Wall clock time and date at job start Tue Mar 31 2020 05:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42905 * 109.46997 * 2 1 4 4 C 1.42893 * 114.00138 * 179.97438 * 3 2 1 5 5 C 1.53776 * 113.61615 * 149.99831 * 4 3 2 6 6 C 1.53782 * 87.08199 * 89.20291 * 5 4 3 7 7 C 1.50698 * 113.61817 * 139.97921 * 6 5 4 8 8 O 1.21285 * 119.99686 * 1.53696 * 7 6 5 9 9 N 1.34775 * 120.00318 * 181.52944 * 7 6 5 10 10 C 1.46499 * 120.00337 * 180.02562 * 9 7 6 11 11 C 1.50701 * 109.46992 * 269.99986 * 10 9 7 12 12 H 1.07998 * 120.00129 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99861 * 179.97438 * 11 10 9 14 14 N 1.31510 * 119.99913 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99734 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47432 * 0.02562 * 15 13 11 17 17 H 1.48506 * 109.46890 * 120.00210 * 15 13 11 18 18 H 1.48501 * 109.47062 * 240.00257 * 15 13 11 19 19 C 1.46502 * 120.00005 * 0.02562 * 9 7 6 20 20 C 1.52998 * 109.47482 * 270.00252 * 19 9 7 21 21 C 1.52995 * 117.49809 * 243.62544 * 20 19 9 22 22 C 1.52998 * 117.50248 * 174.99612 * 20 19 9 23 23 C 1.53779 * 87.17260 * 25.39126 * 6 5 4 24 24 H 1.08998 * 109.47462 * 300.00046 * 1 2 3 25 25 H 1.09003 * 109.47018 * 60.00575 * 1 2 3 26 26 H 1.09003 * 109.47177 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47462 * 239.99954 * 2 1 3 28 28 H 1.09003 * 109.47018 * 119.99424 * 2 1 3 29 29 H 1.09005 * 112.84929 * 18.80189 * 4 3 2 30 30 H 1.09002 * 113.61493 * 334.65874 * 5 4 3 31 31 H 1.08993 * 113.61794 * 203.74734 * 5 4 3 32 32 H 1.09008 * 113.61598 * 270.80490 * 6 5 4 33 33 H 1.09002 * 109.47391 * 149.99977 * 10 9 7 34 34 H 1.09001 * 109.46813 * 30.00033 * 10 9 7 35 35 H 0.97002 * 119.99768 * 179.97438 * 14 13 11 36 36 H 1.08998 * 109.46888 * 29.99915 * 19 9 7 37 37 H 1.08994 * 109.47490 * 149.99977 * 19 9 7 38 38 H 1.09008 * 115.54896 * 29.32623 * 20 19 9 39 39 H 1.09003 * 117.49829 * 359.97438 * 21 20 19 40 40 H 1.08998 * 117.50281 * 145.02177 * 21 20 19 41 41 H 1.08997 * 117.50012 * 214.97612 * 22 20 19 42 42 H 1.09000 * 117.49751 * 0.02562 * 22 20 19 43 43 H 1.08999 * 113.61525 * 89.15949 * 23 6 5 44 44 H 1.09001 * 113.61769 * 220.06612 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.9488 2.7252 -0.7039 6 6 3.8411 3.4323 0.6574 7 6 4.9864 4.3690 0.9435 8 8 5.8622 4.5255 0.1192 9 7 5.0374 5.0330 2.1152 10 6 6.1505 5.9441 2.3931 11 6 7.2659 5.1845 3.0639 12 1 7.1568 4.1286 3.2629 13 6 8.4262 5.8373 3.4226 14 7 8.5593 7.1229 3.1798 15 14 9.8090 4.8956 4.2534 16 1 9.4136 3.4729 4.4120 17 1 11.0350 4.9781 3.4194 18 1 10.0780 5.4868 5.5888 19 6 3.9797 4.8437 3.1111 20 6 2.8666 5.8661 2.8735 21 6 2.6059 6.8955 3.9750 22 6 1.6106 5.7573 3.7404 23 6 4.0025 2.0465 1.3043 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.9280 0.5457 -0.3228 30 1 3.2638 3.1180 -1.4553 31 1 4.9718 2.6339 -1.0687 32 1 2.8670 3.8873 0.8373 33 1 5.8097 6.7445 3.0499 34 1 6.5127 6.3710 1.4578 35 1 9.3754 7.5823 3.4325 36 1 3.5729 3.8365 3.0220 37 1 4.3926 4.9818 4.1103 38 1 2.7387 6.1904 1.8407 39 1 3.2273 6.8441 4.8691 40 1 2.3065 7.8973 3.6671 41 1 0.6565 6.0104 3.2782 42 1 1.5775 4.9576 4.4804 43 1 5.0402 1.7693 1.4896 44 1 3.3608 1.8921 2.1718 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354507949.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:50 Heat of formation + Delta-G solvation = -60.214188 kcal Electronic energy + Delta-G solvation = -22788.378246 eV Core-core repulsion = 19513.525864 eV Total energy + Delta-G solvation = -3274.852382 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.48840 -39.61022 -38.36227 -36.83150 -36.05630 -34.57608 -31.76255 -30.09733 -27.83140 -26.89198 -26.70029 -24.44567 -23.64792 -23.16845 -22.00313 -20.94446 -19.87121 -18.62534 -18.29366 -17.42282 -17.16429 -16.56156 -16.49139 -16.13497 -15.97661 -15.76611 -14.86145 -14.62668 -14.35187 -14.22408 -13.88301 -13.59170 -13.39477 -13.36516 -13.24565 -12.92022 -12.62054 -12.60790 -12.57978 -12.38270 -12.29419 -12.21823 -12.15671 -11.69437 -11.55032 -11.35355 -11.26534 -10.81323 -10.64887 -10.53022 -10.29474 -9.43462 -8.22377 -6.37447 1.35312 1.37810 1.49695 1.81266 2.28162 2.44189 2.63439 2.96607 3.06941 3.49324 3.57994 3.74009 3.79844 3.93227 4.03855 4.16363 4.25893 4.27486 4.33469 4.45548 4.46796 4.58642 4.61200 4.76373 4.78640 4.82147 4.85943 4.91085 4.98202 5.04095 5.06574 5.09284 5.12638 5.22879 5.28207 5.30079 5.32708 5.35364 5.58489 5.86784 6.06683 6.35616 6.70160 6.81279 7.28090 7.49719 8.85060 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.015631 B = 0.004820 C = 0.004094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.919797 B = 5807.941189 C = 6837.725591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.047 3.953 3 O -0.380 6.380 4 C 0.083 3.917 5 C -0.121 4.121 6 C -0.122 4.122 7 C 0.505 3.495 8 O -0.598 6.598 9 N -0.596 5.596 10 C 0.264 3.736 11 C -0.540 4.540 12 H 0.054 0.946 13 C 0.006 3.994 14 N -0.929 5.929 15 Si 0.969 3.031 16 H -0.265 1.265 17 H -0.282 1.282 18 H -0.269 1.269 19 C 0.144 3.856 20 C -0.187 4.187 21 C -0.189 4.189 22 C -0.142 4.142 23 C -0.135 4.135 24 H 0.059 0.941 25 H 0.057 0.943 26 H 0.089 0.911 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.096 0.904 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.126 0.874 33 H 0.019 0.981 34 H -0.007 1.007 35 H 0.267 0.733 36 H 0.099 0.901 37 H 0.070 0.930 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.093 0.907 41 H 0.111 0.889 42 H 0.111 0.889 43 H 0.081 0.919 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.489 -13.389 -1.013 22.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.029 4.029 3 O -0.299 6.299 4 C 0.025 3.975 5 C -0.159 4.159 6 C -0.143 4.143 7 C 0.294 3.706 8 O -0.480 6.480 9 N -0.325 5.325 10 C 0.143 3.857 11 C -0.579 4.579 12 H 0.072 0.928 13 C -0.192 4.192 14 N -0.569 5.569 15 Si 0.793 3.207 16 H -0.189 1.189 17 H -0.208 1.208 18 H -0.194 1.194 19 C 0.021 3.979 20 C -0.206 4.206 21 C -0.226 4.226 22 C -0.179 4.179 23 C -0.173 4.173 24 H 0.078 0.922 25 H 0.076 0.924 26 H 0.108 0.892 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.114 0.886 30 H 0.101 0.899 31 H 0.105 0.895 32 H 0.144 0.856 33 H 0.037 0.963 34 H 0.011 0.989 35 H 0.076 0.924 36 H 0.117 0.883 37 H 0.089 0.911 38 H 0.108 0.892 39 H 0.107 0.893 40 H 0.112 0.888 41 H 0.129 0.871 42 H 0.129 0.871 43 H 0.099 0.901 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -18.049 -12.990 -1.390 22.281 hybrid contribution 1.468 0.296 0.259 1.519 sum -16.581 -12.695 -1.132 20.913 Atomic orbital electron populations 1.21762 0.92812 1.03322 1.02731 1.22776 0.96321 0.82764 1.01049 1.87876 1.19358 1.28148 1.94525 1.22841 0.81768 0.97851 0.95020 1.23070 1.01871 0.95302 0.95622 1.22739 0.96928 0.94520 1.00080 1.21264 0.87441 0.80893 0.80964 1.90605 1.42615 1.66603 1.48166 1.48166 1.24192 1.43522 1.16655 1.18681 0.84174 0.88599 0.94282 1.21729 1.01424 0.95767 1.38977 0.92785 1.25885 1.00949 0.95867 0.96535 1.70072 1.28309 1.10182 1.48326 0.85352 0.78287 0.78858 0.78214 1.18937 1.20756 1.19406 1.21220 0.85910 0.99035 0.91741 1.22713 0.98791 1.02291 0.96802 1.23068 1.04104 0.95409 0.99977 1.23020 0.92991 1.00307 1.01606 1.23386 1.01950 0.92736 0.99209 0.92168 0.92385 0.89217 0.92409 0.92357 0.88608 0.89941 0.89490 0.85627 0.96297 0.98922 0.92450 0.88284 0.91142 0.89160 0.89276 0.88801 0.87091 0.87117 0.90064 0.88435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 10.28 71.98 0.74 -1.08 16 2 C 0.05 0.70 6.50 71.98 0.47 1.17 16 3 O -0.38 -8.14 10.27 -148.98 -1.53 -9.67 16 4 C 0.08 1.87 4.38 31.18 0.14 2.01 16 5 C -0.12 -3.43 7.23 31.12 0.22 -3.21 16 6 C -0.12 -3.79 2.74 -11.01 -0.03 -3.82 16 7 C 0.50 22.21 7.20 87.66 0.63 22.84 16 8 O -0.60 -32.39 15.49 -3.05 -0.05 -32.44 16 9 N -0.60 -26.63 2.46 -826.16 -2.03 -28.65 16 10 C 0.26 14.86 5.16 85.63 0.44 15.30 16 11 C -0.54 -31.93 9.39 25.60 0.24 -31.69 16 12 H 0.05 3.15 7.81 -2.91 -0.02 3.12 16 13 C 0.01 0.38 5.46 84.66 0.46 0.84 16 14 N -0.93 -57.42 13.29 21.45 0.28 -57.13 16 15 Si 0.97 45.55 29.54 68.60 2.03 47.58 16 16 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 17 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 18 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 19 C 0.14 4.82 5.40 86.38 0.47 5.29 16 20 C -0.19 -5.38 5.78 -10.80 -0.06 -5.45 16 21 C -0.19 -5.00 10.18 30.60 0.31 -4.69 16 22 C -0.14 -2.93 10.25 30.60 0.31 -2.62 16 23 C -0.13 -3.46 6.68 31.18 0.21 -3.25 16 24 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.10 1.78 7.87 -2.38 -0.02 1.76 16 30 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.09 2.82 7.45 -2.39 -0.02 2.80 16 32 H 0.13 3.53 7.69 -2.38 -0.02 3.51 16 33 H 0.02 1.09 8.07 -2.39 -0.02 1.07 16 34 H -0.01 -0.48 7.42 -2.39 -0.02 -0.50 16 35 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 36 H 0.10 2.74 5.66 -2.39 -0.01 2.73 16 37 H 0.07 2.50 7.80 -2.39 -0.02 2.48 16 38 H 0.09 2.82 8.14 -2.38 -0.02 2.81 16 39 H 0.09 2.48 8.03 -2.39 -0.02 2.47 16 40 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 41 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 42 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 43 H 0.08 2.33 8.09 -2.39 -0.02 2.31 16 44 H 0.10 2.11 7.60 -2.39 -0.02 2.10 16 Total: -1.00 -74.54 362.22 4.21 -70.33 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: 0.95 Total: 18.33 kcal Atomic # 6 Polarization: -12.90 SS G_CDS: 4.55 Total: -8.34 kcal Atomic # 7 Polarization: -84.04 SS G_CDS: -1.74 Total: -85.79 kcal Atomic # 8 Polarization: -40.52 SS G_CDS: -1.58 Total: -42.10 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Total: -74.54 4.21 -70.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354507949.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.116 kcal (2) G-P(sol) polarization free energy of solvation -74.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds