Wall clock time and date at job start Tue Mar 31 2020 05:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42905 * 109.46997 * 2 1 4 4 C 1.42893 * 114.00138 * 179.97438 * 3 2 1 5 5 C 1.53776 * 113.61615 * 149.99831 * 4 3 2 6 6 C 1.53782 * 87.08199 * 89.20291 * 5 4 3 7 7 C 1.50698 * 113.61817 * 139.97921 * 6 5 4 8 8 O 1.21285 * 119.99686 * 1.53696 * 7 6 5 9 9 N 1.34775 * 120.00318 * 181.52944 * 7 6 5 10 10 C 1.46499 * 120.00337 * 180.02562 * 9 7 6 11 11 C 1.50701 * 109.46992 * 269.99986 * 10 9 7 12 12 H 1.07998 * 120.00129 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99861 * 179.97438 * 11 10 9 14 14 N 1.31510 * 119.99913 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99734 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47432 * 0.02562 * 15 13 11 17 17 H 1.48506 * 109.46890 * 120.00210 * 15 13 11 18 18 H 1.48501 * 109.47062 * 240.00257 * 15 13 11 19 19 C 1.46502 * 120.00005 * 0.02562 * 9 7 6 20 20 C 1.52998 * 109.47482 * 270.00252 * 19 9 7 21 21 C 1.52995 * 117.49809 * 243.62544 * 20 19 9 22 22 C 1.52998 * 117.50248 * 174.99612 * 20 19 9 23 23 C 1.53779 * 87.17260 * 25.39126 * 6 5 4 24 24 H 1.08998 * 109.47462 * 300.00046 * 1 2 3 25 25 H 1.09003 * 109.47018 * 60.00575 * 1 2 3 26 26 H 1.09003 * 109.47177 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47462 * 239.99954 * 2 1 3 28 28 H 1.09003 * 109.47018 * 119.99424 * 2 1 3 29 29 H 1.09005 * 112.84929 * 18.80189 * 4 3 2 30 30 H 1.09002 * 113.61493 * 334.65874 * 5 4 3 31 31 H 1.08993 * 113.61794 * 203.74734 * 5 4 3 32 32 H 1.09008 * 113.61598 * 270.80490 * 6 5 4 33 33 H 1.09002 * 109.47391 * 149.99977 * 10 9 7 34 34 H 1.09001 * 109.46813 * 30.00033 * 10 9 7 35 35 H 0.97002 * 119.99768 * 179.97438 * 14 13 11 36 36 H 1.08998 * 109.46888 * 29.99915 * 19 9 7 37 37 H 1.08994 * 109.47490 * 149.99977 * 19 9 7 38 38 H 1.09008 * 115.54896 * 29.32623 * 20 19 9 39 39 H 1.09003 * 117.49829 * 359.97438 * 21 20 19 40 40 H 1.08998 * 117.50281 * 145.02177 * 21 20 19 41 41 H 1.08997 * 117.50012 * 214.97612 * 22 20 19 42 42 H 1.09000 * 117.49751 * 0.02562 * 22 20 19 43 43 H 1.08999 * 113.61525 * 89.15949 * 23 6 5 44 44 H 1.09001 * 113.61769 * 220.06612 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.9488 2.7252 -0.7039 6 6 3.8411 3.4323 0.6574 7 6 4.9864 4.3690 0.9435 8 8 5.8622 4.5255 0.1192 9 7 5.0374 5.0330 2.1152 10 6 6.1505 5.9441 2.3931 11 6 7.2659 5.1845 3.0639 12 1 7.1568 4.1286 3.2629 13 6 8.4262 5.8373 3.4226 14 7 8.5593 7.1229 3.1798 15 14 9.8090 4.8956 4.2534 16 1 9.4136 3.4729 4.4120 17 1 11.0350 4.9781 3.4194 18 1 10.0780 5.4868 5.5888 19 6 3.9797 4.8437 3.1111 20 6 2.8666 5.8661 2.8735 21 6 2.6059 6.8955 3.9750 22 6 1.6106 5.7573 3.7404 23 6 4.0025 2.0465 1.3043 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.9280 0.5457 -0.3228 30 1 3.2638 3.1180 -1.4553 31 1 4.9718 2.6339 -1.0687 32 1 2.8670 3.8873 0.8373 33 1 5.8097 6.7445 3.0499 34 1 6.5127 6.3710 1.4578 35 1 9.3754 7.5823 3.4325 36 1 3.5729 3.8365 3.0220 37 1 4.3926 4.9818 4.1103 38 1 2.7387 6.1904 1.8407 39 1 3.2273 6.8441 4.8691 40 1 2.3065 7.8973 3.6671 41 1 0.6565 6.0104 3.2782 42 1 1.5775 4.9576 4.4804 43 1 5.0402 1.7693 1.4896 44 1 3.3608 1.8921 2.1718 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354507949.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:51 Heat of formation + Delta-G solvation = -40.865326 kcal Electronic energy + Delta-G solvation = -22787.539217 eV Core-core repulsion = 19513.525864 eV Total energy + Delta-G solvation = -3274.013352 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.11285 -38.34590 -37.09371 -35.71615 -34.28624 -32.47912 -31.04917 -28.16159 -26.40688 -25.58164 -25.21609 -22.99782 -22.56977 -22.12569 -20.73127 -19.72628 -18.40392 -16.96275 -16.43896 -16.04978 -15.87053 -15.64383 -15.09360 -14.73542 -14.49493 -14.23023 -13.67722 -13.25130 -13.12988 -12.83077 -12.54879 -12.37163 -12.12999 -12.03284 -11.63687 -11.45410 -11.40206 -11.30615 -11.22786 -11.17567 -10.84930 -10.63412 -10.50218 -10.25180 -10.20656 -10.07776 -9.64716 -9.55726 -9.49408 -8.70334 -8.40437 -7.59442 -6.00954 -4.05315 3.30759 3.37938 3.41129 3.46668 3.49888 3.89521 4.14473 4.47357 4.61555 4.72266 4.88085 4.90087 4.99779 5.04301 5.10188 5.15876 5.19294 5.24889 5.32076 5.33255 5.55394 5.60559 5.70224 5.73636 5.79759 5.84161 5.89998 5.93115 5.99109 6.09161 6.11623 6.13505 6.25167 6.32128 6.42590 6.53671 7.16309 7.21588 7.51174 7.62727 7.96346 8.28463 8.51896 8.95000 9.18496 9.59692 11.07094 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.015631 B = 0.004820 C = 0.004094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.919797 B = 5807.941189 C = 6837.725591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.366 6.366 4 C 0.063 3.937 5 C -0.116 4.116 6 C -0.128 4.128 7 C 0.514 3.486 8 O -0.543 6.543 9 N -0.592 5.592 10 C 0.246 3.754 11 C -0.523 4.523 12 H 0.057 0.943 13 C 0.060 3.940 14 N -0.894 5.894 15 Si 0.896 3.104 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.284 1.284 19 C 0.143 3.857 20 C -0.165 4.165 21 C -0.175 4.175 22 C -0.181 4.181 23 C -0.140 4.140 24 H 0.063 0.937 25 H 0.062 0.938 26 H 0.068 0.932 27 H 0.047 0.953 28 H 0.048 0.952 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.105 0.895 32 H 0.109 0.891 33 H 0.032 0.968 34 H 0.041 0.959 35 H 0.262 0.738 36 H 0.072 0.928 37 H 0.081 0.919 38 H 0.102 0.898 39 H 0.096 0.904 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.092 0.908 43 H 0.094 0.906 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.588 -10.949 -2.155 19.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.285 6.285 4 C 0.005 3.995 5 C -0.154 4.154 6 C -0.149 4.149 7 C 0.300 3.700 8 O -0.421 6.421 9 N -0.322 5.322 10 C 0.127 3.873 11 C -0.562 4.562 12 H 0.075 0.925 13 C -0.141 4.141 14 N -0.534 5.534 15 Si 0.724 3.276 16 H -0.199 1.199 17 H -0.209 1.209 18 H -0.210 1.210 19 C 0.018 3.982 20 C -0.185 4.185 21 C -0.212 4.212 22 C -0.218 4.218 23 C -0.178 4.178 24 H 0.082 0.918 25 H 0.081 0.919 26 H 0.087 0.913 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.124 0.876 32 H 0.127 0.873 33 H 0.050 0.950 34 H 0.059 0.941 35 H 0.072 0.928 36 H 0.090 0.910 37 H 0.099 0.901 38 H 0.120 0.880 39 H 0.115 0.885 40 H 0.108 0.892 41 H 0.108 0.892 42 H 0.111 0.889 43 H 0.113 0.887 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -16.091 -10.534 -2.557 19.402 hybrid contribution 0.923 -0.508 0.643 1.235 sum -15.168 -11.042 -1.914 18.859 Atomic orbital electron populations 1.21743 0.93878 1.02061 1.03160 1.22510 0.95422 0.84109 1.00007 1.87889 1.20040 1.26015 1.94596 1.23102 0.81135 0.98219 0.97051 1.23080 1.02458 0.93812 0.96044 1.22678 0.99010 0.94902 0.98308 1.20241 0.86650 0.81033 0.82045 1.90644 1.40100 1.64824 1.46545 1.48160 1.24330 1.44490 1.15244 1.19259 0.82639 0.88044 0.97367 1.21483 1.00356 0.95825 1.38564 0.92503 1.24933 0.98258 0.94911 0.96043 1.69948 1.27346 1.08524 1.47542 0.86473 0.82163 0.79983 0.78968 1.19855 1.20918 1.21007 1.21022 0.86706 0.96763 0.93666 1.22896 0.97176 1.01615 0.96792 1.22999 1.02855 0.94558 1.00819 1.22908 0.93805 1.01644 1.03475 1.23396 1.02079 0.94682 0.97624 0.91800 0.91903 0.91287 0.93462 0.93389 0.90754 0.90593 0.87632 0.87259 0.94986 0.94057 0.92848 0.90983 0.90067 0.88027 0.88508 0.89218 0.89205 0.88919 0.88749 0.90423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 10.28 37.16 0.38 -0.77 16 2 C 0.06 0.52 6.50 37.16 0.24 0.76 16 3 O -0.37 -4.49 10.27 -35.23 -0.36 -4.85 16 4 C 0.06 0.78 4.38 -25.83 -0.11 0.67 16 5 C -0.12 -1.69 7.23 -25.92 -0.19 -1.87 16 6 C -0.13 -2.03 2.74 -90.96 -0.25 -2.28 16 7 C 0.51 10.91 7.20 -10.99 -0.08 10.83 16 8 O -0.54 -13.89 15.49 5.55 0.09 -13.80 16 9 N -0.59 -12.75 2.46 -175.06 -0.43 -13.18 16 10 C 0.25 6.54 5.16 -5.19 -0.03 6.51 16 11 C -0.52 -14.96 9.39 -34.44 -0.32 -15.28 16 12 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 13 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 14 N -0.89 -26.85 13.29 55.43 0.74 -26.11 16 15 Si 0.90 22.01 29.54 -169.99 -5.02 16.98 16 16 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 17 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 18 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 19 C 0.14 2.42 5.40 -4.04 -0.02 2.40 16 20 C -0.17 -2.45 5.78 -90.62 -0.52 -2.98 16 21 C -0.18 -2.40 10.18 -26.73 -0.27 -2.67 16 22 C -0.18 -2.14 10.25 -26.73 -0.27 -2.42 16 23 C -0.14 -1.93 6.68 -25.83 -0.17 -2.10 16 24 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.80 7.87 -51.93 -0.41 0.39 16 30 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.11 1.67 7.45 -51.93 -0.39 1.28 16 32 H 0.11 1.63 7.69 -51.92 -0.40 1.23 16 33 H 0.03 0.87 8.07 -51.93 -0.42 0.45 16 34 H 0.04 1.25 7.42 -51.93 -0.39 0.86 16 35 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 36 H 0.07 1.07 5.66 -51.93 -0.29 0.77 16 37 H 0.08 1.44 7.80 -51.93 -0.41 1.03 16 38 H 0.10 1.59 8.14 -51.92 -0.42 1.17 16 39 H 0.10 1.36 8.03 -51.93 -0.42 0.94 16 40 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.09 1.40 8.09 -51.93 -0.42 0.98 16 44 H 0.08 0.97 7.60 -51.93 -0.39 0.58 16 LS Contribution 362.22 15.07 5.46 5.46 Total: -1.00 -32.76 362.22 -8.95 -41.72 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -7.70 Total: 1.34 kcal Atomic # 6 Polarization: -5.84 SS G_CDS: -1.72 Total: -7.56 kcal Atomic # 7 Polarization: -39.60 SS G_CDS: 0.31 Total: -39.29 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: -0.28 Total: -18.65 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.76 -8.95 -41.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354507949.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.851 kcal (2) G-P(sol) polarization free energy of solvation -32.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds