Wall clock time and date at job start Tue Mar 31 2020 06:24:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34225 * 117.00304 * 2 1 4 4 O 1.20831 * 119.99626 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00164 * 179.97438 * 3 2 1 6 6 C 1.54158 * 111.79438 * 299.22367 * 5 3 2 7 7 C 1.54849 * 104.32112 * 261.29727 * 6 5 3 8 8 C 1.53975 * 103.14801 * 322.50273 * 7 6 5 9 9 C 1.54165 * 104.73898 * 37.01698 * 8 7 6 10 10 H 1.09002 * 111.79532 * 99.96824 * 9 8 7 11 11 C 1.54319 * 109.64759 * 224.57256 * 9 8 7 12 12 N 1.48531 * 104.67320 * 89.99241 * 11 9 8 13 13 C 1.46898 * 110.99904 * 159.19020 * 12 11 9 14 14 C 1.52994 * 109.47254 * 74.59787 * 13 12 11 15 15 C 1.53005 * 109.47274 * 180.02562 * 14 13 12 16 16 C 1.50699 * 109.47063 * 179.97438 * 15 14 13 17 17 H 1.08005 * 120.00134 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00011 * 179.97438 * 16 15 14 19 19 N 1.31517 * 120.00095 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00024 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47162 * 90.00185 * 20 18 16 22 22 H 1.48505 * 109.46999 * 210.00190 * 20 18 16 23 23 H 1.48491 * 109.47094 * 330.00054 * 20 18 16 24 24 C 1.48534 * 104.21031 * 39.64261 * 12 11 9 25 25 H 1.09010 * 109.47053 * 60.00469 * 1 2 3 26 26 H 1.09003 * 109.47685 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47560 * 300.00794 * 1 2 3 28 28 H 1.09001 * 110.46752 * 20.00968 * 6 5 3 29 29 H 1.08999 * 110.46074 * 142.59046 * 6 5 3 30 30 H 1.09001 * 110.75693 * 80.12804 * 7 6 5 31 31 H 1.09005 * 110.75799 * 203.31768 * 7 6 5 32 32 H 1.09002 * 109.18768 * 278.70326 * 8 7 6 33 33 H 1.08996 * 111.32461 * 156.41059 * 8 7 6 34 34 H 1.09004 * 110.39324 * 208.78909 * 11 9 8 35 35 H 1.08997 * 110.40149 * 331.19526 * 11 9 8 36 36 H 1.09001 * 109.46913 * 194.59787 * 13 12 11 37 37 H 1.09000 * 109.47376 * 314.59417 * 13 12 11 38 38 H 1.09001 * 109.47160 * 299.99849 * 14 13 12 39 39 H 1.09000 * 109.47231 * 59.99541 * 14 13 12 40 40 H 1.09008 * 109.46776 * 299.99510 * 15 14 13 41 41 H 1.08994 * 109.47095 * 59.99571 * 15 14 13 42 42 H 0.96991 * 120.00384 * 179.97438 * 19 18 16 43 43 H 1.08998 * 110.39538 * 201.55964 * 24 12 11 44 44 H 1.08997 * 110.49654 * 79.20568 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.1739 0.6071 1.2502 7 6 4.4653 1.7860 2.2110 8 6 4.9389 2.9023 1.2621 9 6 4.0679 2.7403 0.0004 10 1 3.2427 3.4523 -0.0159 11 6 4.9520 2.8579 -1.2590 12 7 5.3936 1.4678 -1.5398 13 6 5.8175 1.3226 -2.9387 14 6 7.1849 1.9822 -3.1284 15 6 7.6262 1.8315 -4.5856 16 6 8.9728 2.4817 -4.7725 17 1 9.4645 2.9555 -3.9357 18 6 9.5771 2.4718 -6.0117 19 7 8.9781 1.8954 -7.0309 20 14 11.2459 3.2785 -6.2436 21 1 12.3170 2.2820 -5.9887 22 1 11.3619 3.7851 -7.6347 23 1 11.3854 4.4096 -5.2917 24 6 4.1927 0.6400 -1.2589 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 3.4594 -0.0828 1.6992 29 1 5.0971 0.0875 0.9937 30 1 3.5572 2.0968 2.7276 31 1 5.2427 1.5181 2.9266 32 1 5.9905 2.7460 1.0218 33 1 4.7903 3.8876 1.7038 34 1 4.3719 3.2484 -2.0952 35 1 5.8123 3.4971 -1.0610 36 1 5.8868 0.2640 -3.1893 37 1 5.0886 1.8034 -3.5911 38 1 7.1156 3.0407 -2.8778 39 1 7.9138 1.5014 -2.4760 40 1 7.6955 0.7730 -4.8366 41 1 6.8972 2.3125 -5.2376 42 1 9.4030 1.8887 -7.9027 43 1 4.4809 -0.3923 -1.0606 44 1 3.4943 0.6848 -2.0944 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000364701017.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:29 Heat of formation + Delta-G solvation = -119.423474 kcal Electronic energy + Delta-G solvation = -22694.277239 eV Core-core repulsion = 19416.857350 eV Total energy + Delta-G solvation = -3277.419889 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.30138 -40.38586 -37.66524 -37.14610 -35.46490 -33.42345 -32.10780 -30.59780 -28.73446 -27.74836 -26.66458 -25.01919 -23.48703 -22.51855 -21.87368 -21.56447 -20.09671 -18.62058 -18.31660 -18.00792 -17.41956 -16.59150 -16.46053 -16.17830 -15.53201 -15.33187 -15.29558 -14.98251 -14.55799 -14.40558 -14.20145 -13.79415 -13.60279 -13.18130 -13.03095 -12.88815 -12.68669 -12.48523 -12.33688 -12.30347 -12.03781 -11.95650 -11.87152 -11.80772 -11.75696 -11.58885 -11.40707 -11.36408 -11.25354 -11.03742 -10.54205 -9.54392 -8.19277 -6.30089 1.00515 1.40791 1.42277 1.53409 1.61037 2.41763 2.95451 3.13939 3.14861 3.35439 3.59622 3.87604 4.09394 4.13489 4.19891 4.25869 4.26677 4.28735 4.31410 4.38874 4.53489 4.60644 4.67401 4.71354 4.71741 4.75891 4.88083 4.93431 4.95022 5.03790 5.08307 5.18220 5.21378 5.22232 5.26141 5.30008 5.50982 5.53294 5.71948 5.84116 5.87325 5.95868 6.27707 6.60147 6.86870 7.39132 8.92749 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.028729 B = 0.003295 C = 0.003099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.377881 B = 8496.674274 C = 9032.773510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.356 6.356 3 C 0.483 3.517 4 O -0.532 6.532 5 C -0.061 4.061 6 C -0.098 4.098 7 C -0.120 4.120 8 C -0.110 4.110 9 C -0.081 4.081 10 H 0.089 0.911 11 C 0.035 3.965 12 N -0.500 5.500 13 C 0.056 3.944 14 C -0.084 4.084 15 C 0.025 3.975 16 C -0.541 4.541 17 H 0.060 0.940 18 C -0.002 4.002 19 N -0.935 5.935 20 Si 0.965 3.035 21 H -0.271 1.271 22 H -0.283 1.283 23 H -0.263 1.263 24 C 0.051 3.949 25 H 0.057 0.943 26 H 0.134 0.866 27 H 0.065 0.935 28 H 0.082 0.918 29 H 0.094 0.906 30 H 0.062 0.938 31 H 0.090 0.910 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.032 0.968 35 H 0.090 0.910 36 H 0.074 0.926 37 H 0.024 0.976 38 H 0.046 0.954 39 H 0.057 0.943 40 H -0.007 1.007 41 H -0.013 1.013 42 H 0.263 0.737 43 H 0.109 0.891 44 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.952 -3.833 19.704 25.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.272 6.272 3 C 0.327 3.673 4 O -0.421 6.421 5 C -0.063 4.063 6 C -0.135 4.135 7 C -0.157 4.157 8 C -0.148 4.148 9 C -0.100 4.100 10 H 0.107 0.893 11 C -0.093 4.093 12 N -0.224 5.224 13 C -0.072 4.072 14 C -0.122 4.122 15 C -0.013 4.013 16 C -0.579 4.579 17 H 0.078 0.922 18 C -0.199 4.199 19 N -0.575 5.575 20 Si 0.789 3.211 21 H -0.196 1.196 22 H -0.208 1.208 23 H -0.187 1.187 24 C -0.077 4.077 25 H 0.076 0.924 26 H 0.152 0.848 27 H 0.084 0.916 28 H 0.100 0.900 29 H 0.113 0.887 30 H 0.081 0.919 31 H 0.109 0.891 32 H 0.093 0.907 33 H 0.096 0.904 34 H 0.050 0.950 35 H 0.108 0.892 36 H 0.092 0.908 37 H 0.043 0.957 38 H 0.065 0.935 39 H 0.075 0.925 40 H 0.012 0.988 41 H 0.006 0.994 42 H 0.072 0.928 43 H 0.127 0.873 44 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -14.709 -3.753 19.842 24.983 hybrid contribution -0.337 0.731 -1.525 1.725 sum -15.046 -3.022 18.317 23.897 Atomic orbital electron populations 1.23591 0.74714 1.05888 1.02493 1.86511 1.24985 1.32322 1.83387 1.23522 0.91637 0.81313 0.70865 1.90628 1.67468 1.37362 1.46662 1.21814 0.85858 0.98812 0.99828 1.22438 1.01626 0.97862 0.91605 1.22354 1.01664 0.94301 0.97409 1.22214 0.99520 0.99591 0.93449 1.22558 0.97713 0.93620 0.96081 0.89299 1.23264 0.98414 0.91333 0.96265 1.65421 1.29570 1.05671 1.21714 1.22223 0.96513 1.00985 0.87495 1.21297 0.94952 0.99162 0.96782 1.18982 0.94826 0.95069 0.92383 1.21692 1.04737 1.36080 0.95397 0.92200 1.25992 1.02066 0.96105 0.95767 1.70096 1.40403 1.45675 1.01331 0.85446 0.79198 0.78966 0.77442 1.19644 1.20806 1.18737 1.23123 0.91033 0.99320 0.94233 0.92397 0.84802 0.91576 0.89981 0.88726 0.91876 0.89127 0.90720 0.90416 0.95004 0.89188 0.90779 0.95724 0.93486 0.92457 0.98824 0.99428 0.92798 0.87265 0.94653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.56 113.37 1.20 1.56 16 2 O -0.36 -7.20 10.39 -51.37 -0.53 -7.73 16 3 C 0.48 11.58 6.63 71.23 0.47 12.06 16 4 O -0.53 -15.41 15.23 21.95 0.33 -15.07 16 5 C -0.06 -1.36 0.90 -51.44 -0.05 -1.41 16 6 C -0.10 -1.70 5.87 31.62 0.19 -1.51 16 7 C -0.12 -1.91 6.86 31.56 0.22 -1.69 16 8 C -0.11 -2.10 6.24 31.32 0.20 -1.91 16 9 C -0.08 -1.89 3.45 -9.30 -0.03 -1.92 16 10 H 0.09 2.29 6.78 -2.39 -0.02 2.27 16 11 C 0.04 0.97 5.24 86.43 0.45 1.42 16 12 N -0.50 -14.42 5.34 -881.91 -4.71 -19.12 16 13 C 0.06 1.95 4.83 86.30 0.42 2.37 16 14 C -0.08 -3.52 5.27 30.59 0.16 -3.36 16 15 C 0.03 1.34 4.97 29.85 0.15 1.49 16 16 C -0.54 -31.30 9.11 25.60 0.23 -31.07 16 17 H 0.06 3.33 7.74 -2.91 -0.02 3.30 16 18 C 0.00 -0.11 5.46 84.65 0.46 0.36 16 19 N -0.93 -57.61 13.29 21.45 0.28 -57.33 16 20 Si 0.97 44.73 29.54 68.60 2.03 46.75 16 21 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 22 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 23 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 24 C 0.05 1.25 5.32 86.44 0.46 1.71 16 25 H 0.06 0.88 8.13 -2.38 -0.02 0.86 16 26 H 0.13 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.07 0.89 8.13 -2.39 -0.02 0.87 16 28 H 0.08 1.25 7.73 -2.39 -0.02 1.23 16 29 H 0.09 1.65 7.58 -2.39 -0.02 1.63 16 30 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 32 H 0.07 1.53 7.64 -2.39 -0.02 1.51 16 33 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.03 0.95 7.75 -2.38 -0.02 0.93 16 35 H 0.09 2.48 7.45 -2.39 -0.02 2.46 16 36 H 0.07 2.54 8.08 -2.39 -0.02 2.52 16 37 H 0.02 0.89 7.77 -2.39 -0.02 0.88 16 38 H 0.05 1.94 7.46 -2.39 -0.02 1.93 16 39 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 40 H -0.01 -0.38 8.14 -2.38 -0.02 -0.40 16 41 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 42 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 43 H 0.11 2.35 7.70 -2.39 -0.02 2.33 16 44 H 0.04 0.92 7.82 -2.39 -0.02 0.90 16 Total: -1.00 -68.06 348.88 2.88 -65.18 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: 0.95 Total: 9.23 kcal Atomic # 6 Polarization: -26.43 SS G_CDS: 4.52 Total: -21.91 kcal Atomic # 7 Polarization: -72.03 SS G_CDS: -4.42 Total: -76.45 kcal Atomic # 8 Polarization: -22.60 SS G_CDS: -0.20 Total: -22.80 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.75 kcal Total: -68.06 2.88 -65.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000364701017.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.246 kcal (2) G-P(sol) polarization free energy of solvation -68.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds