Wall clock time and date at job start Tue Mar 31 2020 05:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42902 * 109.47548 * 2 1 4 4 C 1.42893 * 114.00284 * 180.02562 * 3 2 1 5 5 C 1.54022 * 113.57512 * 210.00051 * 4 3 2 6 6 C 1.52496 * 86.67945 * 220.84251 * 5 4 3 7 7 C 1.52503 * 88.42595 * 24.70691 * 6 5 4 8 8 C 1.53946 * 115.80526 * 142.75068 * 6 5 4 9 9 C 1.55137 * 101.42593 * 163.38756 * 8 6 5 10 10 N 1.47541 * 104.99272 * 324.25060 * 9 8 6 11 11 C 1.34774 * 125.65900 * 203.90576 * 10 9 8 12 12 O 1.21281 * 120.00399 * 180.02562 * 11 10 9 13 13 C 1.50706 * 120.00301 * 0.02562 * 11 10 9 14 14 C 1.52991 * 109.47366 * 180.02562 * 13 11 10 15 15 C 1.50699 * 109.47135 * 180.02562 * 14 13 11 16 16 H 1.07996 * 120.00298 * 359.97438 * 15 14 13 17 17 C 1.37879 * 120.00235 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99581 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00387 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47121 * 59.99626 * 19 17 15 21 21 H 1.48498 * 109.47303 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.46938 * 299.99668 * 19 17 15 23 23 C 1.47333 * 108.67923 * 23.93800 * 10 9 8 24 24 H 1.08993 * 109.47143 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.46704 * 299.99829 * 1 2 3 26 26 H 1.08998 * 109.47197 * 59.99924 * 1 2 3 27 27 H 1.09007 * 109.47035 * 240.00233 * 2 1 3 28 28 H 1.08998 * 109.47197 * 120.00076 * 2 1 3 29 29 H 1.09005 * 112.82331 * 341.07156 * 4 3 2 30 30 H 1.09001 * 113.67771 * 106.39857 * 5 4 3 31 31 H 1.08995 * 113.76346 * 335.29778 * 5 4 3 32 32 H 1.09002 * 113.67802 * 89.73580 * 7 6 5 33 33 H 1.08997 * 113.68474 * 220.84161 * 7 6 5 34 34 H 1.09001 * 111.03722 * 45.35051 * 8 6 5 35 35 H 1.09002 * 111.06704 * 281.43511 * 8 6 5 36 36 H 1.08997 * 110.34169 * 83.12925 * 9 8 6 37 37 H 1.09003 * 110.33900 * 205.37593 * 9 8 6 38 38 H 1.08995 * 109.46853 * 300.00658 * 13 11 10 39 39 H 1.09009 * 109.46861 * 59.99713 * 13 11 10 40 40 H 1.09004 * 109.47067 * 299.99779 * 14 13 11 41 41 H 1.08992 * 109.47220 * 59.99947 * 14 13 11 42 42 H 0.97003 * 119.99843 * 180.02562 * 18 17 15 43 43 H 1.09001 * 109.98044 * 238.66712 * 23 10 9 44 44 H 1.08999 * 110.00600 * 117.40847 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.9488 2.7273 0.7052 6 6 4.9631 2.8367 -0.4282 7 6 4.0041 2.0406 -1.3070 8 6 5.2815 4.2647 -0.9071 9 6 6.5981 4.0380 -1.6957 10 7 7.3155 2.9884 -0.9471 11 6 8.6469 2.7801 -0.9667 12 8 9.1302 1.8829 -0.3090 13 6 9.5354 3.6620 -1.8057 14 6 10.9904 3.2153 -1.6506 15 6 11.8789 4.0976 -2.4892 16 1 11.4488 4.8968 -3.0745 17 6 13.2409 3.8839 -2.5099 18 7 13.7646 2.9104 -1.7975 19 14 14.3423 4.9781 -3.5488 20 1 14.2070 6.3868 -3.0987 21 1 15.7546 4.5444 -3.3983 22 1 13.9411 4.8732 -4.9747 23 6 6.3349 2.2053 -0.1753 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5138 0.8900 29 1 3.9276 0.5460 0.3250 30 1 4.3993 2.5331 1.6786 31 1 3.2271 3.5438 0.7271 32 1 3.2971 2.6614 -1.8574 33 1 4.4985 1.2999 -1.9354 34 1 5.4421 4.9341 -0.0619 35 1 4.4949 4.6437 -1.5596 36 1 6.3796 3.6989 -2.7083 37 1 7.1871 4.9548 -1.7212 38 1 9.2412 3.5836 -2.8522 39 1 9.4355 4.6965 -1.4768 40 1 11.2849 3.2935 -0.6040 41 1 11.0900 2.1810 -1.9798 42 1 14.7229 2.7603 -1.8118 43 1 6.5754 2.2502 0.8869 44 1 6.3359 1.1691 -0.5135 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360622378.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:26 Heat of formation + Delta-G solvation = -73.960720 kcal Electronic energy + Delta-G solvation = -21921.079967 eV Core-core repulsion = 18645.631491 eV Total energy + Delta-G solvation = -3275.448476 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.86478 -38.89701 -37.45112 -35.10029 -33.44867 -31.48450 -30.95017 -30.12133 -27.95131 -26.19309 -25.46791 -23.64873 -23.15649 -21.79342 -21.30686 -18.83938 -18.58550 -17.18627 -16.76535 -16.27007 -15.86065 -15.75195 -15.47041 -14.79418 -14.42037 -14.32502 -14.09931 -13.51344 -13.20983 -13.11763 -12.75693 -12.56155 -12.35652 -12.28626 -12.12007 -12.05611 -11.77326 -11.54984 -11.36314 -11.14669 -11.03934 -10.89994 -10.62210 -10.57993 -10.38697 -9.92918 -9.69439 -9.63320 -9.17043 -9.00463 -8.38779 -8.29249 -5.94530 -3.99000 3.24824 3.28478 3.35364 3.37482 3.40042 3.42074 4.14502 4.20277 4.31974 4.46695 4.48531 4.67566 4.72389 4.75672 4.93120 5.02646 5.12849 5.21944 5.28273 5.40114 5.41662 5.49230 5.52139 5.54228 5.59434 5.63801 5.69648 5.73623 5.77630 5.82465 5.91819 5.98519 6.04734 6.24388 6.26021 6.56358 6.91660 6.98223 7.75625 7.87866 7.88001 8.08859 8.39988 8.76588 9.09227 9.64239 11.16410 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.047570 B = 0.002657 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.460149 B =10536.504335 C =10784.572184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.376 6.376 4 C 0.062 3.938 5 C -0.117 4.117 6 C -0.095 4.095 7 C -0.138 4.138 8 C -0.116 4.116 9 C 0.103 3.897 10 N -0.631 5.631 11 C 0.526 3.474 12 O -0.534 6.534 13 C -0.124 4.124 14 C 0.037 3.963 15 C -0.527 4.527 16 H 0.055 0.945 17 C 0.057 3.943 18 N -0.890 5.890 19 Si 0.894 3.106 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 C 0.131 3.869 24 H 0.069 0.931 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.048 0.952 28 H 0.048 0.952 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.067 0.933 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.023 0.977 41 H 0.023 0.977 42 H 0.261 0.739 43 H 0.068 0.932 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.822 -1.197 2.558 26.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.022 4.022 3 O -0.295 6.295 4 C 0.004 3.996 5 C -0.155 4.155 6 C -0.096 4.096 7 C -0.175 4.175 8 C -0.154 4.154 9 C -0.020 4.020 10 N -0.368 5.368 11 C 0.317 3.683 12 O -0.409 6.409 13 C -0.163 4.163 14 C -0.001 4.001 15 C -0.565 4.565 16 H 0.073 0.927 17 C -0.144 4.144 18 N -0.528 5.528 19 Si 0.721 3.279 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.202 1.202 23 C 0.008 3.992 24 H 0.088 0.912 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.105 0.895 30 H 0.095 0.905 31 H 0.114 0.886 32 H 0.112 0.888 33 H 0.091 0.909 34 H 0.098 0.902 35 H 0.102 0.898 36 H 0.085 0.915 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.042 0.958 41 H 0.042 0.958 42 H 0.071 0.929 43 H 0.087 0.913 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -26.382 -1.645 2.963 26.599 hybrid contribution 0.785 0.311 -0.603 1.038 sum -25.597 -1.334 2.360 25.741 Atomic orbital electron populations 1.21746 0.93869 1.02202 1.03057 1.22511 0.95521 0.84097 1.00080 1.87937 1.20759 1.26198 1.94607 1.23826 0.80846 0.98078 0.96802 1.23063 0.96998 0.97901 0.97558 1.21704 0.93529 0.96503 0.97845 1.23388 0.97670 0.99630 0.96856 1.22601 0.97047 0.95358 1.00351 1.22302 0.92645 0.91754 0.95342 1.48820 1.06052 1.33930 1.47994 1.21342 0.79886 0.85112 0.82005 1.90673 1.73419 1.33172 1.43675 1.21848 0.98242 0.98116 0.98140 1.18906 0.86248 0.97004 0.97908 1.21178 0.91963 1.15671 1.27730 0.92651 1.25033 0.98245 0.95418 0.95727 1.69992 1.12021 1.30447 1.40378 0.86641 0.79607 0.80850 0.80758 1.20248 1.21293 1.20249 1.21438 0.85810 0.95184 0.96779 0.91199 0.91905 0.91888 0.93371 0.93395 0.89477 0.90520 0.88580 0.88759 0.90868 0.90232 0.89778 0.91522 0.90189 0.90338 0.90314 0.95833 0.95845 0.92899 0.91335 0.91768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 10.28 37.16 0.38 -0.54 16 2 C 0.05 0.41 6.50 37.16 0.24 0.65 16 3 O -0.38 -3.60 10.36 -35.23 -0.36 -3.96 16 4 C 0.06 0.55 4.20 -25.69 -0.11 0.44 16 5 C -0.12 -1.00 7.25 -26.46 -0.19 -1.19 16 6 C -0.10 -0.91 0.92 -154.50 -0.14 -1.05 16 7 C -0.14 -1.21 7.16 -26.45 -0.19 -1.40 16 8 C -0.12 -1.04 6.44 -25.11 -0.16 -1.20 16 9 C 0.10 1.18 6.70 -2.34 -0.02 1.16 16 10 N -0.63 -9.78 3.34 -170.78 -0.57 -10.35 16 11 C 0.53 10.76 7.85 -10.98 -0.09 10.67 16 12 O -0.53 -13.21 16.31 5.56 0.09 -13.12 16 13 C -0.12 -2.61 4.65 -27.88 -0.13 -2.74 16 14 C 0.04 1.01 4.26 -27.89 -0.12 0.90 16 15 C -0.53 -15.15 9.11 -34.44 -0.31 -15.47 16 16 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 17 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 18 N -0.89 -27.72 13.29 55.43 0.74 -26.98 16 19 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 C 0.13 1.71 6.23 -3.53 -0.02 1.68 16 24 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 25 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.09 0.73 7.87 -51.93 -0.41 0.32 16 30 H 0.08 0.64 8.01 -51.93 -0.42 0.22 16 31 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.09 0.79 8.03 -51.93 -0.42 0.37 16 33 H 0.07 0.68 8.03 -51.93 -0.42 0.26 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.08 0.60 7.98 -51.93 -0.41 0.19 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.08 0.89 7.49 -51.93 -0.39 0.50 16 38 H 0.08 1.53 8.14 -51.93 -0.42 1.10 16 39 H 0.08 1.52 7.85 -51.92 -0.41 1.11 16 40 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 41 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 42 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 43 H 0.07 0.94 7.99 -51.93 -0.41 0.52 16 44 H 0.06 0.87 7.89 -51.93 -0.41 0.46 16 LS Contribution 357.82 15.07 5.39 5.39 Total: -1.00 -34.50 357.82 -8.57 -43.07 By element: Atomic # 1 Polarization: 3.51 SS G_CDS: -7.88 Total: -4.38 kcal Atomic # 6 Polarization: -5.54 SS G_CDS: -0.95 Total: -6.49 kcal Atomic # 7 Polarization: -37.50 SS G_CDS: 0.17 Total: -37.33 kcal Atomic # 8 Polarization: -16.81 SS G_CDS: -0.27 Total: -17.08 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.50 -8.57 -43.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360622378.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.894 kcal (2) G-P(sol) polarization free energy of solvation -34.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds