Wall clock time and date at job start Tue Mar 31 2020 06:24:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34225 * 117.00304 * 2 1 4 4 O 1.20831 * 119.99626 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00164 * 179.97438 * 3 2 1 6 6 C 1.54158 * 111.79438 * 299.22367 * 5 3 2 7 7 C 1.54849 * 104.32112 * 261.29727 * 6 5 3 8 8 C 1.53975 * 103.14801 * 322.50273 * 7 6 5 9 9 C 1.54165 * 104.73898 * 37.01698 * 8 7 6 10 10 H 1.09002 * 111.79532 * 99.96824 * 9 8 7 11 11 C 1.54319 * 109.64759 * 224.57256 * 9 8 7 12 12 N 1.48531 * 104.67320 * 89.99241 * 11 9 8 13 13 C 1.46898 * 110.99904 * 159.19020 * 12 11 9 14 14 C 1.52994 * 109.47254 * 74.59787 * 13 12 11 15 15 C 1.53005 * 109.47274 * 180.02562 * 14 13 12 16 16 C 1.50699 * 109.47063 * 179.97438 * 15 14 13 17 17 H 1.08005 * 120.00134 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00011 * 179.97438 * 16 15 14 19 19 N 1.31517 * 120.00095 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00024 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47162 * 90.00185 * 20 18 16 22 22 H 1.48505 * 109.46999 * 210.00190 * 20 18 16 23 23 H 1.48491 * 109.47094 * 330.00054 * 20 18 16 24 24 C 1.48534 * 104.21031 * 39.64261 * 12 11 9 25 25 H 1.09010 * 109.47053 * 60.00469 * 1 2 3 26 26 H 1.09003 * 109.47685 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47560 * 300.00794 * 1 2 3 28 28 H 1.09001 * 110.46752 * 20.00968 * 6 5 3 29 29 H 1.08999 * 110.46074 * 142.59046 * 6 5 3 30 30 H 1.09001 * 110.75693 * 80.12804 * 7 6 5 31 31 H 1.09005 * 110.75799 * 203.31768 * 7 6 5 32 32 H 1.09002 * 109.18768 * 278.70326 * 8 7 6 33 33 H 1.08996 * 111.32461 * 156.41059 * 8 7 6 34 34 H 1.09004 * 110.39324 * 208.78909 * 11 9 8 35 35 H 1.08997 * 110.40149 * 331.19526 * 11 9 8 36 36 H 1.09001 * 109.46913 * 194.59787 * 13 12 11 37 37 H 1.09000 * 109.47376 * 314.59417 * 13 12 11 38 38 H 1.09001 * 109.47160 * 299.99849 * 14 13 12 39 39 H 1.09000 * 109.47231 * 59.99541 * 14 13 12 40 40 H 1.09008 * 109.46776 * 299.99510 * 15 14 13 41 41 H 1.08994 * 109.47095 * 59.99571 * 15 14 13 42 42 H 0.96991 * 120.00384 * 179.97438 * 19 18 16 43 43 H 1.08998 * 110.39538 * 201.55964 * 24 12 11 44 44 H 1.08997 * 110.49654 * 79.20568 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.1739 0.6071 1.2502 7 6 4.4653 1.7860 2.2110 8 6 4.9389 2.9023 1.2621 9 6 4.0679 2.7403 0.0004 10 1 3.2427 3.4523 -0.0159 11 6 4.9520 2.8579 -1.2590 12 7 5.3936 1.4678 -1.5398 13 6 5.8175 1.3226 -2.9387 14 6 7.1849 1.9822 -3.1284 15 6 7.6262 1.8315 -4.5856 16 6 8.9728 2.4817 -4.7725 17 1 9.4645 2.9555 -3.9357 18 6 9.5771 2.4718 -6.0117 19 7 8.9781 1.8954 -7.0309 20 14 11.2459 3.2785 -6.2436 21 1 12.3170 2.2820 -5.9887 22 1 11.3619 3.7851 -7.6347 23 1 11.3854 4.4096 -5.2917 24 6 4.1927 0.6400 -1.2589 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 3.4594 -0.0828 1.6992 29 1 5.0971 0.0875 0.9937 30 1 3.5572 2.0968 2.7276 31 1 5.2427 1.5181 2.9266 32 1 5.9905 2.7460 1.0218 33 1 4.7903 3.8876 1.7038 34 1 4.3719 3.2484 -2.0952 35 1 5.8123 3.4971 -1.0610 36 1 5.8868 0.2640 -3.1893 37 1 5.0886 1.8034 -3.5911 38 1 7.1156 3.0407 -2.8778 39 1 7.9138 1.5014 -2.4760 40 1 7.6955 0.7730 -4.8366 41 1 6.8972 2.3125 -5.2376 42 1 9.4030 1.8887 -7.9027 43 1 4.4809 -0.3923 -1.0606 44 1 3.4943 0.6848 -2.0944 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000364701017.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:30 Heat of formation + Delta-G solvation = -100.659851 kcal Electronic energy + Delta-G solvation = -22693.463587 eV Core-core repulsion = 19416.857350 eV Total energy + Delta-G solvation = -3276.606237 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.34159 -39.40236 -36.67448 -35.92840 -33.59574 -31.71474 -31.08827 -29.33549 -27.86683 -26.15440 -25.68926 -23.40852 -22.46777 -21.13865 -20.93111 -20.07502 -19.08662 -17.46966 -17.18772 -16.54832 -16.18556 -15.36103 -15.14461 -14.62959 -14.54370 -14.24938 -14.03525 -13.85834 -13.53365 -13.17792 -12.89240 -12.37455 -12.21221 -11.91116 -11.77445 -11.41995 -11.39112 -11.18384 -11.08916 -11.07291 -10.96406 -10.86838 -10.76452 -10.58427 -10.51235 -10.44849 -10.35173 -9.61079 -9.30496 -9.03856 -8.32717 -8.29830 -5.97284 -3.99199 1.97062 2.44452 3.34042 3.40032 3.43721 4.02173 4.18104 4.29769 4.47237 4.52186 4.74961 4.83043 4.89972 5.07294 5.09053 5.13156 5.22279 5.24674 5.38586 5.45185 5.50776 5.57105 5.64087 5.69921 5.74492 5.86087 5.89801 5.97739 6.00961 6.06264 6.07540 6.18528 6.31311 6.33737 6.66482 6.75650 6.99605 7.20495 7.31287 7.52866 7.71199 7.86057 8.03322 8.46665 9.08074 9.64710 11.14239 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.028729 B = 0.003295 C = 0.003099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.377881 B = 8496.674274 C = 9032.773510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.354 6.354 3 C 0.481 3.519 4 O -0.505 6.505 5 C -0.062 4.062 6 C -0.102 4.102 7 C -0.125 4.125 8 C -0.113 4.113 9 C -0.083 4.083 10 H 0.098 0.902 11 C 0.037 3.963 12 N -0.502 5.502 13 C 0.044 3.956 14 C -0.100 4.100 15 C 0.021 3.979 16 C -0.517 4.517 17 H 0.055 0.945 18 C 0.055 3.945 19 N -0.897 5.897 20 Si 0.892 3.108 21 H -0.280 1.280 22 H -0.287 1.287 23 H -0.274 1.274 24 C 0.051 3.949 25 H 0.062 0.938 26 H 0.102 0.898 27 H 0.062 0.938 28 H 0.069 0.931 29 H 0.093 0.907 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.067 0.933 34 H 0.045 0.955 35 H 0.091 0.909 36 H 0.071 0.929 37 H 0.033 0.967 38 H 0.046 0.954 39 H 0.056 0.944 40 H 0.015 0.985 41 H 0.013 0.987 42 H 0.260 0.740 43 H 0.094 0.906 44 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.298 -3.530 17.931 23.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.271 6.271 3 C 0.323 3.677 4 O -0.392 6.392 5 C -0.064 4.064 6 C -0.139 4.139 7 C -0.162 4.162 8 C -0.150 4.150 9 C -0.102 4.102 10 H 0.117 0.883 11 C -0.091 4.091 12 N -0.226 5.226 13 C -0.083 4.083 14 C -0.138 4.138 15 C -0.016 4.016 16 C -0.556 4.556 17 H 0.073 0.927 18 C -0.145 4.145 19 N -0.537 5.537 20 Si 0.720 3.280 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.199 1.199 24 C -0.078 4.078 25 H 0.081 0.919 26 H 0.120 0.880 27 H 0.080 0.920 28 H 0.088 0.912 29 H 0.111 0.889 30 H 0.078 0.922 31 H 0.092 0.908 32 H 0.099 0.901 33 H 0.086 0.914 34 H 0.063 0.937 35 H 0.109 0.891 36 H 0.089 0.911 37 H 0.051 0.949 38 H 0.065 0.935 39 H 0.075 0.925 40 H 0.034 0.966 41 H 0.031 0.969 42 H 0.069 0.931 43 H 0.112 0.888 44 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -15.044 -3.435 18.048 23.746 hybrid contribution -0.139 0.670 -0.948 1.170 sum -15.184 -2.765 17.100 23.035 Atomic orbital electron populations 1.23284 0.76456 1.03736 1.02518 1.86524 1.23265 1.33339 1.83941 1.23427 0.91419 0.81241 0.71571 1.90638 1.66864 1.36426 1.45246 1.21810 0.86032 0.99092 0.99459 1.22423 1.01476 0.97535 0.92501 1.22356 1.01027 0.95271 0.97578 1.22228 1.00346 0.98396 0.94056 1.22606 0.98086 0.93370 0.96155 0.88340 1.23236 0.98261 0.91884 0.95684 1.65486 1.28230 1.04805 1.24047 1.22499 0.98598 1.01419 0.85788 1.21573 0.93070 0.98731 1.00475 1.19081 0.95972 0.97102 0.89483 1.21251 1.03615 1.35768 0.94930 0.92662 1.25030 0.97762 0.95613 0.96137 1.69965 1.38454 1.44492 1.00751 0.86600 0.84449 0.79715 0.77281 1.20665 1.21289 1.19874 1.23070 0.91998 0.98840 0.93874 0.91889 0.88001 0.91963 0.91179 0.88881 0.92158 0.90814 0.90149 0.91410 0.93701 0.89065 0.91051 0.94904 0.93532 0.92521 0.96627 0.96876 0.93061 0.88782 0.93886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.56 101.05 1.07 1.33 16 2 O -0.35 -3.87 10.39 -39.24 -0.41 -4.28 16 3 C 0.48 6.02 6.63 36.00 0.24 6.26 16 4 O -0.50 -7.42 15.23 -18.75 -0.29 -7.71 16 5 C -0.06 -0.73 0.90 -153.36 -0.14 -0.87 16 6 C -0.10 -1.00 5.87 -25.15 -0.15 -1.15 16 7 C -0.12 -1.15 6.86 -25.25 -0.17 -1.32 16 8 C -0.11 -1.17 6.24 -25.61 -0.16 -1.33 16 9 C -0.08 -1.01 3.45 -88.32 -0.30 -1.31 16 10 H 0.10 1.27 6.78 -51.93 -0.35 0.92 16 11 C 0.04 0.52 5.24 -2.23 -0.01 0.50 16 12 N -0.50 -7.38 5.34 -230.10 -1.23 -8.61 16 13 C 0.04 0.77 4.83 -3.83 -0.02 0.75 16 14 C -0.10 -2.09 5.27 -26.73 -0.14 -2.23 16 15 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 16 C -0.52 -14.81 9.11 -34.44 -0.31 -15.13 16 17 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 18 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 19 N -0.90 -27.23 13.29 55.43 0.74 -26.50 16 20 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 24 C 0.05 0.64 5.32 -2.23 -0.01 0.63 16 25 H 0.06 0.51 8.13 -51.92 -0.42 0.09 16 26 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.46 8.13 -51.93 -0.42 0.04 16 28 H 0.07 0.63 7.73 -51.93 -0.40 0.23 16 29 H 0.09 0.93 7.58 -51.93 -0.39 0.54 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.08 0.89 7.64 -51.93 -0.40 0.49 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.04 0.65 7.75 -51.93 -0.40 0.25 16 35 H 0.09 1.26 7.45 -51.93 -0.39 0.88 16 36 H 0.07 1.22 8.08 -51.93 -0.42 0.80 16 37 H 0.03 0.58 7.77 -51.93 -0.40 0.18 16 38 H 0.05 0.96 7.46 -51.93 -0.39 0.57 16 39 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.02 0.42 8.14 -51.92 -0.42 0.00 16 41 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 42 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 43 H 0.09 1.10 7.70 -51.93 -0.40 0.70 16 44 H 0.04 0.57 7.82 -51.93 -0.41 0.17 16 LS Contribution 348.88 15.07 5.26 5.26 Total: -1.00 -31.65 348.88 -8.99 -40.65 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: -7.70 Total: -3.72 kcal Atomic # 6 Polarization: -11.58 SS G_CDS: -0.35 Total: -11.93 kcal Atomic # 7 Polarization: -34.62 SS G_CDS: -0.49 Total: -35.11 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: -0.69 Total: -11.98 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.65 -8.99 -40.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000364701017.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.011 kcal (2) G-P(sol) polarization free energy of solvation -31.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds