Wall clock time and date at job start Tue Mar 31 2020 05:35:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46500 * 109.47304 * 2 1 4 4 C 1.46497 * 120.00106 * 94.82062 * 3 2 1 5 5 C 1.50699 * 109.46968 * 264.33839 * 4 3 2 6 6 H 1.08002 * 120.00403 * 0.02562 * 5 4 3 7 7 C 1.37885 * 120.00168 * 179.97438 * 5 4 3 8 8 N 1.31520 * 119.99530 * 0.02562 * 7 5 4 9 9 Si 1.86793 * 120.00157 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47092 * 180.02562 * 9 7 5 11 11 H 1.48499 * 109.47246 * 300.00022 * 9 7 5 12 12 H 1.48496 * 109.47169 * 60.00597 * 9 7 5 13 13 C 1.34774 * 119.99757 * 274.82147 * 3 2 1 14 14 O 1.21281 * 120.00291 * 4.24489 * 13 3 2 15 15 C 1.50700 * 119.99701 * 184.24710 * 13 3 2 16 16 H 1.08992 * 109.73888 * 305.75075 * 15 13 3 17 17 C 1.53584 * 109.73997 * 185.08470 * 15 13 3 18 18 C 1.52947 * 109.43395 * 168.23683 * 17 15 13 19 19 C 1.52340 * 110.21226 * 78.33074 * 18 17 15 20 20 C 1.53449 * 109.56924 * 44.39405 * 19 18 17 21 21 C 1.53908 * 108.29707 * 245.81401 * 20 19 18 22 22 C 1.51203 * 107.17286 * 69.33003 * 21 20 19 23 23 O 1.20758 * 120.12699 * 108.40333 * 22 21 20 24 24 C 1.50232 * 119.73910 * 288.37596 * 22 21 20 25 25 H 1.09005 * 109.47005 * 304.79373 * 1 2 3 26 26 H 1.08999 * 109.47004 * 64.78363 * 1 2 3 27 27 H 1.08996 * 109.47228 * 184.78864 * 1 2 3 28 28 H 1.09004 * 109.46635 * 239.99706 * 2 1 3 29 29 H 1.09000 * 109.46492 * 119.99889 * 2 1 3 30 30 H 1.08990 * 109.47433 * 144.34119 * 4 3 2 31 31 H 1.09004 * 109.47104 * 24.33526 * 4 3 2 32 32 H 0.97000 * 119.99891 * 359.97438 * 8 7 5 33 33 H 1.08997 * 109.47904 * 288.23040 * 17 15 13 34 34 H 1.08995 * 109.46979 * 48.24786 * 17 15 13 35 35 H 1.09000 * 109.34856 * 198.56082 * 18 17 15 36 36 H 1.09007 * 109.34774 * 318.25229 * 18 17 15 37 37 H 1.09002 * 109.45967 * 164.42814 * 19 18 17 38 38 H 1.09008 * 109.45550 * 284.38841 * 19 18 17 39 39 H 1.08998 * 109.70233 * 5.51635 * 20 19 18 40 40 H 1.09002 * 109.70004 * 126.11329 * 20 19 18 41 41 H 1.09001 * 109.91755 * 188.74897 * 21 20 19 42 42 H 1.09003 * 109.91320 * 309.91712 * 21 20 19 43 43 H 1.09007 * 109.40228 * 352.47163 * 24 22 21 44 44 H 1.09007 * 109.40057 * 232.73562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3632 2.0363 1.2642 5 6 1.1880 2.8469 1.7466 6 1 0.2754 2.8714 1.1695 7 6 1.2773 3.5567 2.9254 8 7 2.3884 3.5264 3.6285 9 14 -0.1791 4.5621 3.5230 10 1 0.1703 5.2260 4.8046 11 1 -0.5189 5.5923 2.5090 12 1 -1.3462 3.6677 3.7305 13 6 2.1506 2.0492 -1.1631 14 8 1.7931 1.5350 -2.2017 15 6 2.7426 3.4350 -1.1730 16 1 2.1955 4.0739 -0.4799 17 6 2.6659 4.0217 -2.5902 18 6 2.9908 5.5155 -2.5409 19 6 4.4959 5.7234 -2.4305 20 6 5.2172 4.7880 -3.4101 21 6 6.0328 3.7695 -2.5939 22 6 5.0447 2.8534 -1.9078 23 8 4.9198 1.7106 -2.2776 24 6 4.2193 3.3704 -0.7639 25 1 -0.3633 0.5864 0.8440 26 1 -0.3633 0.4378 -0.9297 27 1 -0.3633 -1.0240 0.0858 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.2194 2.6931 1.1114 31 1 2.6133 1.2804 2.0087 32 1 3.1448 3.0046 3.3179 33 1 3.3852 3.5143 -3.2331 34 1 1.6608 3.8813 -2.9877 35 1 2.6257 5.9947 -3.4493 36 1 2.5022 5.9629 -1.6753 37 1 4.7382 6.7584 -2.6718 38 1 4.8193 5.5024 -1.4133 39 1 4.4850 4.2643 -4.0247 40 1 5.8852 5.3675 -4.0472 41 1 6.6759 3.1915 -3.2576 42 1 6.6366 4.2885 -1.8495 43 1 4.5634 4.3680 -0.4909 44 1 4.3291 2.7042 0.0919 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362599759.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:49 Heat of formation + Delta-G solvation = -100.944687 kcal Electronic energy + Delta-G solvation = -24228.777233 eV Core-core repulsion = 20952.158645 eV Total energy + Delta-G solvation = -3276.618589 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.02201 -40.27375 -37.97691 -37.10757 -34.98799 -34.36410 -32.52440 -31.49574 -28.56716 -28.06564 -26.73120 -25.00892 -24.48669 -22.86042 -21.37468 -20.68651 -19.61231 -19.10199 -17.86951 -17.34486 -17.01635 -16.74919 -16.48859 -15.68609 -15.60694 -15.46731 -15.08761 -14.86362 -14.68171 -14.53742 -14.17284 -13.87426 -13.74611 -13.39656 -13.19294 -13.10327 -12.89057 -12.76250 -12.58395 -12.41486 -12.31668 -11.98377 -11.95770 -11.85798 -11.59741 -11.30180 -11.25074 -11.14608 -10.61893 -10.51707 -10.34441 -9.48207 -8.60174 -6.37878 0.91920 1.56792 1.60997 1.76274 1.81756 2.24961 2.56481 3.03382 3.16289 3.52024 3.69098 3.80116 3.90710 3.96671 4.11017 4.13233 4.18634 4.29888 4.32182 4.41640 4.44460 4.53900 4.59852 4.63553 4.68101 4.77635 4.84287 4.89856 4.92772 4.99151 5.03443 5.06021 5.13854 5.24035 5.25975 5.37613 5.43673 5.57231 5.70786 5.86064 6.13841 6.51289 6.52120 6.65093 7.27569 7.40773 8.74428 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.015564 B = 0.006902 C = 0.005723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.545338 B = 4055.781445 C = 4891.189713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.113 3.887 3 N -0.600 5.600 4 C 0.227 3.773 5 C -0.614 4.614 6 H 0.041 0.959 7 C -0.013 4.013 8 N -0.924 5.924 9 Si 1.106 2.894 10 H -0.281 1.281 11 H -0.270 1.270 12 H -0.280 1.280 13 C 0.518 3.482 14 O -0.593 6.593 15 C -0.088 4.088 16 H 0.107 0.893 17 C -0.109 4.109 18 C -0.117 4.117 19 C -0.133 4.133 20 C -0.117 4.117 21 C -0.161 4.161 22 C 0.361 3.639 23 O -0.500 6.500 24 C -0.176 4.176 25 H 0.049 0.951 26 H 0.036 0.964 27 H 0.085 0.915 28 H 0.061 0.939 29 H 0.080 0.920 30 H 0.045 0.955 31 H 0.010 0.990 32 H 0.261 0.739 33 H 0.067 0.933 34 H 0.050 0.950 35 H 0.079 0.921 36 H 0.067 0.933 37 H 0.092 0.908 38 H 0.077 0.923 39 H 0.059 0.941 40 H 0.102 0.898 41 H 0.090 0.910 42 H 0.126 0.874 43 H 0.134 0.866 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.978 5.947 -9.284 12.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.010 4.010 3 N -0.330 5.330 4 C 0.106 3.894 5 C -0.653 4.653 6 H 0.059 0.941 7 C -0.214 4.214 8 N -0.561 5.561 9 Si 0.928 3.072 10 H -0.207 1.207 11 H -0.196 1.196 12 H -0.206 1.206 13 C 0.307 3.693 14 O -0.475 6.475 15 C -0.109 4.109 16 H 0.125 0.875 17 C -0.147 4.147 18 C -0.154 4.154 19 C -0.170 4.170 20 C -0.154 4.154 21 C -0.198 4.198 22 C 0.239 3.761 23 O -0.376 6.376 24 C -0.213 4.213 25 H 0.068 0.932 26 H 0.056 0.944 27 H 0.104 0.896 28 H 0.080 0.920 29 H 0.098 0.902 30 H 0.063 0.937 31 H 0.028 0.972 32 H 0.070 0.930 33 H 0.085 0.915 34 H 0.069 0.931 35 H 0.098 0.902 36 H 0.086 0.914 37 H 0.111 0.889 38 H 0.095 0.905 39 H 0.078 0.922 40 H 0.121 0.879 41 H 0.109 0.891 42 H 0.144 0.856 43 H 0.152 0.848 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 5.224 6.048 -8.771 11.866 hybrid contribution 0.193 -1.645 -0.803 1.841 sum 5.417 4.403 -9.574 11.849 Atomic orbital electron populations 1.21973 0.95439 1.02514 1.00957 1.21376 0.95327 0.82710 1.01608 1.48088 1.63714 1.13775 1.07401 1.19552 0.96734 0.92551 0.80522 1.22437 1.00392 1.32361 1.10069 0.94065 1.26911 1.03287 0.97699 0.93470 1.70936 1.04073 1.40630 1.40449 0.83042 0.72195 0.75554 0.76367 1.20672 1.19564 1.20611 1.20885 0.77528 0.88387 0.82476 1.90541 1.53089 1.70635 1.33250 1.21348 0.95485 0.93395 1.00638 0.87546 1.21859 1.01888 0.97557 0.93385 1.21507 0.97732 0.93023 1.03145 1.21977 0.93834 1.00889 1.00282 1.21967 0.99168 0.96379 0.97927 1.22643 0.97394 0.98398 1.01384 1.25225 0.81232 0.87585 0.82037 1.90430 1.63266 1.22435 1.61458 1.22645 0.93909 1.06165 0.98576 0.93176 0.94443 0.89627 0.92013 0.90164 0.93714 0.97207 0.92964 0.91453 0.93113 0.90203 0.91380 0.88918 0.90510 0.92226 0.87912 0.89148 0.85630 0.84838 0.89833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.73 10.21 71.98 0.73 -4.99 16 2 C 0.11 4.60 6.09 86.38 0.53 5.13 16 3 N -0.60 -27.14 2.47 -826.16 -2.04 -29.18 16 4 C 0.23 10.80 3.96 85.63 0.34 11.14 16 5 C -0.61 -31.69 8.68 25.60 0.22 -31.46 16 6 H 0.04 2.22 7.79 -2.91 -0.02 2.20 16 7 C -0.01 -0.68 5.46 84.66 0.46 -0.22 16 8 N -0.92 -50.65 13.65 21.45 0.29 -50.36 16 9 Si 1.11 46.71 29.90 68.60 2.05 48.76 16 10 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 11 H -0.27 -10.66 7.11 99.48 0.71 -9.96 16 12 H -0.28 -11.45 7.11 99.48 0.71 -10.74 16 13 C 0.52 23.43 6.11 87.66 0.54 23.96 16 14 O -0.59 -29.68 15.58 -3.03 -0.05 -29.73 16 15 C -0.09 -3.25 1.76 -11.22 -0.02 -3.27 16 16 H 0.11 4.22 7.09 -2.39 -0.02 4.21 16 17 C -0.11 -3.46 4.18 30.77 0.13 -3.34 16 18 C -0.12 -2.61 5.62 30.36 0.17 -2.44 16 19 C -0.13 -2.27 5.44 30.53 0.17 -2.11 16 20 C -0.12 -2.03 5.60 31.05 0.17 -1.86 16 21 C -0.16 -3.19 5.83 30.31 0.18 -3.01 16 22 C 0.36 11.18 4.29 29.11 0.12 11.31 16 23 O -0.50 -20.37 17.10 -1.44 -0.02 -20.40 16 24 C -0.18 -5.63 4.26 29.82 0.13 -5.50 16 25 H 0.05 2.07 8.06 -2.38 -0.02 2.05 16 26 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 28 H 0.06 2.55 7.64 -2.39 -0.02 2.54 16 29 H 0.08 3.02 7.79 -2.39 -0.02 3.00 16 30 H 0.05 2.08 4.19 -2.39 -0.01 2.07 16 31 H 0.01 0.50 7.65 -2.38 -0.02 0.48 16 32 H 0.26 14.20 7.22 -92.71 -0.67 13.53 16 33 H 0.07 2.21 3.82 -2.39 -0.01 2.20 16 34 H 0.05 1.79 7.81 -2.39 -0.02 1.77 16 35 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.07 1.58 7.83 -2.38 -0.02 1.56 16 37 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.08 1.33 4.49 -2.38 -0.01 1.32 16 39 H 0.06 1.30 5.56 -2.39 -0.01 1.29 16 40 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.13 1.76 7.97 -2.39 -0.02 1.74 16 43 H 0.13 3.33 5.20 -2.38 -0.01 3.31 16 44 H 0.08 3.08 5.39 -2.38 -0.01 3.06 16 Total: -1.00 -68.68 331.85 5.20 -63.48 By element: Atomic # 1 Polarization: 22.99 SS G_CDS: 1.10 Total: 24.09 kcal Atomic # 6 Polarization: -10.54 SS G_CDS: 3.87 Total: -6.67 kcal Atomic # 7 Polarization: -77.79 SS G_CDS: -1.75 Total: -79.54 kcal Atomic # 8 Polarization: -50.05 SS G_CDS: -0.07 Total: -50.13 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 2.05 Total: 48.76 kcal Total: -68.68 5.20 -63.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362599759.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.464 kcal (2) G-P(sol) polarization free energy of solvation -68.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds