Wall clock time and date at job start Tue Mar 31 2020 06:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50703 * 119.99981 * 2 1 4 4 N 1.46502 * 109.47136 * 124.99563 * 3 2 1 5 5 C 1.46503 * 119.99662 * 93.07122 * 4 3 2 6 6 C 1.50693 * 109.47384 * 95.83831 * 5 4 3 7 7 H 1.08004 * 120.00237 * 359.97438 * 6 5 4 8 8 C 1.37880 * 120.00305 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99668 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 120.00267 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47337 * 270.00184 * 10 8 6 12 12 H 1.48499 * 109.47088 * 30.00313 * 10 8 6 13 13 H 1.48503 * 109.46954 * 149.99715 * 10 8 6 14 14 C 1.34772 * 120.00346 * 273.06662 * 4 3 2 15 15 O 1.21282 * 119.99654 * 5.06806 * 14 4 3 16 16 C 1.50699 * 120.00241 * 185.07300 * 14 4 3 17 17 H 1.09003 * 109.47288 * 41.37568 * 16 14 4 18 18 C 1.52997 * 109.46726 * 281.37620 * 16 14 4 19 19 C 1.53004 * 109.47107 * 180.02562 * 18 16 14 20 20 C 1.53000 * 109.47246 * 59.99691 * 19 18 16 21 21 C 1.52998 * 109.47165 * 300.00532 * 20 19 18 22 22 H 1.09003 * 109.46984 * 299.99578 * 21 20 19 23 23 O 1.42906 * 109.47270 * 179.97438 * 21 20 19 24 24 C 1.42906 * 113.99480 * 89.99814 * 23 21 20 25 25 C 1.52997 * 109.47030 * 161.37530 * 16 14 4 26 26 H 1.07993 * 119.99970 * 180.02562 * 1 2 3 27 27 H 1.08000 * 119.99844 * 0.02562 * 1 2 3 28 28 H 1.07994 * 120.00091 * 179.97438 * 2 1 3 29 29 H 1.08997 * 109.47219 * 4.99588 * 3 2 1 30 30 H 1.08998 * 109.46779 * 244.99703 * 3 2 1 31 31 H 1.09005 * 109.47086 * 335.83019 * 5 4 3 32 32 H 1.09004 * 109.46828 * 215.83541 * 5 4 3 33 33 H 0.96999 * 119.99953 * 179.97438 * 9 8 6 34 34 H 1.09003 * 109.47195 * 300.00005 * 18 16 14 35 35 H 1.08994 * 109.47530 * 59.99928 * 18 16 14 36 36 H 1.09003 * 109.47039 * 300.00029 * 19 18 16 37 37 H 1.08992 * 109.47209 * 179.97438 * 19 18 16 38 38 H 1.08996 * 109.47416 * 180.02562 * 20 19 18 39 39 H 1.09007 * 109.47261 * 60.00056 * 20 19 18 40 40 H 1.09003 * 109.46868 * 299.99814 * 24 23 21 41 41 H 1.09000 * 109.47217 * 60.00268 * 24 23 21 42 42 H 1.09002 * 109.46595 * 180.02562 * 24 23 21 43 43 H 1.08996 * 109.47540 * 299.99733 * 25 16 14 44 44 H 1.08998 * 109.47323 * 60.00296 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3320 1.1315 5 6 4.3784 0.8884 0.9520 6 6 5.2583 2.0829 0.6876 7 1 4.8289 3.0735 0.6559 8 6 6.6114 1.9114 0.4861 9 7 7.1343 0.7053 0.5251 10 14 7.7019 3.3920 0.1576 11 1 7.7682 3.6434 -1.3045 12 1 7.1369 4.5839 0.8397 13 1 9.0676 3.1257 0.6766 14 6 2.5757 1.7647 2.3375 15 8 1.4083 2.0448 2.5100 16 6 3.5588 1.9008 3.4715 17 1 4.4886 2.3288 3.0970 18 6 3.8378 0.5218 4.0726 19 6 4.8354 0.6600 5.2245 20 6 4.2487 1.5761 6.3003 21 6 3.9696 2.9551 5.6991 22 1 4.8995 3.3833 5.3249 23 8 3.4210 3.8106 6.7037 24 6 4.4011 4.5450 7.4402 25 6 2.9725 2.8171 4.5474 26 1 -0.5400 -0.9352 0.0004 27 1 -0.5400 0.9353 -0.0004 28 1 1.8500 -0.9352 0.0004 29 1 1.3586 2.1317 0.0895 30 1 2.6213 1.4025 -0.9314 31 1 4.4335 0.2023 0.1068 32 1 4.7171 0.3805 1.8550 33 1 8.0862 0.5845 0.3830 34 1 2.9079 0.0938 4.4472 35 1 4.2554 -0.1310 3.3062 36 1 5.7654 1.0882 4.8503 37 1 5.0339 -0.3223 5.6530 38 1 4.9595 1.6749 7.1206 39 1 3.3187 1.1480 6.6745 40 1 5.0744 3.8500 7.9420 41 1 4.9717 5.1749 6.7577 42 1 3.9047 5.1697 8.1828 43 1 2.7737 3.7995 4.1192 44 1 2.0427 2.3891 4.9220 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359378171.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:57 Heat of formation + Delta-G solvation = -96.427013 kcal Electronic energy + Delta-G solvation = -23418.211133 eV Core-core repulsion = 20141.788445 eV Total energy + Delta-G solvation = -3276.422688 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.35684 -39.63261 -37.27985 -36.97079 -35.15237 -33.88772 -31.91902 -31.02206 -29.28301 -27.30743 -27.27182 -25.13837 -23.81988 -23.31201 -21.20879 -20.80456 -19.84878 -18.61018 -18.02939 -17.56721 -16.87126 -16.55304 -16.16021 -16.06436 -16.02862 -15.56868 -15.21113 -14.78817 -14.51666 -14.24610 -14.22152 -14.00181 -13.44070 -13.39867 -13.11562 -13.05203 -12.77101 -12.59938 -12.45675 -12.34292 -12.22838 -12.02852 -11.89214 -11.74421 -11.57397 -11.43676 -11.35286 -10.79311 -10.55940 -10.43134 -10.15327 -9.45480 -8.18512 -6.31771 1.29758 1.40641 1.44009 1.52238 1.77278 2.36333 2.46362 2.87494 3.11373 3.61103 3.75228 3.96595 4.02003 4.08220 4.17660 4.23397 4.33223 4.37637 4.46477 4.52948 4.54438 4.57143 4.63807 4.67357 4.78018 4.84841 4.89331 4.97122 5.01440 5.06472 5.09253 5.17940 5.21760 5.28922 5.42180 5.46978 5.66548 5.69203 5.80479 5.90732 6.09037 6.29512 6.57891 6.83884 7.32264 7.43673 8.86780 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.010355 B = 0.007523 C = 0.005074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2703.431750 B = 3721.273335 C = 5516.988136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.180 4.180 3 C 0.141 3.859 4 N -0.596 5.596 5 C 0.245 3.755 6 C -0.544 4.544 7 H 0.049 0.951 8 C 0.028 3.972 9 N -0.915 5.915 10 Si 0.948 3.052 11 H -0.278 1.278 12 H -0.271 1.271 13 H -0.279 1.279 14 C 0.518 3.482 15 O -0.592 6.592 16 C -0.096 4.096 17 H 0.097 0.903 18 C -0.105 4.105 19 C -0.107 4.107 20 C -0.130 4.130 21 C 0.093 3.907 22 H 0.063 0.937 23 O -0.406 6.406 24 C 0.024 3.976 25 C -0.086 4.086 26 H 0.118 0.882 27 H 0.095 0.905 28 H 0.108 0.892 29 H 0.068 0.932 30 H 0.084 0.916 31 H 0.020 0.980 32 H 0.045 0.955 33 H 0.268 0.732 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.070 0.930 40 H 0.054 0.946 41 H 0.043 0.957 42 H 0.100 0.900 43 H 0.051 0.949 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.489 0.623 8.723 9.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.199 4.199 3 C 0.019 3.981 4 N -0.325 5.325 5 C 0.124 3.876 6 C -0.583 4.583 7 H 0.068 0.932 8 C -0.173 4.173 9 N -0.554 5.554 10 Si 0.774 3.226 11 H -0.204 1.204 12 H -0.196 1.196 13 H -0.204 1.204 14 C 0.308 3.692 15 O -0.474 6.474 16 C -0.117 4.117 17 H 0.115 0.885 18 C -0.143 4.143 19 C -0.145 4.145 20 C -0.168 4.168 21 C 0.036 3.964 22 H 0.081 0.919 23 O -0.326 6.326 24 C -0.072 4.072 25 C -0.124 4.124 26 H 0.136 0.864 27 H 0.114 0.886 28 H 0.126 0.874 29 H 0.086 0.914 30 H 0.102 0.898 31 H 0.038 0.962 32 H 0.063 0.937 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.105 0.895 38 H 0.100 0.900 39 H 0.088 0.912 40 H 0.072 0.928 41 H 0.061 0.939 42 H 0.118 0.882 43 H 0.070 0.930 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.084 0.682 8.799 9.724 hybrid contribution 1.031 0.698 -0.735 1.446 sum -3.053 1.380 8.064 8.732 Atomic orbital electron populations 1.23938 0.95238 1.02558 0.98607 1.23247 0.96749 0.98238 1.01676 1.20501 0.92114 0.95917 0.89611 1.48239 1.12792 1.62645 1.08847 1.19329 0.75897 0.94627 0.97717 1.21628 0.93070 0.93776 1.49821 0.93233 1.25533 0.98933 0.98114 0.94683 1.69993 1.13395 1.22345 1.49634 0.85703 0.78367 0.80076 0.78464 1.20356 1.19614 1.20393 1.20826 0.88475 0.75562 0.84353 1.90556 1.19766 1.53342 1.83769 1.21176 0.98703 0.98776 0.93088 0.88489 1.21526 1.00087 0.94204 0.98469 1.21423 0.97794 1.00681 0.94562 1.21968 1.01946 0.94402 0.98447 1.22079 0.95661 0.90998 0.87710 0.91902 1.87865 1.34863 1.59216 1.50619 1.22986 0.92697 0.95600 0.95953 1.21223 0.98664 0.98657 0.93829 0.86427 0.88646 0.87424 0.91410 0.89817 0.96196 0.93728 0.92304 0.91803 0.91605 0.91972 0.89475 0.89993 0.91167 0.92781 0.93881 0.88190 0.93022 0.91628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.74 14.32 67.78 0.97 -3.77 16 2 C -0.18 -5.97 9.83 25.65 0.25 -5.72 16 3 C 0.14 5.37 5.75 85.63 0.49 5.86 16 4 N -0.60 -25.50 2.46 -830.50 -2.04 -27.55 16 5 C 0.24 11.46 4.84 85.63 0.41 11.87 16 6 C -0.54 -27.61 8.12 25.60 0.21 -27.40 16 7 H 0.05 2.59 7.81 -2.91 -0.02 2.56 16 8 C 0.03 1.44 5.46 84.66 0.46 1.90 16 9 N -0.91 -48.60 13.29 21.45 0.28 -48.32 16 10 Si 0.95 40.76 29.54 68.60 2.03 42.78 16 11 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 12 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 13 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 14 C 0.52 22.26 6.78 87.66 0.59 22.85 16 15 O -0.59 -27.46 15.70 -3.04 -0.05 -27.51 16 16 C -0.10 -3.64 1.73 -11.54 -0.02 -3.66 16 17 H 0.10 4.05 6.53 -2.39 -0.02 4.04 16 18 C -0.11 -3.49 4.96 30.59 0.15 -3.34 16 19 C -0.11 -2.91 5.92 30.60 0.18 -2.73 16 20 C -0.13 -3.27 5.54 30.59 0.17 -3.10 16 21 C 0.09 2.72 2.61 30.58 0.08 2.80 16 22 H 0.06 1.82 7.79 -2.39 -0.02 1.80 16 23 O -0.41 -11.64 10.35 -148.98 -1.54 -13.18 16 24 C 0.02 0.48 10.82 113.37 1.23 1.71 16 25 C -0.09 -3.00 4.30 30.58 0.13 -2.87 16 26 H 0.12 2.74 8.06 -2.91 -0.02 2.72 16 27 H 0.10 2.73 7.84 -2.91 -0.02 2.70 16 28 H 0.11 3.50 8.06 -2.91 -0.02 3.48 16 29 H 0.07 2.61 7.24 -2.39 -0.02 2.59 16 30 H 0.08 3.12 8.05 -2.39 -0.02 3.11 16 31 H 0.02 0.99 8.03 -2.38 -0.02 0.97 16 32 H 0.05 2.12 4.70 -2.38 -0.01 2.11 16 33 H 0.27 13.52 8.31 -92.71 -0.77 12.75 16 34 H 0.06 2.04 8.14 -2.39 -0.02 2.03 16 35 H 0.07 2.39 5.66 -2.39 -0.01 2.37 16 36 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.08 1.72 7.87 -2.39 -0.02 1.70 16 39 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 40 H 0.05 0.94 7.87 -2.39 -0.02 0.92 16 41 H 0.04 0.85 8.09 -2.39 -0.02 0.83 16 42 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 44 H 0.06 2.41 7.91 -2.39 -0.02 2.39 16 Total: -1.00 -59.08 352.29 4.94 -54.14 By element: Atomic # 1 Polarization: 24.28 SS G_CDS: 0.95 Total: 25.23 kcal Atomic # 6 Polarization: -10.90 SS G_CDS: 5.31 Total: -5.59 kcal Atomic # 7 Polarization: -74.11 SS G_CDS: -1.76 Total: -75.87 kcal Atomic # 8 Polarization: -39.10 SS G_CDS: -1.59 Total: -40.69 kcal Atomic # 14 Polarization: 40.76 SS G_CDS: 2.03 Total: 42.78 kcal Total: -59.08 4.94 -54.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359378171.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.291 kcal (2) G-P(sol) polarization free energy of solvation -59.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds