Wall clock time and date at job start Tue Mar 31 2020 06:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42904 * 114.00034 * 2 1 4 4 C 1.53000 * 112.85013 * 306.17329 * 3 2 1 5 5 C 1.50710 * 109.46701 * 291.34515 * 4 3 2 6 6 O 1.21276 * 120.00147 * 4.52559 * 5 4 3 7 7 N 1.34774 * 119.99536 * 184.53029 * 5 4 3 8 8 C 1.46931 * 120.63547 * 359.71697 * 7 5 4 9 9 C 1.52763 * 109.00788 * 233.58691 * 8 7 5 10 10 C 1.53037 * 109.38321 * 305.58558 * 9 8 7 11 11 C 1.50701 * 109.45837 * 181.26400 * 10 9 8 12 12 H 1.08005 * 119.99789 * 239.93046 * 11 10 9 13 13 C 1.37880 * 120.00203 * 59.93421 * 11 10 9 14 14 N 1.31514 * 119.99780 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 119.99779 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47298 * 90.00012 * 15 13 11 17 17 H 1.48511 * 109.46744 * 209.99655 * 15 13 11 18 18 H 1.48499 * 109.47524 * 329.99401 * 15 13 11 19 19 C 1.53038 * 109.53990 * 61.24281 * 10 9 8 20 20 C 1.46931 * 120.62797 * 179.97438 * 7 5 4 21 21 C 1.53776 * 113.61442 * 174.97055 * 3 2 1 22 22 C 1.53778 * 87.08104 * 219.93663 * 21 3 2 23 23 C 1.53776 * 87.17405 * 25.39086 * 22 21 3 24 24 H 1.09002 * 109.47222 * 185.51280 * 1 2 3 25 25 H 1.09001 * 109.47066 * 305.50467 * 1 2 3 26 26 H 1.08993 * 109.47423 * 65.51097 * 1 2 3 27 27 H 1.09003 * 109.47565 * 51.34168 * 4 3 2 28 28 H 1.08992 * 109.47400 * 171.34687 * 4 3 2 29 29 H 1.08998 * 109.58022 * 353.41908 * 8 7 5 30 30 H 1.09002 * 109.58423 * 113.84428 * 8 7 5 31 31 H 1.09001 * 109.56056 * 185.55461 * 9 8 7 32 32 H 1.08992 * 109.36051 * 65.49758 * 9 8 7 33 33 H 1.08998 * 109.46242 * 301.21957 * 10 9 8 34 34 H 0.97000 * 120.00039 * 180.02562 * 14 13 11 35 35 H 1.08996 * 109.49852 * 178.68175 * 19 10 9 36 36 H 1.09000 * 109.52111 * 58.60056 * 19 10 9 37 37 H 1.08997 * 109.58492 * 246.15122 * 20 7 5 38 38 H 1.08993 * 109.58498 * 6.44083 * 20 7 5 39 39 H 1.09007 * 113.61121 * 105.38800 * 21 3 2 40 40 H 1.08991 * 113.69199 * 334.49974 * 21 3 2 41 41 H 1.08998 * 113.61739 * 139.98403 * 22 21 3 42 42 H 1.09002 * 113.61625 * 270.80176 * 22 21 3 43 43 H 1.09003 * 113.61558 * 89.15892 * 23 22 21 44 44 H 1.08994 * 113.61772 * 220.06199 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.4917 2.1867 -1.1381 5 6 1.9953 1.6543 -2.4550 6 8 2.6306 0.6218 -2.4886 7 7 1.7396 2.3257 -3.5954 8 6 0.9660 3.5746 -3.5715 9 6 -0.2001 3.4564 -4.5512 10 6 0.3344 3.0741 -5.9332 11 6 -0.8114 2.9874 -6.9083 12 1 -1.0167 2.0581 -7.4191 13 6 -1.5977 4.0943 -7.1483 14 7 -1.3481 5.2256 -6.5260 15 14 -3.0184 3.9864 -8.3563 16 1 -4.2505 3.5757 -7.6362 17 1 -3.2332 5.3134 -8.9876 18 1 -2.7011 2.9847 -9.4056 19 6 1.0388 1.7179 -5.8524 20 6 2.2243 1.8195 -4.8868 21 6 3.5430 1.2973 0.1235 22 6 3.3956 2.5097 1.0580 23 6 1.9809 1.9970 1.3752 24 1 -0.3634 -1.0229 0.0987 25 1 -0.3633 0.5968 0.8366 26 1 -0.3634 0.4259 -0.9351 27 1 0.4017 2.1790 -1.1361 28 1 1.8480 3.2073 -0.9988 29 1 0.5811 3.7467 -2.5664 30 1 1.6056 4.4062 -3.8675 31 1 -0.7219 4.4113 -4.6143 32 1 -0.8889 2.6873 -4.2019 33 1 1.0419 3.8312 -6.2712 34 1 -1.9015 6.0042 -6.6945 35 1 1.3988 1.4354 -6.8417 36 1 0.3386 0.9647 -5.4912 37 1 2.9682 2.5054 -5.2920 38 1 2.6715 0.8352 -4.7488 39 1 4.0575 1.5255 -0.8100 40 1 3.9378 0.4101 0.6184 41 1 4.0706 2.4863 1.9135 42 1 3.4064 3.4668 0.5365 43 1 1.9465 1.3010 2.2133 44 1 1.2361 2.7892 1.4507 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397195579.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:42 Heat of formation + Delta-G solvation = -83.625679 kcal Electronic energy + Delta-G solvation = -23408.635376 eV Core-core repulsion = 20132.767795 eV Total energy + Delta-G solvation = -3275.867580 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.69225 -40.14009 -38.20616 -36.77738 -35.31716 -33.28102 -31.92934 -30.60357 -28.04528 -27.86505 -26.50568 -24.98851 -24.20058 -23.66617 -21.64071 -20.14791 -19.36490 -18.60936 -18.02837 -17.86612 -16.82231 -16.53735 -16.33390 -16.04943 -15.89083 -15.41973 -14.91384 -14.83724 -14.58401 -14.17963 -14.10012 -13.94944 -13.29067 -13.22722 -13.10703 -13.02136 -12.82743 -12.78994 -12.46950 -12.25813 -12.15148 -11.95295 -11.86197 -11.65263 -11.46978 -11.14471 -11.01803 -10.95690 -10.64864 -10.40099 -10.30305 -9.51175 -8.08687 -6.21704 1.40756 1.43169 1.51862 1.68472 2.08966 2.43716 2.93150 3.17925 3.41134 3.57551 3.67106 3.82909 3.96534 4.14789 4.25969 4.34663 4.38730 4.41727 4.46275 4.49837 4.53826 4.55945 4.58905 4.74202 4.83652 4.86330 4.86424 4.88281 4.97870 5.08335 5.13554 5.17798 5.24369 5.28773 5.41979 5.44403 5.56261 5.65527 5.97918 6.13091 6.38620 6.38948 6.55215 6.87165 7.25030 7.46015 8.94760 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.028334 B = 0.004058 C = 0.003995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.977222 B = 6897.546489 C = 7007.543229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.388 6.388 3 C 0.095 3.905 4 C -0.147 4.147 5 C 0.509 3.491 6 O -0.571 6.571 7 N -0.608 5.608 8 C 0.114 3.886 9 C -0.116 4.116 10 C 0.046 3.954 11 C -0.537 4.537 12 H 0.045 0.955 13 C 0.021 3.979 14 N -0.910 5.910 15 Si 0.947 3.053 16 H -0.277 1.277 17 H -0.282 1.282 18 H -0.274 1.274 19 C -0.113 4.113 20 C 0.118 3.882 21 C -0.122 4.122 22 C -0.130 4.130 23 C -0.146 4.146 24 H 0.089 0.911 25 H 0.063 0.937 26 H 0.028 0.972 27 H 0.108 0.892 28 H 0.129 0.871 29 H 0.101 0.899 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.026 0.974 33 H 0.004 0.996 34 H 0.262 0.738 35 H 0.061 0.939 36 H 0.038 0.962 37 H 0.069 0.931 38 H 0.076 0.924 39 H 0.055 0.945 40 H 0.081 0.919 41 H 0.089 0.911 42 H 0.093 0.907 43 H 0.094 0.906 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.211 -1.777 15.980 16.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.307 6.307 3 C 0.055 3.945 4 C -0.186 4.186 5 C 0.298 3.702 6 O -0.451 6.451 7 N -0.341 5.341 8 C -0.008 4.008 9 C -0.154 4.154 10 C 0.027 3.973 11 C -0.575 4.575 12 H 0.063 0.937 13 C -0.178 4.178 14 N -0.550 5.550 15 Si 0.773 3.227 16 H -0.203 1.203 17 H -0.207 1.207 18 H -0.199 1.199 19 C -0.151 4.151 20 C -0.005 4.005 21 C -0.159 4.159 22 C -0.167 4.167 23 C -0.183 4.183 24 H 0.108 0.892 25 H 0.081 0.919 26 H 0.046 0.954 27 H 0.126 0.874 28 H 0.147 0.853 29 H 0.119 0.881 30 H 0.086 0.914 31 H 0.100 0.900 32 H 0.045 0.955 33 H 0.022 0.978 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.057 0.943 37 H 0.087 0.913 38 H 0.094 0.906 39 H 0.073 0.927 40 H 0.099 0.901 41 H 0.108 0.892 42 H 0.111 0.889 43 H 0.112 0.888 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 5.592 -2.294 15.961 17.067 hybrid contribution -1.182 0.074 -1.327 1.778 sum 4.410 -2.220 14.634 15.444 Atomic orbital electron populations 1.22800 0.80973 1.03339 1.00079 1.87989 1.20217 1.27815 1.94709 1.22925 0.94886 0.82911 0.93805 1.22108 1.03567 1.02254 0.90700 1.20975 0.79486 0.83606 0.86091 1.90662 1.42180 1.24921 1.87293 1.48330 1.53862 1.25322 1.06559 1.21837 0.93123 0.84659 1.01170 1.21716 0.96301 1.02146 0.95282 1.18601 0.93891 0.91622 0.93160 1.21541 1.14713 0.96618 1.24630 0.93715 1.25592 0.99604 0.95137 0.97515 1.69931 1.40294 1.01539 1.43201 0.85726 0.80054 0.77335 0.79536 1.20258 1.20712 1.19934 1.21850 0.96335 0.99008 0.97909 1.21531 0.96177 0.99739 0.83036 1.23014 0.93412 0.99553 0.99948 1.22746 0.97031 0.97214 0.99752 1.23540 0.98491 1.00486 0.95816 0.89233 0.91862 0.95368 0.87358 0.85340 0.88131 0.91380 0.89977 0.95536 0.97765 0.92850 0.92075 0.94312 0.91300 0.90577 0.92660 0.90073 0.89213 0.88871 0.88773 0.89301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.56 10.31 113.37 1.17 1.73 16 2 O -0.39 -11.33 10.18 -140.45 -1.43 -12.76 16 3 C 0.09 2.29 0.53 -10.21 -0.01 2.28 16 4 C -0.15 -3.58 3.17 29.85 0.09 -3.49 16 5 C 0.51 17.06 7.19 87.66 0.63 17.69 16 6 O -0.57 -22.96 13.87 5.51 0.08 -22.88 16 7 N -0.61 -21.04 2.98 -819.62 -2.44 -23.49 16 8 C 0.11 3.78 6.28 86.22 0.54 4.32 16 9 C -0.12 -4.99 5.14 30.53 0.16 -4.84 16 10 C 0.05 2.19 2.07 -11.51 -0.02 2.17 16 11 C -0.54 -28.91 8.56 25.60 0.22 -28.69 16 12 H 0.04 2.43 7.74 -2.91 -0.02 2.40 16 13 C 0.02 1.10 5.30 84.66 0.45 1.55 16 14 N -0.91 -49.42 11.30 21.45 0.24 -49.18 16 15 Si 0.95 42.45 29.54 68.60 2.03 44.47 16 16 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 17 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 18 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 19 C -0.11 -4.71 5.30 30.69 0.16 -4.55 16 20 C 0.12 4.33 6.44 86.38 0.56 4.89 16 21 C -0.12 -2.93 6.84 31.12 0.21 -2.71 16 22 C -0.13 -2.09 7.72 31.12 0.24 -1.85 16 23 C -0.15 -2.42 7.12 31.18 0.22 -2.20 16 24 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 25 H 0.06 1.12 7.84 -2.39 -0.02 1.10 16 26 H 0.03 0.70 6.75 -2.39 -0.02 0.69 16 27 H 0.11 2.46 6.23 -2.39 -0.01 2.45 16 28 H 0.13 2.42 6.91 -2.39 -0.02 2.40 16 29 H 0.10 2.62 5.95 -2.39 -0.01 2.60 16 30 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.08 3.95 6.03 -2.39 -0.01 3.93 16 32 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 34 H 0.26 13.57 8.31 -92.71 -0.77 12.80 16 35 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 36 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 38 H 0.08 2.85 7.00 -2.39 -0.02 2.83 16 39 H 0.05 1.56 6.92 -2.38 -0.02 1.54 16 40 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.09 1.31 7.63 -2.39 -0.02 1.29 16 43 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 44 H 0.09 1.17 8.10 -2.39 -0.02 1.15 16 Total: -1.00 -64.48 338.01 4.07 -60.41 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: 0.97 Total: 17.12 kcal Atomic # 6 Polarization: -18.33 SS G_CDS: 4.63 Total: -13.70 kcal Atomic # 7 Polarization: -70.47 SS G_CDS: -2.20 Total: -72.67 kcal Atomic # 8 Polarization: -34.29 SS G_CDS: -1.35 Total: -35.64 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.47 kcal Total: -64.48 4.07 -60.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397195579.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.211 kcal (2) G-P(sol) polarization free energy of solvation -64.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds