -2.22 16 9 H 0.12 2.23 8.10 -2.39 -0.02 2.21 16 10 C 0.51 18.33 6.84 87.66 0.60 18.93 16 11 O -0.60 -27.56 16.22 -3.03 -0.05 -27.60 16 12 N -0.70 -25.88 5.47 -463.06 -2.53 -28.41 16 13 C 0.18 8.34 5.63 86.38 0.49 8.83 16 14 C 0.01 0.27 1.38 -52.93 -0.07 0.20 16 15 C -0.50 -25.76 8.81 25.60 0.23 -25.53 16 16 H 0.06 3.17 7.83 -2.91 -0.02 3.15 16 17 C 0.02 1.20 5.37 84.65 0.45 1.66 16 18 N -0.91 -51.66 12.93 21.45 0.28 -51.38 16 19 Si 0.95 42.01 29.55 68.60 2.03 44.04 16 20 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 21 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 22 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 23 C -0.16 -7.39 9.36 30.59 0.29 -7.10 16 24 C -0.17 -6.61 9.83 30.59 0.30 -6.31 16 25 C -0.10 -2.47 4.50 30.61 0.14 -2.33 16 26 H 0.05 0.58 8.09 -2.38 -0.02 0.57 16 27 H 0.05 0.58 7.87 -2.39 -0.02 0.56 16 28 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.08 1.09 7.87 -2.39 -0.02 1.07 16 31 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 32 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 34 H 0.05 1.35 8.14 -2.39 -0.02 1.34 16 35 H 0.41 12.82 8.41 -92.70 -0.78 12.04 16 36 H 0.03 1.37 7.87 -2.39 -0.02 1.36 16 37 H 0.03 1.52 8.10 -2.39 -0.02 1.50 16 38 H 0.26 14.15 8.32 -92.70 -0.77 13.38 16 39 H 0.07 2.98 8.06 -2.39 -0.02 2.96 16 40 H 0.06 3.14 8.14 -2.39 -0.02 3.12 16 41 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 42 H 0.09 3.05 8.14 -2.39 -0.02 3.03 16 43 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 44 H 0.05 1.70 7.85 -2.39 -0.02 1.68 16 Total: -1.00 -66.97 357.73 2.57 -64.40 By element: Atomic # 1 Polarization: 25.73 SS G_CDS: 0.18 Total: 25.91 kcal Atomic # 6 Polarization: -20.56 SS G_CDS: 4.20 Total: -16.36 kcal Atomic # 7 Polarization: -77.54 SS G_CDS: -2.26 Total: -79.80 kcal Atomic # 8 Polarization: -36.60 SS G_CDS: -1.59 Total: -38.19 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.04 kcal Total: -66.97 2.57 -64.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352645848.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.461 kcal (2) G-P(sol) polarization free energy of solvation -66.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds