Wall clock time and date at job start Tue Mar 31 2020 05:36:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42902 * 109.47548 * 2 1 4 4 C 1.42893 * 114.00284 * 180.02562 * 3 2 1 5 5 C 1.54022 * 113.57512 * 210.00051 * 4 3 2 6 6 C 1.52496 * 86.67945 * 220.84251 * 5 4 3 7 7 C 1.52503 * 88.42595 * 24.70691 * 6 5 4 8 8 C 1.53946 * 115.80526 * 142.75068 * 6 5 4 9 9 C 1.55137 * 101.42593 * 163.38756 * 8 6 5 10 10 N 1.47541 * 104.99272 * 324.25060 * 9 8 6 11 11 C 1.34774 * 125.65900 * 203.90576 * 10 9 8 12 12 O 1.21281 * 120.00399 * 180.02562 * 11 10 9 13 13 C 1.50706 * 120.00301 * 0.02562 * 11 10 9 14 14 C 1.52991 * 109.47366 * 180.02562 * 13 11 10 15 15 C 1.50699 * 109.47135 * 180.02562 * 14 13 11 16 16 H 1.07996 * 120.00298 * 359.97438 * 15 14 13 17 17 C 1.37879 * 120.00235 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99581 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00387 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47121 * 59.99626 * 19 17 15 21 21 H 1.48498 * 109.47303 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.46938 * 299.99668 * 19 17 15 23 23 C 1.47333 * 108.67923 * 23.93800 * 10 9 8 24 24 H 1.08993 * 109.47143 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.46704 * 299.99829 * 1 2 3 26 26 H 1.08998 * 109.47197 * 59.99924 * 1 2 3 27 27 H 1.09007 * 109.47035 * 240.00233 * 2 1 3 28 28 H 1.08998 * 109.47197 * 120.00076 * 2 1 3 29 29 H 1.09005 * 112.82331 * 341.07156 * 4 3 2 30 30 H 1.09001 * 113.67771 * 106.39857 * 5 4 3 31 31 H 1.08995 * 113.76346 * 335.29778 * 5 4 3 32 32 H 1.09002 * 113.67802 * 89.73580 * 7 6 5 33 33 H 1.08997 * 113.68474 * 220.84161 * 7 6 5 34 34 H 1.09001 * 111.03722 * 45.35051 * 8 6 5 35 35 H 1.09002 * 111.06704 * 281.43511 * 8 6 5 36 36 H 1.08997 * 110.34169 * 83.12925 * 9 8 6 37 37 H 1.09003 * 110.33900 * 205.37593 * 9 8 6 38 38 H 1.08995 * 109.46853 * 300.00658 * 13 11 10 39 39 H 1.09009 * 109.46861 * 59.99713 * 13 11 10 40 40 H 1.09004 * 109.47067 * 299.99779 * 14 13 11 41 41 H 1.08992 * 109.47220 * 59.99947 * 14 13 11 42 42 H 0.97003 * 119.99843 * 180.02562 * 18 17 15 43 43 H 1.09001 * 109.98044 * 238.66712 * 23 10 9 44 44 H 1.08999 * 110.00600 * 117.40847 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.9488 2.7273 0.7052 6 6 4.9631 2.8367 -0.4282 7 6 4.0041 2.0406 -1.3070 8 6 5.2815 4.2647 -0.9071 9 6 6.5981 4.0380 -1.6957 10 7 7.3155 2.9884 -0.9471 11 6 8.6469 2.7801 -0.9667 12 8 9.1302 1.8829 -0.3090 13 6 9.5354 3.6620 -1.8057 14 6 10.9904 3.2153 -1.6506 15 6 11.8789 4.0976 -2.4892 16 1 11.4488 4.8968 -3.0745 17 6 13.2409 3.8839 -2.5099 18 7 13.7646 2.9104 -1.7975 19 14 14.3423 4.9781 -3.5488 20 1 14.2070 6.3868 -3.0987 21 1 15.7546 4.5444 -3.3983 22 1 13.9411 4.8732 -4.9747 23 6 6.3349 2.2053 -0.1753 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5138 0.8900 29 1 3.9276 0.5460 0.3250 30 1 4.3993 2.5331 1.6786 31 1 3.2271 3.5438 0.7271 32 1 3.2971 2.6614 -1.8574 33 1 4.4985 1.2999 -1.9354 34 1 5.4421 4.9341 -0.0619 35 1 4.4949 4.6437 -1.5596 36 1 6.3796 3.6989 -2.7083 37 1 7.1871 4.9548 -1.7212 38 1 9.2412 3.5836 -2.8522 39 1 9.4355 4.6965 -1.4768 40 1 11.2849 3.2935 -0.6040 41 1 11.0900 2.1810 -1.9798 42 1 14.7229 2.7603 -1.8118 43 1 6.5754 2.2502 0.8869 44 1 6.3359 1.1691 -0.5135 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360622378.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:25 Heat of formation + Delta-G solvation = -95.976540 kcal Electronic energy + Delta-G solvation = -21922.034644 eV Core-core repulsion = 18645.631491 eV Total energy + Delta-G solvation = -3276.403154 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.79285 -40.22721 -38.37333 -36.14612 -35.59496 -33.07741 -32.02157 -31.06391 -29.23234 -27.32927 -26.83752 -24.87903 -23.70900 -23.18478 -22.56036 -20.15912 -19.55079 -18.77327 -17.85993 -17.45127 -17.30025 -16.61503 -16.51544 -16.38396 -15.97934 -15.55501 -15.13380 -14.55764 -14.27528 -14.13358 -13.85397 -13.78102 -13.71927 -13.32293 -13.15373 -13.04850 -12.85386 -12.76285 -12.75817 -12.52301 -12.18501 -12.04305 -11.94321 -11.82344 -11.62979 -11.34822 -11.31511 -11.11092 -10.77088 -10.56907 -10.34985 -9.67511 -8.18545 -6.33212 1.41753 1.46794 1.54503 1.64598 1.99362 2.43079 2.75410 3.14028 3.35002 3.41805 3.51006 3.78103 3.86447 3.92275 4.12903 4.20881 4.25990 4.35762 4.43878 4.45278 4.48548 4.51665 4.63423 4.70960 4.75500 4.83799 4.87969 4.89284 4.97327 5.00412 5.05331 5.06190 5.13802 5.23651 5.27049 5.32111 5.42169 5.49450 5.59807 5.83113 6.15772 6.34558 6.47992 6.84728 7.20928 7.37036 8.94064 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.047570 B = 0.002657 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.460149 B =10536.504335 C =10784.572184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.047 3.953 3 O -0.389 6.389 4 C 0.059 3.941 5 C -0.111 4.111 6 C -0.088 4.088 7 C -0.131 4.131 8 C -0.105 4.105 9 C 0.091 3.909 10 N -0.623 5.623 11 C 0.522 3.478 12 O -0.593 6.593 13 C -0.110 4.110 14 C 0.043 3.957 15 C -0.544 4.544 16 H 0.077 0.923 17 C -0.009 4.009 18 N -0.938 5.938 19 Si 0.977 3.023 20 H -0.261 1.261 21 H -0.288 1.288 22 H -0.261 1.261 23 C 0.125 3.875 24 H 0.085 0.915 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.108 0.892 32 H 0.107 0.893 33 H 0.066 0.934 34 H 0.084 0.916 35 H 0.113 0.887 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.101 0.899 39 H 0.103 0.897 40 H -0.019 1.019 41 H -0.019 1.019 42 H 0.263 0.737 43 H 0.058 0.942 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.905 0.981 1.066 28.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.029 4.029 3 O -0.309 6.309 4 C 0.001 3.999 5 C -0.148 4.148 6 C -0.088 4.088 7 C -0.169 4.169 8 C -0.143 4.143 9 C -0.031 4.031 10 N -0.357 5.357 11 C 0.313 3.687 12 O -0.474 6.474 13 C -0.150 4.150 14 C 0.005 3.995 15 C -0.582 4.582 16 H 0.095 0.905 17 C -0.206 4.206 18 N -0.578 5.578 19 Si 0.800 3.200 20 H -0.186 1.186 21 H -0.213 1.213 22 H -0.186 1.186 23 C 0.003 3.997 24 H 0.104 0.896 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.104 0.896 30 H 0.094 0.906 31 H 0.126 0.874 32 H 0.125 0.875 33 H 0.085 0.915 34 H 0.103 0.897 35 H 0.132 0.868 36 H 0.100 0.900 37 H 0.107 0.893 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.000 1.000 41 H -0.001 1.001 42 H 0.072 0.928 43 H 0.077 0.923 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -28.548 0.570 1.451 28.590 hybrid contribution 1.350 -0.427 -0.104 1.420 sum -27.198 0.143 1.347 27.231 Atomic orbital electron populations 1.21754 0.92852 1.03217 1.02787 1.22681 0.96413 0.83373 1.00457 1.87911 1.20892 1.27382 1.94684 1.23855 0.80828 0.98259 0.96939 1.23048 0.96561 0.98135 0.97094 1.21568 0.91570 0.96762 0.98932 1.23368 0.97355 0.99433 0.96702 1.22630 0.96205 0.94755 1.00665 1.22703 0.93586 0.90764 0.96034 1.48739 1.04875 1.34579 1.47485 1.21127 0.81639 0.84399 0.81579 1.90645 1.75028 1.35534 1.46161 1.21586 0.94371 0.99186 0.99823 1.18687 0.90807 0.94912 0.95056 1.21666 0.92591 1.16110 1.27810 0.90492 1.26184 1.00331 0.96983 0.97094 1.70183 1.12496 1.32735 1.42374 0.85333 0.76715 0.78844 0.79099 1.18589 1.21333 1.18600 1.21600 0.87304 0.94964 0.95864 0.89598 0.92151 0.92123 0.93071 0.92985 0.89621 0.90577 0.87396 0.87504 0.91523 0.89721 0.86833 0.89969 0.89340 0.88074 0.87929 1.00044 1.00090 0.92827 0.92315 0.92637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 10.28 71.98 0.74 -0.84 16 2 C 0.05 0.64 6.50 71.98 0.47 1.10 16 3 O -0.39 -6.77 10.36 -148.98 -1.54 -8.31 16 4 C 0.06 0.94 4.20 31.27 0.13 1.07 16 5 C -0.11 -1.65 7.25 30.77 0.22 -1.43 16 6 C -0.09 -1.48 0.92 -52.17 -0.05 -1.53 16 7 C -0.13 -2.01 7.16 30.77 0.22 -1.79 16 8 C -0.10 -1.51 6.44 31.65 0.20 -1.31 16 9 C 0.09 1.83 6.70 86.91 0.58 2.41 16 10 N -0.62 -18.89 3.34 -812.60 -2.71 -21.61 16 11 C 0.52 21.86 7.85 87.66 0.69 22.55 16 12 O -0.59 -31.11 16.31 -3.03 -0.05 -31.16 16 13 C -0.11 -4.65 4.65 29.85 0.14 -4.51 16 14 C 0.04 2.47 4.26 29.84 0.13 2.60 16 15 C -0.54 -31.49 9.11 25.60 0.23 -31.25 16 16 H 0.08 4.02 7.74 -2.91 -0.02 4.00 16 17 C -0.01 -0.50 5.46 84.65 0.46 -0.04 16 18 N -0.94 -60.38 13.29 21.45 0.28 -60.09 16 19 Si 0.98 44.64 29.54 68.60 2.03 46.67 16 20 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 21 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 22 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 23 C 0.13 3.23 6.23 86.26 0.54 3.76 16 24 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 25 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 28 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.09 1.37 7.87 -2.38 -0.02 1.35 16 30 H 0.08 1.16 8.01 -2.39 -0.02 1.14 16 31 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.11 1.42 8.03 -2.39 -0.02 1.40 16 33 H 0.07 1.12 8.03 -2.39 -0.02 1.10 16 34 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.11 1.07 7.98 -2.39 -0.02 1.05 16 36 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.09 1.68 7.49 -2.39 -0.02 1.66 16 38 H 0.10 3.79 8.14 -2.39 -0.02 3.77 16 39 H 0.10 3.82 7.85 -2.38 -0.02 3.80 16 40 H -0.02 -1.23 8.10 -2.38 -0.02 -1.24 16 41 H -0.02 -1.26 8.10 -2.39 -0.02 -1.28 16 42 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16 43 H 0.06 1.63 7.99 -2.39 -0.02 1.61 16 44 H 0.06 1.53 7.89 -2.39 -0.02 1.51 16 Total: -1.00 -78.65 357.82 3.66 -74.99 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: 0.94 Total: 8.71 kcal Atomic # 6 Polarization: -13.90 SS G_CDS: 4.71 Total: -9.20 kcal Atomic # 7 Polarization: -79.27 SS G_CDS: -2.43 Total: -81.70 kcal Atomic # 8 Polarization: -37.88 SS G_CDS: -1.59 Total: -39.47 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -78.65 3.66 -74.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360622378.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.990 kcal (2) G-P(sol) polarization free energy of solvation -78.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds