Wall clock time and date at job start Tue Mar 31 2020 06:22:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 114.00145 * 2 1 4 4 H 1.08991 * 109.47382 * 329.99797 * 3 2 1 5 5 C 1.53002 * 109.47121 * 89.99805 * 3 2 1 6 6 C 1.52997 * 109.47281 * 180.02562 * 5 3 2 7 7 C 1.53003 * 109.46667 * 299.99525 * 6 5 3 8 8 C 1.53002 * 109.46882 * 60.00230 * 7 6 5 9 9 H 1.09008 * 109.46674 * 179.97438 * 8 7 6 10 10 C 1.50702 * 109.47361 * 60.00002 * 8 7 6 11 11 O 1.21273 * 119.99715 * 231.43150 * 10 8 7 12 12 N 1.34776 * 120.00012 * 51.43261 * 10 8 7 13 13 C 1.46495 * 119.99985 * 185.02923 * 12 10 8 14 14 C 1.52998 * 109.47383 * 181.84919 * 13 12 10 15 15 C 1.50702 * 115.55123 * 294.62400 * 14 13 12 16 16 H 1.07993 * 120.00024 * 93.03725 * 15 14 13 17 17 C 1.37877 * 119.99656 * 273.04051 * 15 14 13 18 18 N 1.31512 * 119.99967 * 184.29870 * 17 15 14 19 19 Si 1.86803 * 120.00306 * 4.29399 * 17 15 14 20 20 H 1.48498 * 109.46864 * 272.43992 * 19 17 15 21 21 H 1.48496 * 109.47076 * 152.43749 * 19 17 15 22 22 H 1.48503 * 109.46678 * 32.43659 * 19 17 15 23 23 C 1.53004 * 117.49619 * 80.28782 * 14 13 12 24 24 C 1.53000 * 117.49992 * 148.94930 * 14 13 12 25 25 C 1.52997 * 109.47281 * 299.99393 * 8 7 6 26 26 H 1.09004 * 109.46709 * 59.99968 * 1 2 3 27 27 H 1.09002 * 109.47144 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47336 * 300.00288 * 1 2 3 29 29 H 1.09002 * 109.47435 * 59.99989 * 5 3 2 30 30 H 1.09011 * 109.47157 * 299.99999 * 5 3 2 31 31 H 1.08995 * 109.47192 * 180.02562 * 6 5 3 32 32 H 1.08993 * 109.47239 * 59.99360 * 6 5 3 33 33 H 1.09002 * 109.47269 * 299.99904 * 7 6 5 34 34 H 1.09000 * 109.47021 * 179.97438 * 7 6 5 35 35 H 0.97002 * 120.00297 * 5.01970 * 12 10 8 36 36 H 1.09000 * 109.47516 * 61.85111 * 13 12 10 37 37 H 1.08999 * 109.47348 * 301.84858 * 13 12 10 38 38 H 0.96998 * 120.00561 * 180.02562 * 18 17 15 39 39 H 1.08999 * 117.50131 * 215.00025 * 23 14 13 40 40 H 1.08998 * 117.49977 * 0.03183 * 23 14 13 41 41 H 1.08998 * 117.49706 * 359.97438 * 24 14 13 42 42 H 1.08997 * 117.49709 * 144.99980 * 24 14 13 43 43 H 1.08995 * 109.47192 * 179.97438 * 25 8 7 44 44 H 1.09002 * 109.47198 * 300.00527 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3451 1.9994 -0.5138 5 6 2.2177 1.7714 1.4425 6 6 2.8394 3.1693 1.4426 7 6 4.1881 3.1276 0.7213 8 6 3.9807 2.6616 -0.7213 9 1 4.9415 2.6323 -1.2353 10 6 3.0606 3.6207 -1.4316 11 8 2.0899 3.2020 -2.0260 12 7 3.3164 4.9438 -1.4064 13 6 2.3650 5.8853 -2.0017 14 6 2.9124 7.3088 -1.8804 15 6 3.0444 7.8369 -0.4751 16 1 3.9786 7.7307 0.0562 17 6 1.9723 8.4555 0.1323 18 7 2.1116 8.9912 1.3253 19 14 0.3219 8.5330 -0.7392 20 1 0.2754 9.7387 -1.6047 21 1 -0.7669 8.6043 0.2680 22 1 0.1454 7.3174 -1.5738 23 6 3.9607 7.7521 -2.9029 24 6 2.5358 8.3065 -2.9775 25 6 3.3589 1.2637 -0.7213 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 2.8829 1.0775 1.9564 30 1 1.2567 1.8015 1.9564 31 1 2.9876 3.5010 2.4702 32 1 2.1739 3.8630 0.9288 33 1 4.8536 2.4339 1.2351 34 1 4.6309 4.1236 0.7209 35 1 4.1305 5.2726 -0.9939 36 1 1.4110 5.8172 -1.4790 37 1 2.2211 5.6399 -3.0539 38 1 1.3574 9.4261 1.7529 39 1 4.7457 8.4257 -2.5593 40 1 4.2600 7.0298 -3.6624 41 1 1.8984 7.9486 -3.7860 42 1 2.3834 9.3448 -2.6828 43 1 3.2108 0.9320 -1.7489 44 1 4.0245 0.5700 -0.2075 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352645850.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:50 Heat of formation + Delta-G solvation = -78.077538 kcal Electronic energy + Delta-G solvation = -23501.111509 eV Core-core repulsion = 20225.484514 eV Total energy + Delta-G solvation = -3275.626995 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.31772 -38.18114 -37.07915 -35.86088 -33.52926 -32.17355 -30.93293 -29.89834 -26.81949 -26.35065 -25.30635 -22.97383 -22.24269 -21.74459 -20.83002 -19.50581 -18.68702 -16.81873 -16.61073 -16.07377 -15.66250 -15.24480 -15.11476 -15.00163 -14.44096 -14.15982 -13.87603 -13.42461 -13.26414 -12.89315 -12.79186 -12.45282 -12.34202 -12.08946 -11.93944 -11.86083 -11.60181 -11.20586 -10.89920 -10.77787 -10.65206 -10.56366 -10.40061 -10.27181 -10.16194 -9.76722 -9.34963 -9.25704 -9.17179 -8.67076 -8.62449 -8.29311 -6.20527 -4.24713 3.06774 3.24669 3.34501 3.38819 3.71879 3.82101 4.35248 4.76787 4.80743 4.85654 5.00401 5.08415 5.21214 5.24280 5.33039 5.44679 5.47623 5.52047 5.57382 5.63782 5.67168 5.71937 5.74643 5.95031 5.98701 6.03541 6.07802 6.18795 6.20878 6.22092 6.28479 6.37970 6.39226 6.45242 6.53587 6.67602 6.96139 7.03489 7.11626 7.34027 7.63762 8.14508 8.36389 8.73858 8.79641 9.42954 10.90650 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.019291 B = 0.005322 C = 0.005070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.119311 B = 5259.660991 C = 5521.127513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.390 6.390 3 C 0.079 3.921 4 H 0.085 0.915 5 C -0.139 4.139 6 C -0.121 4.121 7 C -0.112 4.112 8 C -0.106 4.106 9 H 0.100 0.900 10 C 0.511 3.489 11 O -0.557 6.557 12 N -0.701 5.701 13 C 0.154 3.846 14 C -0.017 4.017 15 C -0.489 4.489 16 H 0.078 0.922 17 C 0.082 3.918 18 N -0.894 5.894 19 Si 0.875 3.125 20 H -0.276 1.276 21 H -0.294 1.294 22 H -0.258 1.258 23 C -0.177 4.177 24 C -0.193 4.193 25 C -0.090 4.090 26 H 0.042 0.958 27 H 0.080 0.920 28 H 0.038 0.962 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.404 0.596 36 H 0.063 0.937 37 H 0.044 0.956 38 H 0.265 0.735 39 H 0.088 0.912 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.090 0.910 43 H 0.074 0.926 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.330 -12.860 -2.085 13.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.309 6.309 3 C 0.021 3.979 4 H 0.103 0.897 5 C -0.177 4.177 6 C -0.159 4.159 7 C -0.150 4.150 8 C -0.128 4.128 9 H 0.118 0.882 10 C 0.297 3.703 11 O -0.437 6.437 12 N -0.350 5.350 13 C 0.030 3.970 14 C -0.018 4.018 15 C -0.526 4.526 16 H 0.096 0.904 17 C -0.121 4.121 18 N -0.530 5.530 19 Si 0.703 3.297 20 H -0.202 1.202 21 H -0.221 1.221 22 H -0.183 1.183 23 C -0.215 4.215 24 C -0.231 4.231 25 C -0.128 4.128 26 H 0.061 0.939 27 H 0.098 0.902 28 H 0.056 0.944 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.239 0.761 36 H 0.082 0.918 37 H 0.062 0.938 38 H 0.075 0.925 39 H 0.106 0.894 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.109 0.891 43 H 0.093 0.907 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.639 -13.187 -2.336 13.492 hybrid contribution -0.833 0.683 -0.128 1.084 sum 0.806 -12.504 -2.464 12.770 Atomic orbital electron populations 1.22724 0.81554 1.01989 1.00104 1.87807 1.19338 1.28615 1.95127 1.22399 0.95735 0.84611 0.95112 0.89676 1.22049 1.01091 0.97196 0.97358 1.21521 0.96655 0.96451 1.01283 1.21575 0.98053 1.02175 0.93187 1.21357 0.99440 0.94651 0.97332 0.88174 1.20503 0.86190 0.83231 0.80388 1.90608 1.30436 1.77928 1.44720 1.45902 1.25054 1.05387 1.58631 1.21183 0.92013 0.88078 0.95713 1.19629 0.99192 0.90478 0.92520 1.20154 0.99986 1.37542 0.94966 0.90387 1.24935 0.98646 0.93992 0.94547 1.69881 1.31731 1.36506 1.14907 0.86930 0.83673 0.79575 0.79487 1.20218 1.22053 1.18264 1.22824 0.92339 1.03629 1.02682 1.22961 0.98270 1.00025 1.01834 1.21280 0.95336 0.94735 1.01490 0.93924 0.90152 0.94378 0.91495 0.92204 0.91118 0.91203 0.90941 0.90542 0.76094 0.91841 0.93787 0.92475 0.89396 0.90930 0.90837 0.89116 0.90743 0.90912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.82 101.05 1.09 1.49 16 2 O -0.39 -5.72 10.35 -35.23 -0.36 -6.09 16 3 C 0.08 1.16 2.32 -26.73 -0.06 1.10 16 4 H 0.09 1.48 5.47 -51.93 -0.28 1.20 16 5 C -0.14 -1.86 5.54 -26.73 -0.15 -2.01 16 6 C -0.12 -1.71 5.70 -26.73 -0.15 -1.86 16 7 C -0.11 -1.38 5.28 -26.73 -0.14 -1.52 16 8 C -0.11 -1.39 3.04 -91.77 -0.28 -1.67 16 9 H 0.10 1.08 8.14 -51.92 -0.42 0.66 16 10 C 0.51 8.70 5.57 -10.98 -0.06 8.64 16 11 O -0.56 -11.22 14.03 5.56 0.08 -11.14 16 12 N -0.70 -12.42 5.28 -60.30 -0.32 -12.73 16 13 C 0.15 3.15 5.17 -4.05 -0.02 3.12 16 14 C -0.02 -0.36 0.85 -155.66 -0.13 -0.49 16 15 C -0.49 -12.41 9.22 -34.44 -0.32 -12.73 16 16 H 0.08 2.13 8.06 -52.49 -0.42 1.71 16 17 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 18 N -0.89 -25.75 13.96 55.43 0.77 -24.98 16 19 Si 0.88 20.99 25.02 -169.99 -4.25 16.73 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 22 H -0.26 -5.99 5.62 56.52 0.32 -5.67 16 23 C -0.18 -3.33 9.96 -26.69 -0.27 -3.60 16 24 C -0.19 -3.90 7.71 -26.69 -0.21 -4.10 16 25 C -0.09 -1.21 4.72 -26.73 -0.13 -1.34 16 26 H 0.04 0.53 8.09 -51.93 -0.42 0.11 16 27 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.04 0.43 7.87 -51.93 -0.41 0.02 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.06 0.79 7.87 -51.92 -0.41 0.38 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.07 1.18 7.22 -51.93 -0.37 0.81 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.08 0.95 7.23 -51.93 -0.38 0.58 16 35 H 0.40 6.66 7.44 -40.82 -0.30 6.35 16 36 H 0.06 1.45 6.33 -51.93 -0.33 1.12 16 37 H 0.04 0.88 8.09 -51.93 -0.42 0.46 16 38 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 39 H 0.09 1.65 8.14 -51.93 -0.42 1.23 16 40 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 42 H 0.09 1.93 7.43 -51.93 -0.39 1.54 16 43 H 0.07 1.06 8.00 -51.93 -0.42 0.65 16 44 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 340.52 15.07 5.13 5.13 Total: -1.00 -29.50 340.52 -7.44 -36.94 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: -7.57 Total: 9.00 kcal Atomic # 6 Polarization: -11.95 SS G_CDS: -0.92 Total: -12.86 kcal Atomic # 7 Polarization: -38.17 SS G_CDS: 0.46 Total: -37.72 kcal Atomic # 8 Polarization: -16.94 SS G_CDS: -0.29 Total: -17.23 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -4.25 Total: 16.73 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.50 -7.44 -36.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352645850.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.139 kcal (2) G-P(sol) polarization free energy of solvation -29.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds