Wall clock time and date at job start Tue Mar 31 2020 06:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42895 * 114.00068 * 2 1 4 4 H 1.09004 * 109.47352 * 30.00398 * 3 2 1 5 5 C 1.53002 * 109.47586 * 270.00514 * 3 2 1 6 6 C 1.53000 * 109.46908 * 300.00140 * 5 3 2 7 7 C 1.52998 * 109.47121 * 299.99703 * 6 5 3 8 8 C 1.53002 * 109.46987 * 60.00345 * 7 6 5 9 9 H 1.08999 * 109.47725 * 59.99774 * 8 7 6 10 10 C 1.50708 * 109.47222 * 180.02562 * 8 7 6 11 11 O 1.21277 * 119.99999 * 84.90523 * 10 8 7 12 12 N 1.34776 * 119.99671 * 264.90649 * 10 8 7 13 13 C 1.46503 * 119.99655 * 185.41418 * 12 10 8 14 14 C 1.52995 * 109.46945 * 184.68368 * 13 12 10 15 15 C 1.50704 * 115.55242 * 64.75795 * 14 13 12 16 16 H 1.07995 * 120.00286 * 264.78897 * 15 14 13 17 17 C 1.37876 * 119.99661 * 84.78894 * 15 14 13 18 18 N 1.31513 * 119.99664 * 180.81042 * 17 15 14 19 19 Si 1.86799 * 120.00192 * 0.81104 * 17 15 14 20 20 H 1.48495 * 109.47177 * 86.33096 * 19 17 15 21 21 H 1.48500 * 109.47099 * 206.32750 * 19 17 15 22 22 H 1.48498 * 109.46933 * 326.32728 * 19 17 15 23 23 C 1.53006 * 117.49938 * 279.09238 * 14 13 12 24 24 C 1.52999 * 117.49910 * 210.43434 * 14 13 12 25 25 C 1.52998 * 109.47018 * 150.00458 * 3 2 1 26 26 H 1.09006 * 109.46612 * 299.99437 * 1 2 3 27 27 H 1.09002 * 109.47096 * 59.99353 * 1 2 3 28 28 H 1.08996 * 109.47070 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46989 * 180.02562 * 5 3 2 30 30 H 1.08996 * 109.46992 * 59.99914 * 5 3 2 31 31 H 1.08996 * 109.47145 * 180.02562 * 6 5 3 32 32 H 1.09000 * 109.47394 * 59.99737 * 6 5 3 33 33 H 1.08998 * 109.47515 * 300.00350 * 7 6 5 34 34 H 1.09004 * 109.47108 * 179.97438 * 7 6 5 35 35 H 0.96999 * 120.00201 * 5.41220 * 12 10 8 36 36 H 1.09003 * 109.47288 * 304.68206 * 13 12 10 37 37 H 1.08991 * 109.46926 * 64.68423 * 13 12 10 38 38 H 0.97009 * 120.00001 * 180.02562 * 18 17 15 39 39 H 1.08996 * 117.49429 * 359.97438 * 23 14 13 40 40 H 1.08995 * 117.49953 * 145.02073 * 23 14 13 41 41 H 1.09003 * 117.49911 * 214.98048 * 24 14 13 42 42 H 1.08999 * 117.50071 * 359.97438 * 24 14 13 43 43 H 1.09009 * 109.46886 * 300.00167 * 25 3 2 44 44 H 1.09000 * 109.47014 * 180.02562 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9994 0.5139 5 6 2.2176 1.7715 -1.4425 6 6 3.1514 0.7975 -2.1638 7 6 4.5001 0.7552 -1.4427 8 6 4.2927 0.2891 -0.0002 9 1 3.8493 -0.7066 -0.0002 10 6 5.6211 0.2481 0.7104 11 8 6.0672 1.2538 1.2206 12 7 6.3133 -0.9063 0.7788 13 6 7.5449 -0.9761 1.5690 14 6 8.1910 -2.3509 1.3861 15 6 8.6747 -2.6616 -0.0070 16 1 8.0427 -3.2125 -0.6878 17 6 9.9241 -2.2425 -0.4123 18 7 10.3399 -2.4997 -1.6332 19 14 11.0262 -1.3093 0.7725 20 1 11.8030 -2.2748 1.5907 21 1 11.9603 -0.4470 0.0049 22 1 10.1915 -0.4642 1.6637 23 6 7.6330 -3.5096 2.2149 24 6 9.0004 -2.9125 2.5566 25 6 3.3590 1.2631 0.7211 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 2.6614 2.7670 -1.4424 30 1 1.2568 1.8016 -1.9562 31 1 3.2995 1.1297 -3.1913 32 1 2.7080 -0.1983 -2.1639 33 1 4.9434 1.7509 -1.4426 34 1 5.1651 0.0609 -1.9564 35 1 5.9960 -1.6909 0.3048 36 1 8.2359 -0.2025 1.2341 37 1 7.3100 -0.8223 2.6222 38 1 11.2191 -2.2052 -1.9183 39 1 6.8060 -3.2924 2.8908 40 1 7.6162 -4.4966 1.7528 41 1 9.8827 -3.5069 2.3192 42 1 9.0730 -2.3024 3.4570 43 1 3.2112 0.9311 1.7489 44 1 3.8021 2.2590 0.7215 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352645852.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:52 Heat of formation + Delta-G solvation = -80.101125 kcal Electronic energy + Delta-G solvation = -22907.223072 eV Core-core repulsion = 19631.508328 eV Total energy + Delta-G solvation = -3275.714744 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.02198 -38.57641 -37.05742 -35.72660 -33.34511 -32.11500 -31.00517 -30.24115 -26.79801 -26.63605 -25.27333 -23.05099 -22.54628 -21.70329 -20.04026 -19.53111 -19.00308 -17.08439 -16.34806 -16.18346 -15.73692 -15.29600 -15.10367 -14.96054 -14.51288 -14.36732 -13.80481 -13.55264 -13.19003 -12.80866 -12.69462 -12.53736 -12.42101 -12.29097 -12.03601 -11.81344 -11.42028 -11.27082 -11.14025 -10.86244 -10.72257 -10.49939 -10.41386 -10.22498 -10.17157 -9.70199 -9.61877 -9.19366 -9.13714 -8.64522 -8.53170 -8.21638 -6.14110 -4.18428 3.18274 3.30497 3.40123 3.45225 3.66117 3.79464 4.41740 4.63647 4.68592 4.80570 4.95745 5.06904 5.13067 5.15119 5.16747 5.23231 5.34133 5.42716 5.45976 5.47703 5.57030 5.70141 5.75465 5.85038 5.96728 6.03134 6.05020 6.08779 6.15858 6.20825 6.26006 6.30750 6.43330 6.45484 6.56275 6.72374 7.02467 7.08645 7.09526 7.20819 7.69502 8.25048 8.42945 8.85331 8.86252 9.49221 10.97254 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.023996 B = 0.004265 C = 0.004083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.573681 B = 6564.126280 C = 6855.347620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.378 6.378 3 C 0.090 3.910 4 H 0.060 0.940 5 C -0.141 4.141 6 C -0.110 4.110 7 C -0.109 4.109 8 C -0.097 4.097 9 H 0.095 0.905 10 C 0.510 3.490 11 O -0.561 6.561 12 N -0.701 5.701 13 C 0.154 3.846 14 C -0.016 4.016 15 C -0.489 4.489 16 H 0.078 0.922 17 C 0.081 3.919 18 N -0.896 5.896 19 Si 0.878 3.122 20 H -0.277 1.277 21 H -0.294 1.294 22 H -0.258 1.258 23 C -0.178 4.178 24 C -0.194 4.194 25 C -0.096 4.096 26 H 0.038 0.962 27 H 0.038 0.962 28 H 0.083 0.917 29 H 0.072 0.928 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.404 0.596 36 H 0.066 0.934 37 H 0.040 0.960 38 H 0.265 0.735 39 H 0.073 0.927 40 H 0.087 0.913 41 H 0.090 0.910 42 H 0.073 0.927 43 H 0.068 0.932 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.917 5.848 2.334 18.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.297 6.297 3 C 0.032 3.968 4 H 0.079 0.921 5 C -0.179 4.179 6 C -0.148 4.148 7 C -0.147 4.147 8 C -0.119 4.119 9 H 0.113 0.887 10 C 0.296 3.704 11 O -0.440 6.440 12 N -0.349 5.349 13 C 0.030 3.970 14 C -0.017 4.017 15 C -0.526 4.526 16 H 0.096 0.904 17 C -0.122 4.122 18 N -0.532 5.532 19 Si 0.706 3.294 20 H -0.203 1.203 21 H -0.221 1.221 22 H -0.182 1.182 23 C -0.215 4.215 24 C -0.232 4.232 25 C -0.134 4.134 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.102 0.898 29 H 0.090 0.910 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.238 0.762 36 H 0.085 0.915 37 H 0.058 0.942 38 H 0.075 0.925 39 H 0.091 0.909 40 H 0.106 0.894 41 H 0.109 0.891 42 H 0.092 0.908 43 H 0.087 0.913 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -17.312 6.400 2.581 18.637 hybrid contribution 0.444 0.271 0.325 0.613 sum -16.868 6.671 2.906 18.371 Atomic orbital electron populations 1.22758 0.81716 1.02552 0.99583 1.87957 1.18995 1.27763 1.94989 1.22160 0.94616 0.84538 0.95473 0.92149 1.22038 0.99987 0.99819 0.96055 1.21400 0.94867 1.00198 0.98318 1.21470 0.97617 1.02323 0.93253 1.21161 0.93017 1.01810 0.95888 0.88680 1.20600 0.86365 0.83270 0.80151 1.90627 1.70724 1.33974 1.48710 1.45907 1.25473 1.12879 1.50688 1.21157 0.85042 0.98432 0.92365 1.19636 0.99172 0.89712 0.93201 1.20177 1.01443 1.36638 0.94321 0.90395 1.24948 0.97660 0.94769 0.94859 1.69885 1.19759 1.46231 1.17359 0.86885 0.80710 0.80418 0.81384 1.20273 1.22077 1.18231 1.22828 0.95448 0.99267 1.03988 1.22968 0.95502 1.05190 0.99568 1.21483 0.92531 1.00677 0.98734 0.94336 0.94325 0.89811 0.90965 0.92067 0.91914 0.91031 0.91420 0.90854 0.76173 0.91546 0.94160 0.92501 0.90885 0.89405 0.89146 0.90829 0.91281 0.89510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.82 101.05 1.09 1.34 16 2 O -0.38 -4.21 9.00 -35.23 -0.32 -4.53 16 3 C 0.09 0.94 2.92 -26.73 -0.08 0.86 16 4 H 0.06 0.54 7.79 -51.93 -0.40 0.13 16 5 C -0.14 -1.37 5.63 -26.73 -0.15 -1.52 16 6 C -0.11 -1.21 5.78 -26.73 -0.15 -1.36 16 7 C -0.11 -1.46 5.19 -26.73 -0.14 -1.60 16 8 C -0.10 -1.39 2.37 -91.77 -0.22 -1.61 16 9 H 0.09 1.31 7.68 -51.93 -0.40 0.91 16 10 C 0.51 9.46 6.82 -10.98 -0.07 9.38 16 11 O -0.56 -12.23 16.26 5.56 0.09 -12.14 16 12 N -0.70 -13.49 5.45 -60.30 -0.33 -13.82 16 13 C 0.15 3.32 5.18 -4.04 -0.02 3.30 16 14 C -0.02 -0.36 0.83 -155.66 -0.13 -0.49 16 15 C -0.49 -12.96 9.28 -34.44 -0.32 -13.28 16 16 H 0.08 2.23 8.06 -52.49 -0.42 1.80 16 17 C 0.08 2.26 5.47 -17.82 -0.10 2.16 16 18 N -0.90 -26.69 13.96 55.43 0.77 -25.91 16 19 Si 0.88 21.72 24.89 -169.99 -4.23 17.49 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 22 H -0.26 -6.20 5.77 56.52 0.33 -5.87 16 23 C -0.18 -3.44 9.96 -26.69 -0.27 -3.71 16 24 C -0.19 -4.03 7.67 -26.69 -0.20 -4.24 16 25 C -0.10 -1.23 4.60 -26.73 -0.12 -1.35 16 26 H 0.04 0.27 8.09 -51.93 -0.42 -0.15 16 27 H 0.04 0.27 7.87 -51.93 -0.41 -0.14 16 28 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.52 7.87 -51.93 -0.41 0.11 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.81 7.68 -51.93 -0.40 0.41 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.40 7.23 8.44 -40.82 -0.34 6.89 16 36 H 0.07 1.62 6.45 -51.93 -0.33 1.28 16 37 H 0.04 0.83 8.09 -51.93 -0.42 0.41 16 38 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 39 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.09 1.70 8.14 -51.93 -0.42 1.27 16 41 H 0.09 1.96 7.36 -51.93 -0.38 1.58 16 42 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 43 H 0.07 0.90 8.14 -51.92 -0.42 0.48 16 44 H 0.09 1.15 7.86 -51.93 -0.41 0.74 16 LS Contribution 346.85 15.07 5.23 5.23 Total: -1.00 -31.00 346.85 -7.43 -38.43 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -7.77 Total: 7.36 kcal Atomic # 6 Polarization: -11.23 SS G_CDS: -0.88 Total: -12.11 kcal Atomic # 7 Polarization: -40.17 SS G_CDS: 0.44 Total: -39.73 kcal Atomic # 8 Polarization: -16.45 SS G_CDS: -0.23 Total: -16.68 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.23 Total: 17.49 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.00 -7.43 -38.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352645852.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.667 kcal (2) G-P(sol) polarization free energy of solvation -31.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds