Wall clock time and date at job start Tue Mar 31 2020 05:35:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46500 * 109.47304 * 2 1 4 4 C 1.46497 * 120.00106 * 94.82062 * 3 2 1 5 5 C 1.50699 * 109.46968 * 264.33839 * 4 3 2 6 6 H 1.08002 * 120.00403 * 0.02562 * 5 4 3 7 7 C 1.37885 * 120.00168 * 179.97438 * 5 4 3 8 8 N 1.31520 * 119.99530 * 0.02562 * 7 5 4 9 9 Si 1.86793 * 120.00157 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47092 * 180.02562 * 9 7 5 11 11 H 1.48499 * 109.47246 * 300.00022 * 9 7 5 12 12 H 1.48496 * 109.47169 * 60.00597 * 9 7 5 13 13 C 1.34774 * 119.99757 * 274.82147 * 3 2 1 14 14 O 1.21281 * 120.00291 * 4.24489 * 13 3 2 15 15 C 1.50700 * 119.99701 * 184.24710 * 13 3 2 16 16 H 1.08992 * 109.73888 * 305.75075 * 15 13 3 17 17 C 1.53584 * 109.73997 * 185.08470 * 15 13 3 18 18 C 1.52947 * 109.43395 * 168.23683 * 17 15 13 19 19 C 1.52340 * 110.21226 * 78.33074 * 18 17 15 20 20 C 1.53449 * 109.56924 * 44.39405 * 19 18 17 21 21 C 1.53908 * 108.29707 * 245.81401 * 20 19 18 22 22 C 1.51203 * 107.17286 * 69.33003 * 21 20 19 23 23 O 1.20758 * 120.12699 * 108.40333 * 22 21 20 24 24 C 1.50232 * 119.73910 * 288.37596 * 22 21 20 25 25 H 1.09005 * 109.47005 * 304.79373 * 1 2 3 26 26 H 1.08999 * 109.47004 * 64.78363 * 1 2 3 27 27 H 1.08996 * 109.47228 * 184.78864 * 1 2 3 28 28 H 1.09004 * 109.46635 * 239.99706 * 2 1 3 29 29 H 1.09000 * 109.46492 * 119.99889 * 2 1 3 30 30 H 1.08990 * 109.47433 * 144.34119 * 4 3 2 31 31 H 1.09004 * 109.47104 * 24.33526 * 4 3 2 32 32 H 0.97000 * 119.99891 * 359.97438 * 8 7 5 33 33 H 1.08997 * 109.47904 * 288.23040 * 17 15 13 34 34 H 1.08995 * 109.46979 * 48.24786 * 17 15 13 35 35 H 1.09000 * 109.34856 * 198.56082 * 18 17 15 36 36 H 1.09007 * 109.34774 * 318.25229 * 18 17 15 37 37 H 1.09002 * 109.45967 * 164.42814 * 19 18 17 38 38 H 1.09008 * 109.45550 * 284.38841 * 19 18 17 39 39 H 1.08998 * 109.70233 * 5.51635 * 20 19 18 40 40 H 1.09002 * 109.70004 * 126.11329 * 20 19 18 41 41 H 1.09001 * 109.91755 * 188.74897 * 21 20 19 42 42 H 1.09003 * 109.91320 * 309.91712 * 21 20 19 43 43 H 1.09007 * 109.40228 * 352.47163 * 24 22 21 44 44 H 1.09007 * 109.40057 * 232.73562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3632 2.0363 1.2642 5 6 1.1880 2.8469 1.7466 6 1 0.2754 2.8714 1.1695 7 6 1.2773 3.5567 2.9254 8 7 2.3884 3.5264 3.6285 9 14 -0.1791 4.5621 3.5230 10 1 0.1703 5.2260 4.8046 11 1 -0.5189 5.5923 2.5090 12 1 -1.3462 3.6677 3.7305 13 6 2.1506 2.0492 -1.1631 14 8 1.7931 1.5350 -2.2017 15 6 2.7426 3.4350 -1.1730 16 1 2.1955 4.0739 -0.4799 17 6 2.6659 4.0217 -2.5902 18 6 2.9908 5.5155 -2.5409 19 6 4.4959 5.7234 -2.4305 20 6 5.2172 4.7880 -3.4101 21 6 6.0328 3.7695 -2.5939 22 6 5.0447 2.8534 -1.9078 23 8 4.9198 1.7106 -2.2776 24 6 4.2193 3.3704 -0.7639 25 1 -0.3633 0.5864 0.8440 26 1 -0.3633 0.4378 -0.9297 27 1 -0.3633 -1.0240 0.0858 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.2194 2.6931 1.1114 31 1 2.6133 1.2804 2.0087 32 1 3.1448 3.0046 3.3179 33 1 3.3852 3.5143 -3.2331 34 1 1.6608 3.8813 -2.9877 35 1 2.6257 5.9947 -3.4493 36 1 2.5022 5.9629 -1.6753 37 1 4.7382 6.7584 -2.6718 38 1 4.8193 5.5024 -1.4133 39 1 4.4850 4.2643 -4.0247 40 1 5.8852 5.3675 -4.0472 41 1 6.6759 3.1915 -3.2576 42 1 6.6366 4.2885 -1.8495 43 1 4.5634 4.3680 -0.4909 44 1 4.3291 2.7042 0.0919 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362599759.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:50 Heat of formation + Delta-G solvation = -83.310927 kcal Electronic energy + Delta-G solvation = -24228.012576 eV Core-core repulsion = 20952.158645 eV Total energy + Delta-G solvation = -3275.853932 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.62869 -38.68157 -36.76504 -35.27945 -33.37232 -32.78063 -31.29986 -29.92418 -26.98491 -26.58559 -25.46554 -23.30354 -22.84922 -21.55572 -20.27284 -19.27299 -18.04688 -17.25697 -16.35723 -15.97643 -15.45586 -15.31845 -15.15175 -14.25343 -13.99390 -13.91053 -13.80510 -13.58860 -13.36572 -12.94576 -12.55252 -12.35260 -12.22467 -11.85693 -11.70599 -11.67228 -11.56575 -11.31200 -11.16583 -10.92208 -10.84298 -10.71779 -10.49710 -10.28836 -10.21948 -10.18444 -10.08653 -9.25061 -9.16850 -8.85708 -8.50274 -7.62702 -6.52863 -4.28539 2.18998 3.34505 3.35847 3.49041 3.54585 3.91309 4.21827 4.40206 4.72411 4.81488 4.89762 5.08218 5.12209 5.18834 5.21280 5.27056 5.40632 5.54731 5.56188 5.71236 5.78308 5.85992 5.90730 5.92610 5.98459 6.01584 6.03751 6.07085 6.22293 6.25709 6.26891 6.43682 6.46278 6.54550 6.59163 6.65596 6.82318 6.89812 7.48841 7.75372 7.86045 8.16584 8.44424 8.64514 9.05742 9.42045 10.82259 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.015564 B = 0.006902 C = 0.005723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.545338 B = 4055.781445 C = 4891.189713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.122 3.878 3 N -0.593 5.593 4 C 0.218 3.782 5 C -0.613 4.613 6 H 0.055 0.945 7 C 0.024 3.976 8 N -0.905 5.905 9 Si 1.066 2.934 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.287 1.287 13 C 0.528 3.472 14 O -0.565 6.565 15 C -0.090 4.090 16 H 0.120 0.880 17 C -0.115 4.115 18 C -0.121 4.121 19 C -0.136 4.136 20 C -0.121 4.121 21 C -0.170 4.170 22 C 0.359 3.641 23 O -0.450 6.450 24 C -0.176 4.176 25 H 0.067 0.933 26 H 0.052 0.948 27 H 0.050 0.950 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.037 0.963 31 H 0.023 0.977 32 H 0.268 0.732 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.062 0.938 36 H 0.070 0.930 37 H 0.064 0.936 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.070 0.930 41 H 0.083 0.917 42 H 0.094 0.906 43 H 0.100 0.900 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.170 3.944 -8.847 10.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.002 4.002 3 N -0.324 5.324 4 C 0.097 3.903 5 C -0.651 4.651 6 H 0.074 0.926 7 C -0.181 4.181 8 N -0.540 5.540 9 Si 0.894 3.106 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.214 1.214 13 C 0.316 3.684 14 O -0.445 6.445 15 C -0.111 4.111 16 H 0.138 0.862 17 C -0.153 4.153 18 C -0.159 4.159 19 C -0.173 4.173 20 C -0.158 4.158 21 C -0.208 4.208 22 C 0.234 3.766 23 O -0.322 6.322 24 C -0.213 4.213 25 H 0.086 0.914 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.054 0.946 31 H 0.041 0.959 32 H 0.078 0.922 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.089 0.911 41 H 0.102 0.898 42 H 0.112 0.888 43 H 0.119 0.881 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 4.409 4.041 -8.330 10.255 hybrid contribution 0.455 -0.943 -0.918 1.392 sum 4.863 3.099 -9.248 10.898 Atomic orbital electron populations 1.22096 0.96476 1.00824 1.02755 1.21192 0.94444 0.83336 1.01182 1.47974 1.63695 1.13050 1.07676 1.19738 0.97042 0.93049 0.80431 1.22335 1.00411 1.32208 1.10157 0.92625 1.25778 1.01931 0.97059 0.93307 1.70841 1.03598 1.39745 1.39850 0.83566 0.74459 0.76157 0.76448 1.20654 1.21277 1.21383 1.20176 0.78055 0.87093 0.83056 1.90573 1.51884 1.69575 1.32495 1.21348 0.94501 0.95985 0.99240 0.86189 1.21874 1.03165 0.94840 0.95397 1.21520 0.95835 0.96196 1.02345 1.21967 0.95741 0.99209 1.00351 1.21958 0.99156 0.96681 0.98005 1.22600 0.98335 0.99022 1.00803 1.24641 0.81263 0.87859 0.82868 1.90440 1.61526 1.20099 1.60139 1.22590 0.95034 1.04773 0.98901 0.91376 0.92859 0.93083 0.91656 0.91453 0.94578 0.95862 0.92211 0.90978 0.90949 0.91956 0.91103 0.91763 0.90396 0.90336 0.91135 0.89787 0.88782 0.88140 0.87545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.08 10.21 37.16 0.38 -2.70 16 2 C 0.12 2.44 6.09 -4.04 -0.02 2.41 16 3 N -0.59 -13.03 2.47 -175.06 -0.43 -13.46 16 4 C 0.22 5.05 3.96 -5.20 -0.02 5.03 16 5 C -0.61 -15.62 8.68 -34.44 -0.30 -15.92 16 6 H 0.06 1.48 7.79 -52.49 -0.41 1.07 16 7 C 0.02 0.64 5.46 -17.81 -0.10 0.54 16 8 N -0.90 -24.81 13.65 55.43 0.76 -24.05 16 9 Si 1.07 23.52 29.90 -169.99 -5.08 18.44 16 10 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 11 H -0.29 -6.05 7.11 56.52 0.40 -5.65 16 12 H -0.29 -6.20 7.11 56.52 0.40 -5.79 16 13 C 0.53 11.56 6.11 -10.99 -0.07 11.50 16 14 O -0.57 -13.62 15.58 5.56 0.09 -13.53 16 15 C -0.09 -1.64 1.76 -91.28 -0.16 -1.80 16 16 H 0.12 2.34 7.09 -51.93 -0.37 1.97 16 17 C -0.12 -1.83 4.18 -26.46 -0.11 -1.94 16 18 C -0.12 -1.49 5.62 -27.10 -0.15 -1.64 16 19 C -0.14 -1.42 5.44 -26.84 -0.15 -1.57 16 20 C -0.12 -1.26 5.60 -26.03 -0.15 -1.41 16 21 C -0.17 -1.94 5.83 -27.16 -0.16 -2.09 16 22 C 0.36 5.68 4.29 -29.01 -0.12 5.56 16 23 O -0.45 -8.99 17.10 6.00 0.10 -8.89 16 24 C -0.18 -2.85 4.26 -27.92 -0.12 -2.97 16 25 H 0.07 1.39 8.06 -51.93 -0.42 0.97 16 26 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.07 1.31 7.64 -51.93 -0.40 0.92 16 29 H 0.07 1.25 7.79 -51.93 -0.40 0.84 16 30 H 0.04 0.82 4.19 -51.93 -0.22 0.61 16 31 H 0.02 0.57 7.65 -51.93 -0.40 0.17 16 32 H 0.27 7.21 7.22 -40.82 -0.29 6.92 16 33 H 0.07 1.18 3.82 -51.93 -0.20 0.99 16 34 H 0.07 1.24 7.81 -51.93 -0.41 0.84 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.89 7.83 -51.93 -0.41 0.49 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.08 0.83 4.49 -51.92 -0.23 0.60 16 39 H 0.08 0.94 5.56 -51.93 -0.29 0.65 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.09 0.87 7.97 -51.93 -0.41 0.45 16 43 H 0.10 1.35 5.20 -51.92 -0.27 1.08 16 44 H 0.11 1.92 5.39 -51.92 -0.28 1.64 16 LS Contribution 331.85 15.07 5.00 5.00 Total: -1.00 -30.95 331.85 -7.55 -38.50 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -6.73 Total: 5.00 kcal Atomic # 6 Polarization: -5.76 SS G_CDS: -1.25 Total: -7.00 kcal Atomic # 7 Polarization: -37.84 SS G_CDS: 0.32 Total: -37.51 kcal Atomic # 8 Polarization: -22.61 SS G_CDS: 0.19 Total: -22.42 kcal Atomic # 14 Polarization: 23.52 SS G_CDS: -5.08 Total: 18.44 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.95 -7.55 -38.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362599759.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.816 kcal (2) G-P(sol) polarization free energy of solvation -30.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds