Wall clock time and date at job start Tue Mar 31 2020 06:22:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50703 * 119.99681 * 2 1 4 4 N 1.46499 * 109.46731 * 125.63222 * 3 2 1 5 5 C 1.46497 * 120.00681 * 274.87218 * 4 3 2 6 6 C 1.50701 * 109.47278 * 275.44808 * 5 4 3 7 7 H 1.07997 * 119.99722 * 359.97438 * 6 5 4 8 8 C 1.37876 * 120.00194 * 179.97438 * 6 5 4 9 9 N 1.31515 * 119.99977 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00009 * 179.97438 * 8 6 5 11 11 H 1.48491 * 109.47263 * 90.00081 * 10 8 6 12 12 H 1.48502 * 109.46961 * 209.99980 * 10 8 6 13 13 H 1.48497 * 109.47154 * 329.99859 * 10 8 6 14 14 C 1.34783 * 119.99685 * 94.87560 * 4 3 2 15 15 O 1.21282 * 120.00002 * 3.87469 * 14 4 3 16 16 C 1.50701 * 120.00042 * 183.87688 * 14 4 3 17 17 H 1.09004 * 109.46811 * 48.79426 * 16 14 4 18 18 C 1.52997 * 109.47113 * 288.80149 * 16 14 4 19 19 C 1.53007 * 109.46725 * 299.99530 * 18 16 14 20 20 C 1.52996 * 109.47077 * 300.00126 * 19 18 16 21 21 C 1.52995 * 109.47132 * 60.00123 * 20 19 18 22 22 H 1.09000 * 109.47349 * 59.99648 * 21 20 19 23 23 O 1.42900 * 109.47173 * 179.97438 * 21 20 19 24 24 C 1.42902 * 113.99979 * 269.99749 * 23 21 20 25 25 C 1.52996 * 109.47430 * 168.79569 * 16 14 4 26 26 H 1.08002 * 120.00108 * 359.97438 * 1 2 3 27 27 H 1.08001 * 119.99395 * 180.02562 * 1 2 3 28 28 H 1.08002 * 120.00108 * 180.02562 * 2 1 3 29 29 H 1.08996 * 109.47130 * 5.63816 * 3 2 1 30 30 H 1.08997 * 109.47444 * 245.63114 * 3 2 1 31 31 H 1.09007 * 109.46802 * 35.44019 * 5 4 3 32 32 H 1.09000 * 109.47785 * 155.43957 * 5 4 3 33 33 H 0.96996 * 120.00128 * 180.02562 * 9 8 6 34 34 H 1.09000 * 109.47350 * 179.97438 * 18 16 14 35 35 H 1.08995 * 109.47731 * 59.99566 * 18 16 14 36 36 H 1.09001 * 109.47201 * 60.00540 * 19 18 16 37 37 H 1.09003 * 109.46559 * 180.02562 * 19 18 16 38 38 H 1.09004 * 109.47240 * 180.02562 * 20 19 18 39 39 H 1.09000 * 109.47291 * 299.99735 * 20 19 18 40 40 H 1.08995 * 109.47469 * 300.00162 * 24 23 21 41 41 H 1.09007 * 109.46992 * 60.00493 * 24 23 21 42 42 H 1.08999 * 109.47314 * 179.97438 * 24 23 21 43 43 H 1.09003 * 109.47243 * 300.00704 * 25 16 14 44 44 H 1.09000 * 109.47291 * 179.97438 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 3.0045 1.3257 1.1226 5 6 2.5526 1.7512 2.4496 6 6 2.6164 3.2539 2.5441 7 1 2.9596 3.8339 1.7003 8 6 2.2365 3.8882 3.7079 9 7 1.8181 3.1819 4.7354 10 14 2.3162 5.7508 3.8253 11 1 1.0235 6.3305 3.3806 12 1 2.5788 6.1473 5.2321 13 1 3.4099 6.2551 2.9565 14 6 4.2861 0.9532 0.9346 15 8 4.6779 0.6685 -0.1774 16 6 5.2322 0.8904 2.1059 17 1 4.7653 0.3369 2.9207 18 6 5.5583 2.3098 2.5747 19 6 6.2136 3.0866 1.4310 20 6 7.5031 2.3803 1.0078 21 6 7.1769 0.9609 0.5390 22 1 6.4926 1.0063 -0.3082 23 8 8.3812 0.3014 0.1432 24 6 8.7110 0.4724 -1.2367 25 6 6.5217 0.1841 1.6827 26 1 -0.5400 0.9353 0.0004 27 1 -0.5399 -0.9354 0.0004 28 1 1.8501 -0.9353 -0.0004 29 1 1.3595 2.1311 0.1010 30 1 2.6124 1.4079 -0.9361 31 1 1.5259 1.4205 2.6071 32 1 3.1968 1.3115 3.2112 33 1 1.5506 3.6281 5.5540 34 1 6.2422 2.2644 3.4222 35 1 4.6397 2.8130 2.8762 36 1 5.5293 3.1321 0.5837 37 1 6.4464 4.0977 1.7651 38 1 7.9702 2.9340 0.1933 39 1 8.1874 2.3349 1.8550 40 1 7.9073 0.0724 -1.8547 41 1 8.8402 1.5335 -1.4506 42 1 9.6376 -0.0576 -1.4572 43 1 6.2893 -0.8272 1.3487 44 1 7.2061 0.1390 2.5298 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359378169.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:55 Heat of formation + Delta-G solvation = -74.393564 kcal Electronic energy + Delta-G solvation = -23880.248291 eV Core-core repulsion = 20604.781046 eV Total energy + Delta-G solvation = -3275.467246 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.16422 -37.93622 -35.84783 -35.34841 -33.46816 -32.22250 -30.55987 -29.48066 -27.56346 -26.13713 -25.81839 -23.14081 -22.34931 -21.77864 -20.34935 -19.53128 -17.88396 -16.70099 -16.42771 -15.81769 -15.63213 -15.31360 -14.80354 -14.54775 -14.41388 -14.22449 -13.76373 -13.22942 -12.91241 -12.65409 -12.47995 -12.35947 -11.89602 -11.78238 -11.74477 -11.53088 -11.24151 -11.21726 -11.04310 -10.89491 -10.75256 -10.47356 -10.40733 -10.21478 -9.97184 -9.80361 -9.73613 -9.15974 -9.02671 -8.67705 -8.50265 -7.76073 -6.24931 -4.30418 2.56212 3.18365 3.26583 3.28156 3.38383 4.01282 4.09424 4.28532 5.06560 5.15036 5.18775 5.31787 5.38717 5.49047 5.53785 5.54749 5.62499 5.71779 5.77564 5.82084 5.86905 5.97889 6.02376 6.06260 6.13023 6.19933 6.34196 6.37809 6.40557 6.54042 6.59574 6.72078 6.77707 6.86674 6.91981 7.04067 7.13891 7.29968 7.52224 7.60148 7.70598 7.99458 8.32708 8.73166 8.99377 9.34727 10.81106 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.014131 B = 0.006887 C = 0.005137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.976974 B = 4064.524800 C = 5448.824427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.155 4.155 3 C 0.141 3.859 4 N -0.590 5.590 5 C 0.234 3.766 6 C -0.533 4.533 7 H 0.063 0.937 8 C 0.067 3.933 9 N -0.886 5.886 10 Si 0.892 3.108 11 H -0.279 1.279 12 H -0.284 1.284 13 H -0.271 1.271 14 C 0.523 3.477 15 O -0.573 6.573 16 C -0.096 4.096 17 H 0.096 0.904 18 C -0.138 4.138 19 C -0.111 4.111 20 C -0.137 4.137 21 C 0.069 3.931 22 H 0.107 0.893 23 O -0.394 6.394 24 C 0.036 3.964 25 C -0.091 4.091 26 H 0.097 0.903 27 H 0.092 0.908 28 H 0.102 0.898 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.034 0.966 32 H 0.044 0.956 33 H 0.266 0.734 34 H 0.059 0.941 35 H 0.131 0.869 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.052 0.948 39 H 0.061 0.939 40 H 0.040 0.960 41 H 0.035 0.965 42 H 0.076 0.924 43 H 0.064 0.936 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.376 -3.511 -6.160 8.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.175 4.175 3 C 0.018 3.982 4 N -0.318 5.318 5 C 0.114 3.886 6 C -0.572 4.572 7 H 0.081 0.919 8 C -0.136 4.136 9 N -0.524 5.524 10 Si 0.719 3.281 11 H -0.205 1.205 12 H -0.210 1.210 13 H -0.196 1.196 14 C 0.313 3.687 15 O -0.455 6.455 16 C -0.117 4.117 17 H 0.114 0.886 18 C -0.175 4.175 19 C -0.149 4.149 20 C -0.175 4.175 21 C 0.012 3.988 22 H 0.124 0.876 23 O -0.314 6.314 24 C -0.061 4.061 25 C -0.129 4.129 26 H 0.116 0.884 27 H 0.110 0.890 28 H 0.120 0.880 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.052 0.948 32 H 0.061 0.939 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.148 0.852 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.080 0.920 40 H 0.059 0.941 41 H 0.053 0.947 42 H 0.095 0.905 43 H 0.082 0.918 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.597 -3.728 -6.378 9.269 hybrid contribution -0.207 1.176 0.129 1.201 sum 5.390 -2.552 -6.249 8.638 Atomic orbital electron populations 1.23764 0.95800 1.01533 1.01842 1.23368 0.96084 0.99227 0.98772 1.20405 0.92173 0.94680 0.90961 1.48209 1.08279 1.63244 1.12112 1.19528 0.96391 0.95120 0.77542 1.21394 1.44732 0.91557 0.99496 0.91851 1.24931 0.94688 0.98508 0.95512 1.69919 1.42898 1.35747 1.03795 0.86576 0.78701 0.85264 0.77523 1.20524 1.21006 1.19585 1.20534 0.82637 0.75686 0.89872 1.90429 1.76278 1.52561 1.26248 1.21197 0.94226 0.99371 0.96920 0.88646 1.22068 1.04923 0.93454 0.97089 1.21413 0.95853 0.98565 0.99020 1.22041 0.98331 0.96433 1.00689 1.22767 0.85803 0.90593 0.99631 0.87606 1.87795 1.43854 1.74502 1.25212 1.22661 1.00121 0.99960 0.83368 1.21342 0.95133 0.98800 0.97627 0.88433 0.88959 0.87989 0.90030 0.89968 0.94811 0.93857 0.92405 0.92232 0.85167 0.92097 0.92086 0.92947 0.92040 0.94129 0.94663 0.90526 0.91753 0.91406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.77 14.32 29.01 0.42 -2.35 16 2 C -0.16 -2.53 9.84 -36.03 -0.35 -2.89 16 3 C 0.14 2.56 5.95 -5.19 -0.03 2.53 16 4 N -0.59 -11.89 2.44 -176.43 -0.43 -12.32 16 5 C 0.23 5.26 4.68 -5.20 -0.02 5.23 16 6 C -0.53 -12.87 6.72 -34.44 -0.23 -13.10 16 7 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 8 C 0.07 1.68 5.46 -17.82 -0.10 1.59 16 9 N -0.89 -23.24 13.29 55.43 0.74 -22.51 16 10 Si 0.89 19.66 29.54 -169.99 -5.02 14.64 16 11 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 12 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 13 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 14 C 0.52 10.40 5.57 -10.98 -0.06 10.34 16 15 O -0.57 -12.04 12.81 5.56 0.07 -11.97 16 16 C -0.10 -1.74 2.17 -91.77 -0.20 -1.94 16 17 H 0.10 1.70 6.95 -51.93 -0.36 1.34 16 18 C -0.14 -2.54 5.18 -26.73 -0.14 -2.68 16 19 C -0.11 -1.94 5.70 -26.73 -0.15 -2.09 16 20 C -0.14 -2.21 5.54 -26.74 -0.15 -2.36 16 21 C 0.07 1.17 2.32 -26.73 -0.06 1.11 16 22 H 0.11 2.02 4.77 -51.93 -0.25 1.78 16 23 O -0.39 -6.54 10.35 -35.23 -0.36 -6.90 16 24 C 0.04 0.47 10.82 101.05 1.09 1.57 16 25 C -0.09 -1.54 4.84 -26.73 -0.13 -1.67 16 26 H 0.10 1.37 7.84 -52.49 -0.41 0.96 16 27 H 0.09 1.16 8.06 -52.49 -0.42 0.74 16 28 H 0.10 1.67 8.06 -52.49 -0.42 1.25 16 29 H 0.08 1.48 7.76 -51.93 -0.40 1.08 16 30 H 0.08 1.50 7.24 -51.93 -0.38 1.12 16 31 H 0.03 0.82 8.11 -51.93 -0.42 0.40 16 32 H 0.04 1.00 5.59 -51.93 -0.29 0.71 16 33 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 34 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.13 2.77 3.91 -51.93 -0.20 2.56 16 36 H 0.06 1.17 7.22 -51.93 -0.37 0.79 16 37 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.05 0.79 7.87 -51.93 -0.41 0.38 16 39 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 40 H 0.04 0.54 8.08 -51.93 -0.42 0.12 16 41 H 0.03 0.43 7.87 -51.92 -0.41 0.03 16 42 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 343.16 15.07 5.17 5.17 Total: -1.00 -26.38 343.16 -7.21 -33.59 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -7.25 Total: 6.99 kcal Atomic # 6 Polarization: -6.57 SS G_CDS: -0.12 Total: -6.69 kcal Atomic # 7 Polarization: -35.13 SS G_CDS: 0.31 Total: -34.82 kcal Atomic # 8 Polarization: -18.58 SS G_CDS: -0.29 Total: -18.87 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.02 Total: 14.64 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -26.38 -7.21 -33.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359378169.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.803 kcal (2) G-P(sol) polarization free energy of solvation -26.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds