Wall clock time and date at job start Tue Mar 31 2020 06:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42895 * 114.00068 * 2 1 4 4 H 1.09004 * 109.47352 * 30.00398 * 3 2 1 5 5 C 1.53002 * 109.47586 * 270.00514 * 3 2 1 6 6 C 1.53000 * 109.46908 * 300.00140 * 5 3 2 7 7 C 1.52998 * 109.47121 * 299.99703 * 6 5 3 8 8 C 1.53002 * 109.46987 * 60.00345 * 7 6 5 9 9 H 1.08999 * 109.47725 * 59.99774 * 8 7 6 10 10 C 1.50708 * 109.47222 * 180.02562 * 8 7 6 11 11 O 1.21277 * 119.99999 * 84.90523 * 10 8 7 12 12 N 1.34776 * 119.99671 * 264.90649 * 10 8 7 13 13 C 1.46503 * 119.99655 * 185.41418 * 12 10 8 14 14 C 1.52995 * 109.46945 * 184.68368 * 13 12 10 15 15 C 1.50704 * 115.55242 * 64.75795 * 14 13 12 16 16 H 1.07995 * 120.00286 * 264.78897 * 15 14 13 17 17 C 1.37876 * 119.99661 * 84.78894 * 15 14 13 18 18 N 1.31513 * 119.99664 * 180.81042 * 17 15 14 19 19 Si 1.86799 * 120.00192 * 0.81104 * 17 15 14 20 20 H 1.48495 * 109.47177 * 86.33096 * 19 17 15 21 21 H 1.48500 * 109.47099 * 206.32750 * 19 17 15 22 22 H 1.48498 * 109.46933 * 326.32728 * 19 17 15 23 23 C 1.53006 * 117.49938 * 279.09238 * 14 13 12 24 24 C 1.52999 * 117.49910 * 210.43434 * 14 13 12 25 25 C 1.52998 * 109.47018 * 150.00458 * 3 2 1 26 26 H 1.09006 * 109.46612 * 299.99437 * 1 2 3 27 27 H 1.09002 * 109.47096 * 59.99353 * 1 2 3 28 28 H 1.08996 * 109.47070 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46989 * 180.02562 * 5 3 2 30 30 H 1.08996 * 109.46992 * 59.99914 * 5 3 2 31 31 H 1.08996 * 109.47145 * 180.02562 * 6 5 3 32 32 H 1.09000 * 109.47394 * 59.99737 * 6 5 3 33 33 H 1.08998 * 109.47515 * 300.00350 * 7 6 5 34 34 H 1.09004 * 109.47108 * 179.97438 * 7 6 5 35 35 H 0.96999 * 120.00201 * 5.41220 * 12 10 8 36 36 H 1.09003 * 109.47288 * 304.68206 * 13 12 10 37 37 H 1.08991 * 109.46926 * 64.68423 * 13 12 10 38 38 H 0.97009 * 120.00001 * 180.02562 * 18 17 15 39 39 H 1.08996 * 117.49429 * 359.97438 * 23 14 13 40 40 H 1.08995 * 117.49953 * 145.02073 * 23 14 13 41 41 H 1.09003 * 117.49911 * 214.98048 * 24 14 13 42 42 H 1.08999 * 117.50071 * 359.97438 * 24 14 13 43 43 H 1.09009 * 109.46886 * 300.00167 * 25 3 2 44 44 H 1.09000 * 109.47014 * 180.02562 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9994 0.5139 5 6 2.2176 1.7715 -1.4425 6 6 3.1514 0.7975 -2.1638 7 6 4.5001 0.7552 -1.4427 8 6 4.2927 0.2891 -0.0002 9 1 3.8493 -0.7066 -0.0002 10 6 5.6211 0.2481 0.7104 11 8 6.0672 1.2538 1.2206 12 7 6.3133 -0.9063 0.7788 13 6 7.5449 -0.9761 1.5690 14 6 8.1910 -2.3509 1.3861 15 6 8.6747 -2.6616 -0.0070 16 1 8.0427 -3.2125 -0.6878 17 6 9.9241 -2.2425 -0.4123 18 7 10.3399 -2.4997 -1.6332 19 14 11.0262 -1.3093 0.7725 20 1 11.8030 -2.2748 1.5907 21 1 11.9603 -0.4470 0.0049 22 1 10.1915 -0.4642 1.6637 23 6 7.6330 -3.5096 2.2149 24 6 9.0004 -2.9125 2.5566 25 6 3.3590 1.2631 0.7211 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 2.6614 2.7670 -1.4424 30 1 1.2568 1.8016 -1.9562 31 1 3.2995 1.1297 -3.1913 32 1 2.7080 -0.1983 -2.1639 33 1 4.9434 1.7509 -1.4426 34 1 5.1651 0.0609 -1.9564 35 1 5.9960 -1.6909 0.3048 36 1 8.2359 -0.2025 1.2341 37 1 7.3100 -0.8223 2.6222 38 1 11.2191 -2.2052 -1.9183 39 1 6.8060 -3.2924 2.8908 40 1 7.6162 -4.4966 1.7528 41 1 9.8827 -3.5069 2.3192 42 1 9.0730 -2.3024 3.4570 43 1 3.2112 0.9311 1.7489 44 1 3.8021 2.2590 0.7215 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352645852.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:52 Heat of formation + Delta-G solvation = -100.605534 kcal Electronic energy + Delta-G solvation = -22908.112210 eV Core-core repulsion = 19631.508328 eV Total energy + Delta-G solvation = -3276.603882 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.26444 -39.75511 -38.68795 -36.70672 -34.97684 -34.22380 -32.03567 -31.17564 -28.50226 -27.30631 -27.16484 -24.24414 -23.48431 -23.32088 -21.34717 -21.02446 -20.41517 -18.64282 -17.99885 -17.24776 -16.92490 -16.67247 -16.39944 -16.13766 -15.90355 -15.53912 -15.30847 -14.85564 -14.68458 -14.45467 -14.14386 -13.83585 -13.56948 -13.47693 -13.17069 -13.10050 -12.84200 -12.61641 -12.29171 -12.20192 -12.17723 -12.01115 -11.79346 -11.60064 -11.39551 -11.18343 -11.01303 -10.77681 -10.64691 -10.37613 -10.25323 -9.86818 -8.30904 -6.36841 1.32350 1.37801 1.47337 1.69699 2.32010 2.35523 2.93543 3.04384 3.23891 3.68443 3.75972 3.84289 4.02361 4.13406 4.24071 4.27762 4.35346 4.41430 4.43166 4.45503 4.50770 4.57811 4.63895 4.67212 4.69922 4.83836 4.86407 4.89823 4.98599 5.05280 5.08753 5.15736 5.17859 5.26525 5.29454 5.30929 5.47546 5.48868 5.60908 5.69056 6.27657 6.38257 6.68882 6.74785 7.32693 7.34807 8.83830 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.023996 B = 0.004265 C = 0.004083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.573681 B = 6564.126280 C = 6855.347620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.400 6.400 3 C 0.094 3.906 4 H 0.081 0.919 5 C -0.139 4.139 6 C -0.104 4.104 7 C -0.108 4.108 8 C -0.087 4.087 9 H 0.103 0.897 10 C 0.507 3.493 11 O -0.595 6.595 12 N -0.702 5.702 13 C 0.162 3.838 14 C -0.042 4.042 15 C -0.477 4.477 16 H 0.044 0.956 17 C 0.027 3.973 18 N -0.944 5.944 19 Si 0.928 3.072 20 H -0.262 1.262 21 H -0.303 1.303 22 H -0.246 1.246 23 C -0.150 4.150 24 C -0.192 4.192 25 C -0.095 4.095 26 H 0.048 0.952 27 H 0.051 0.949 28 H 0.090 0.910 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.058 0.942 34 H 0.056 0.944 35 H 0.409 0.591 36 H 0.034 0.966 37 H 0.056 0.944 38 H 0.264 0.736 39 H 0.104 0.896 40 H 0.086 0.914 41 H 0.079 0.921 42 H 0.098 0.902 43 H 0.064 0.936 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.983 6.233 3.780 21.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.319 6.319 3 C 0.037 3.963 4 H 0.099 0.901 5 C -0.176 4.176 6 C -0.142 4.142 7 C -0.146 4.146 8 C -0.109 4.109 9 H 0.121 0.879 10 C 0.295 3.705 11 O -0.477 6.477 12 N -0.351 5.351 13 C 0.038 3.962 14 C -0.043 4.043 15 C -0.515 4.515 16 H 0.063 0.937 17 C -0.171 4.171 18 N -0.584 5.584 19 Si 0.754 3.246 20 H -0.187 1.187 21 H -0.230 1.230 22 H -0.170 1.170 23 C -0.187 4.187 24 C -0.230 4.230 25 C -0.132 4.132 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.109 0.891 29 H 0.095 0.905 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.245 0.755 36 H 0.052 0.948 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.122 0.878 40 H 0.105 0.895 41 H 0.097 0.903 42 H 0.116 0.884 43 H 0.082 0.918 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -19.409 6.764 4.041 20.947 hybrid contribution 1.016 0.094 -0.151 1.031 sum -18.393 6.858 3.890 20.012 Atomic orbital electron populations 1.22936 0.80065 1.03468 1.00670 1.87920 1.20845 1.28032 1.95141 1.22112 0.93473 0.84986 0.95778 0.90095 1.22042 1.00575 0.99475 0.95530 1.21359 0.93374 1.00732 0.98725 1.21468 0.99102 1.01183 0.92831 1.21161 0.90790 1.02941 0.95984 0.87914 1.21372 0.87384 0.82298 0.79448 1.90602 1.71848 1.35015 1.50202 1.45951 1.24927 1.13549 1.50667 1.20909 0.85243 0.96730 0.93352 1.19464 1.01829 0.91389 0.91637 1.20345 1.00472 1.34643 0.95994 0.93740 1.25677 0.99356 0.95979 0.96066 1.70015 1.20350 1.48614 1.19379 0.86071 0.79159 0.79582 0.79821 1.18671 1.22995 1.17016 1.22867 0.95697 0.97729 1.02451 1.23030 0.95757 1.04998 0.99221 1.21472 0.93608 0.99517 0.98653 0.93362 0.93083 0.89105 0.90457 0.90054 0.90808 0.91206 0.92368 0.92494 0.75529 0.94759 0.92567 0.92690 0.87817 0.89514 0.90267 0.88372 0.91772 0.90308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 10.82 113.37 1.23 1.55 16 2 O -0.40 -7.93 9.00 -148.98 -1.34 -9.27 16 3 C 0.09 1.73 2.92 30.59 0.09 1.82 16 4 H 0.08 1.18 7.79 -2.39 -0.02 1.16 16 5 C -0.14 -2.31 5.63 30.59 0.17 -2.14 16 6 C -0.10 -2.11 5.78 30.59 0.18 -1.93 16 7 C -0.11 -2.87 5.19 30.59 0.16 -2.71 16 8 C -0.09 -2.46 2.37 -11.54 -0.03 -2.48 16 9 H 0.10 2.73 7.68 -2.39 -0.02 2.71 16 10 C 0.51 18.76 6.82 87.66 0.60 19.36 16 11 O -0.59 -26.09 16.26 -3.02 -0.05 -26.14 16 12 N -0.70 -26.85 5.45 -463.07 -2.52 -29.38 16 13 C 0.16 6.87 5.18 86.38 0.45 7.31 16 14 C -0.04 -1.83 0.83 -52.93 -0.04 -1.87 16 15 C -0.48 -25.69 9.28 25.60 0.24 -25.46 16 16 H 0.04 2.63 8.06 -2.91 -0.02 2.61 16 17 C 0.03 1.56 5.47 84.65 0.46 2.02 16 18 N -0.94 -58.07 13.96 21.45 0.30 -57.77 16 19 Si 0.93 44.97 24.89 68.60 1.71 46.68 16 20 H -0.26 -11.95 7.11 99.48 0.71 -11.25 16 21 H -0.30 -14.98 7.11 99.48 0.71 -14.28 16 22 H -0.25 -11.40 5.77 99.48 0.57 -10.83 16 23 C -0.15 -5.41 9.96 30.62 0.30 -5.10 16 24 C -0.19 -7.47 7.67 30.62 0.23 -7.24 16 25 C -0.09 -2.29 4.60 30.59 0.14 -2.15 16 26 H 0.05 0.53 8.09 -2.38 -0.02 0.51 16 27 H 0.05 0.54 7.87 -2.39 -0.02 0.52 16 28 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.08 1.08 7.87 -2.39 -0.02 1.06 16 31 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.07 1.46 7.68 -2.39 -0.02 1.44 16 33 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.41 14.62 8.44 -92.71 -0.78 13.83 16 36 H 0.03 1.66 6.45 -2.39 -0.02 1.65 16 37 H 0.06 2.20 8.09 -2.39 -0.02 2.18 16 38 H 0.26 15.45 8.31 -92.70 -0.77 14.68 16 39 H 0.10 3.14 8.14 -2.39 -0.02 3.12 16 40 H 0.09 3.15 8.14 -2.39 -0.02 3.13 16 41 H 0.08 3.27 7.36 -2.39 -0.02 3.25 16 42 H 0.10 3.35 8.14 -2.39 -0.02 3.33 16 43 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 44 H 0.08 2.03 7.86 -2.39 -0.02 2.01 16 Total: -1.00 -67.95 346.85 2.32 -65.62 By element: Atomic # 1 Polarization: 29.21 SS G_CDS: 0.05 Total: 29.27 kcal Atomic # 6 Polarization: -23.20 SS G_CDS: 4.18 Total: -19.02 kcal Atomic # 7 Polarization: -84.92 SS G_CDS: -2.22 Total: -87.14 kcal Atomic # 8 Polarization: -34.02 SS G_CDS: -1.39 Total: -35.40 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 1.71 Total: 46.68 kcal Total: -67.95 2.32 -65.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352645852.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.983 kcal (2) G-P(sol) polarization free energy of solvation -67.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds